Publications for Center:

EAGLES - Consortium for Estuarine Ecoindicator Research for the Gulf of Mexico

Grant Number R829458

Book Chapter (6)
Dissertation/Thesis (5)
Journal Article (48)
Paper (3)
Presentation (107)
Proceedings (2)
Reference Type Citation Progress Report Year Document Sources
Book Chapter Brouwer M, Brown-Peterson NJ, Larkin P, Manning S, Denslow Rose K. Molecular and organismal indicators of chronic and intermittent hypoxia in marine crustacean. In: Bortone S, ed. Estuarine Indicators. Boca Raton, FL: CRC Press. 2005;17:261-276. R829458C003 (2003)
R829458C003 (2005)
Book Chapter

Hiramatsu N, Cheek AO, Sullivan CV, Matsubara T, et al. Vitellogenesis and endocrine disruption. In: Mommsen TP, Moon TW, eds. Biochemistry and Molecular Biology of Fishes, Volume 6, Environmental Toxicology. New York and Amsterdam: Elsevier, 2005.

R829458C005 (2004)
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Book Chapter Rakocinski CF, Zapfe GA. Macrobenthic process indicators of estuarine condition. In:Bortone S, ed. Estuarine Indicators. Boca Raton, FL:CRC Press. 2005;20:315-331. R829458C008 (2003)
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Book Chapter Snyder RA , Lewis MA, Nocker A, Lepo JE. Microbial biofilms as integrative sensors of environmental quality. In: Bortone SA, ed. Estuarine Indicators. Boca Raton, FL: CRC Press LLC, 2005, pp. 111-126. R829458 (2005)
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Book Chapter Thomas P. The endocrine system. In: Di Giulio RT, Hinton DE, eds. The Toxicology of Fishes. Boca Raton, FL: CRC Press, 2008, Chapter 10, pp. 457-488. R829458 (2005)
Book Chapter Yang X. Integrating satellite imagery and geospatial technologies for coastal landscape pattern characterization. In: Yang X, ed. Remote Sensing and Geospatial Technologies for Coastal Ecosystem Assessment and Management. Berlin: Springer, 2009, Chapter 20, pp. 461-491. R829458 (2005)
Dissertation/Thesis Allison J. Importance of microphytobenthos at the benthic boundary layer in an estuarine sand bottom habitat. M.S. Thesis. Biology Department, University of West Florida, 2006. R829458C002 (2005)
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Dissertation/Thesis

Moss J. Stability and change in estuarine biofilms bacterial community diversity. MS Thesis. University of West Florida, Pensacola, FL, March 2005.

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Dissertation/Thesis Moss J. Temporal stability and change in the heterotrophic prokaryotic component of estuarine microbial biofilms. M.S. Thesis. Biology Department, University of West Florida, 2005. R829458C002 (2005)
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Dissertation/Thesis Murphy CA. Modeling the effects of endocrine disrupting chemicals on Atlantic croaker: understanding biomarkers and predicting population responses. Ph.D. Dissertation. Department of Oceanography and Coastal Sciences, Louisiana State University, Baton Rouge, LA, February 2006. R829458C009 (2005)
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Dissertation/Thesis Wagner M. Spatial patterns of phytoplankton and periphyton growth as indicators of estuarine condition in Escambia Bay, Florida. M.S. Thesis. Biology Department, University of West Florida, 2006. R829458C002 (2005)
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Journal Article Breitburg DL, Adamack A, Rose KA, Kolesar SE, Decker MB, Purcell JE, Keister JE, Cowan JH. The pattern and influence of low dissolved oxygen in the Patuxent River, a seasonally hypoxic estuary. Estuaries 2003;26(2A):280-297. R829458C009 (2003)
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Journal Article

Brouwer M, Larkin P, Brown-Peterson N, King C, et al. Effects of hypoxia on gene and protein expression in the blue crab, Callinectes sapidus. Marine Environmental Research 2004;58(2-5):787-792.

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Journal Article Brouwer M, Brown-Peterson NJ, Larkin P, Patel V, Denslow N, Manning S, Brouwer TH. Molecular and whole animal responses of grass shrimp, Palaemonetes pugio, exposed to chronic hypoxia. Journal of Experimental Marine Biology and Ecology 2007;341(1):16-31. R829458C003 (2005)
Journal Article Brown-Peterson NJ, Larkin P, Denslow N, King C, Manning S, Brouwer M. Molecular indicators of hypoxia in the blue crab Callinectes sapidus. Marine Ecology Progress Series 2005;286:203-215. R829458C003 (2004)
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Journal Article

Popular article featuring Cheek & Thomas projects: Janet Raloff. Choked Up: How dead zones affect fish reproduction. Science News 2004;166(20):309.

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Journal Article El Fantroussi S, Urakawa H, Bernhard AE, Kelly JJ, Noble PA, Smidt H, Yershov GM, Stahl DA. Direct profiling of environmental microbial populations by thermal dissociation analysis of native rRNAs hybridized to oligonucleotide microarrays. Applied and Environmental Microbiology 2003;69(4):2377-2382. R829458 (2005)
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Journal Article Ferguson HJ, Rakocinski CF. Tracking marsh restoration using macrobenthic metrics: implementing a functional approach. Wetlands Ecology and Management 2008;16(4):277-289. R829458 (2005)
Journal Article Fuiman LA, Rose KA, Cowan Jr. JH, Smith EP. Survival skills required for predator evasion by fish larvae and their relation to laboratory measures of performance. Animal Behaviour 2006;71(6):1389-1399. R829458C009 (2005)
Journal Article Gough HL, Dahl AL, Tribou E, Noble PA, Gaillard J-F, Stahl DA. Elevated sulfate reduction in metal-contaminated freshwater lake sediments. Journal of Geophysical Research: Biogeosciences 2008;113(G4):G04037, doi:10.1029/2008JG000738. R829458 (2005)
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Journal Article Han LH, Jordan KJ. Estimating and mapping chlorophyll-a concentration in Pensacola Bay, Florida using Landsat ETM+ data. International Journal of Remote Sensing 2005;26(23):5245-5254. R829458C001 (2004)
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Journal Article Han LH. Estimating chlorophyll-a concentration using first-derivative spectra in coastal water. International Journal of Remote Sensing 2005;26(23):5235-5244 R829458C001 (2004)
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Journal Article Kelly JJ, Siripong S, McCormack J, Janus LR, Urakawa H, El Fantroussi S, Noble PA, Sappelsa L, Rittmann BE, Stahl DA. DNA microarray detection of nitrifying bacterial 16S rRNA in wastewater treatment plant samples. Water Research 2005;39(14):3229-3238. R829458 (2005)
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Journal Article Landry CA, Steele SL, Manning S, Cheek AO. Long term hypoxia suppresses reproductive capacity in the estuarine fish, Fundulus grandis. Comparative Biochemistry and Physiology-Part A: Molecular & Integrative Physiology 2007;148(2):317-323. R829458 (2005)
Journal Article Lewitus AJ, White DL, Tymowski RG, Geesey ME, Hymel SN, Noble PA. Adapting the CHEMTAX method for assessing phytoplankton taxonomic composition in Southeastern U.S. estuaries. Estuaries 2005;28(1):160-172. R829458 (2005)
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Journal Article Martinez ML, Landry C, Boehm R, Manning S, Cheek AO, Rees BB. Effects of long-term hypoxia on enzymes of carbohydrate metabolism in the Gulf killifish, Fundulus grandis. Journal of Experimental Biology 2006;209(19):3851-3861. R829458C005 (2005)
Journal Article Morris JT, Porter D, Neet M, Noble PA, Schmidt L, Lapine LA, Jensen JR. Integrating LIDAR elevation data, multi-spectral imagery and neural network modelling for marsh characterization. International Journal of Remote Sensing 2005;26(23):5221-5234. R828677 (Final)
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Journal Article Moss JA, Nocker A, Lepo JE, Snyder RA. Stability and change in estuarine biofilm bacterial community diversity. Applied and Environmental Microbiology 2006;72(9):5679-5688. R829458 (2005)
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Journal Article

Murphy CA, Rose KA, Thomas P. Modeling vitellogenesis in female fish exposed to environmental stressors: predicting the effects of endocrine disturbance due to exposure to a PCB mixture and cadmium. Reproductive Toxicology 2005;19(3):395-409.

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Journal Article Murphy CA, Rose KA, Alvarez MC, Fuiman LA. Modeling larval fish behavior:scaling the sublethal effects of methylmercury to population-relevant endpoints. Aquatic Toxicology 2008;86(4):470-484. R827399 (2001)
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Journal Article Niemi G, Wardrop D, Brooks R, Anderson S, Brady V, Paerl H , Rakocinski C, Brouwer M, Levinson B, McDonald M. Rationale for a new generation of indicators for coastal waters. Environmental Health Perspectives 2004;112(9):979-986. R828675 (2004)
R828675 (Final)
R828677C001 (Final)
R828684 (Final)
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Journal Article Noble PA, Tymowski RG, Fletcher M, Morris JT, Lewitus AJ. Contrasting patterns of phytoplankton community pigment composition in two salt marsh estuaries in southeastern United States. Applied and Environmental Microbiology 2003;69(7):4129-4143. R826944 (2000)
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Journal Article Noble PA, Tribou EH. Neuroet: an easy-to-use artificial neural network for ecological and biological modeling. Ecological Modelling 2007;203(1-2):87-98. R829458 (2005)
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Journal Article Nocker A, Lepo JE, Snyder RA. Influence of an oyster reef on development of the microbial heterotrophic community of an estuarine biofilm. Applied and Environmental Microbiology 2004;70(11):6834-6845. R829458 (2005)
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Journal Article Nocker A, Lepo JE, Martin LL, Snyder RA. Response of estuarine biofilm microbial community development to changes in dissolved oxygen and nutrient concentrations. Microbial Ecology 2007;54(3):532-542. R829458 (2005)
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Journal Article Pozhitkov AE, Bailey KD, Noble PA. Development of a statistically robust quantification method for microorganisms in mixtures using oligonucleotide microarrays. Journal of Microbiological Methods 2007;70(2):292-300. R829458 (2005)
Journal Article Pozhitkov AE, Tautz D, Noble PA. Oligonucleotide microarrays: widely applied—poorly understood. Briefings in Functional Genomics and Proteomics 2007;6(2):141-148. R829458 (2005)
Journal Article Pozhitkov AE, Stedtfeld RD, Hashsham SA, Noble PA. Revision of the nonequilibrium thermal dissociation and stringent washing approaches for identification of mixed nucleic acid targets by microarrays. Nucleic Acids Research 2007;35(9):e70. R829458 (2005)
Journal Article Pozhitkov A, Chernov B, Yershov G, Noble PA. Evaluation of gel-pad oligonucleotide microarray technology by using artificial neural networks. Applied and Environmental Microbiology 2005;71(12):8663-8676. R829458 (2005)
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Journal Article Pozhitkov A, Noble PA, Domazet-Loso T, Nolte AW, Sonnenberg R, Staehler P, Beier M, Tautz D. Tests of rRNA hybridization to microarrays suggest that hybridization characteristics of oligonucleotide probes for species discrimination cannot be predicted. Nucleic Acids Research 2006;34(9):e66. R829458 (2005)
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Journal Article Rahman MS, Thomas P. Molecular cloning, characterization and expression of two hypoxia-inducible factor alpha subunits, HIF-1α and HIF-2α, in a hypoxia-tolerant marine teleost, Atlantic croaker (Micropogonias undulatus). Gene 2007;396(2):273-282. R829458 (2005)
Journal Article Rakocinski CF. Linking allometric macrobenthic processes to hypoxia using the Peters mass balance model. Journal of Experimental Marine Biology and Ecology 2009;381(Suppl 1):S13-S20. R829458 (2005)
Journal Article Richmond CE, Breitburg DL, Rose KA. The role of environmental generalist species in ecosystem function. Ecological Modelling 2005;188(2-4):279-295. R829458 (2005)
Journal Article

Richmond CE, Breitburg DL, Rose KA. The effect of stress tolerance on the relationship between species richness and system function. Ecological Modelling.

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Journal Article Rose KA, Murphy CA, Diamond SL, Fuiman LA, Thomas P. Using nested models and laboratory data for predicting population effects of contaminants on fish: a step towards a bottom-up approach for establishing causality in field studies. Human and Ecological Risk Assessment 2003;9(1):231-257. R829458C009 (2003)
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Journal Article Rose KA. Lack of relationship between simulated fish population responses and their life history traits: inadequate models, incorrect analysis, or site-specific factors?. Canadian Journal of Fisheries and Aquatic Sciences 2005;62(4):886-902 R829458C009 (2003)
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Journal Article Thomas P, Rahman MS, Kummer JA, Lawson S. Reproductive endocrine dysfunction in Atlantic croaker exposed to hypoxia. Marine Environmental Research 2006;62(Suppl 1):S249-S252. R826130 (1999)
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Journal Article Thomas P, Rahman MS, Khan IA, Kummer JA. Widespread endocrine disruption and reproductive impairment in an estuarine fish population exposed to seasonal hypoxia. Proceedings of The Royal Society B: Biological Sciences 2007;274(1626):2693-2701. R829458 (2005)
Journal Article Thomas P, Rahman MS. Biomarkers of hypoxia exposure and reproductive function in Atlantic croaker: a review with some preliminary findings from the northern Gulf of Mexico hypoxic zone. Journal of Experimental Marine Biology and Ecology 2009;381(Suppl 1):S38-S50. R829458 (2005)
Journal Article Thomas P, Rahman MS. Chronic hypoxia impairs gamete maturation in Atlantic croaker induced by progestins through nongenomic mechanisms resulting in reduced reproductive success. Environmental Science & Technology 2009;43(11):4175-4180. R829458 (2005)
Journal Article Urakawa H, El Fantroussi S, Smidt H, Smoot JC, Tribou EH, Kelly JJ, Noble PA, Stahl DA. Optimization of single-base-pair mismatch discrimination in oligonucleotide microarrays. Applied and Environmental Microbiology 2003;69(5):2848-2856. R829458 (2005)
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Journal Article Yang X, Liu Z. Quantifying landscape pattern and its change in an estuarine watershed using satellite imagery and landscape metrics. International Journal of Remote Sensing 2005;26(23):5297-5323. R829458C007 (2004)
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Journal Article Yang XJ. Remote sensing and GIS applications for estuarine ecosystem analysis:an overview. International Journal of Remote Sensing 2005;26(23):5347-5356. R829458C007 (2004)
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Journal Article Yang X. Estimating landscape imperviousness with remotely sensed imagery. IEEE Geoscience and Remote Sensing Letters 2006;3(1):6-9. R829458C007 (2004)
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Journal Article Yang X, Lo CP. Using a time series of satellite imagery to detect land use and land cover changes in the Atlanta, Georgia metropolitan area. International Journal of Remote Sensing 2002;23(9):1775-1798 R829458C007 (2003)
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Journal Article

Yang X. Geospatial technologies for coastal and estuarine ecosystem analysis: status and research priorities. Journal of Coastal Research

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Journal Article Yang X, Liu Z. Use of satellite-derived landscape imperviousness index to characterize urban spatial growth. Computers, Environment and Urban Systems 2005; 29(5):524-540. R829458C007 (2003)
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Journal Article Yang X, Liu Z. Using satellite imagery and GIS for land-use and land-cover change mapping in an estuarine watershed. International Journal of Remote Sensing 2005;26(23):5275-5296. R829458C007 (2005)
Journal Article Yang X, Liu Z. Use of remote sensing and landscape metrics to analyze estuarine landscape changing dynamics. International Journal of Remote Sensing . R829458C007 (2003)
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Paper Moss JA, Nocker A, Lepo JE, Snyder RA. Incorporating DNA sequence comparisons in measures of prokaryotic community diversity using the taxonomic distinctness concept. 2005. R829458 (2005)
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Paper Nocker A, Lepo JE, Proctor LM, Huggins T, et al. Comparison of nascent bacterial biofilm communities in an estuarine seagrass and a sandflat habitat. 2005 R829458 (2005)
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Paper Nocker A, Lepo JE, Proctor LM, Snyder RA. Molecular characterization of the bacterial biofilm community in an estuarine bay comprising a seagrass and a sandflat habitat. 2004. R829458 (2005)
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Presentation Adamack AT, Rose KA, Breitburg DL, Lung W-S, Nice AJ. Simulating the effects of human and natural influences on the survival of bay anchovy eggs and larvae in the Patuxent River Estuary. Presented at the American Fisheries Society 135th Annual Meeting, Anchorage, AK, September 11-15, 2005. R829458C009 (2005)
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Presentation

Brouwer M, et al. Molecular and organismal indicators of effects of chronic and intermittent hypoxia in estuarine crustacean. Presented at the Ninth Society of Environmental Toxicology and Chemistry World Congress, Portland, OR, November 14-18, 2004.

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Brouwer M, et al. Molecular and whole animal indicators of hypoxia in grass shrimp, Palaemonetes pugio. Presented at the Fourth EAGLE Meeting, Duluth, MN, September 30-October 1, 2004.

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Brouwer M, Brown-Peterson N, Larkin P, King C, et al. Molecular and organismal indicators of effects of chronic and intermittent hypoxia in estuarine crustacea. Presented at the University of California - Davis, Bodega Bay Marine Laboratory, CA, April 6, 2005.

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Presentation Brouwer M, Brown-Peterson N, Manning S, Denslow N. Changes in gene expression and reproduction in grass shrimp, Palaemonetes pugio, in response to chronic and intermittent hypoxia. Presented at the 13th Symposium on Pollutant Responses in Marine Organisms (PRIMO 13), Alessandria, Italy, June 19-22, 2005. R829458C003 (2005)
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Presentation

Brouwer M, Brown-Peterson N, Larkin P, King C, et al. Molecular and organismal indicators of effects of chronic and intermittent hypoxia in estuarine crustacea. Presented at the University of East Carolina, Greenville, NC, March 24, 2005.

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Presentation Brouwer M. The response of grass shrimp to hypoxia exposure: connecting molecular and reproductive endpoints. Presented to the Department of Biology–Coastal Resources Management, University of East Carolina, Greenville, NC, March 2005. R829458C003 (2005)
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Brouwer M, Brown-Peterson N, Larkin P, King C, et al. Molecular and organismal indicators of effects of chronic and intermittent hypoxia in estuarine crustacean. Presented at the CEER-GOM Annual Meeting, Ocean Springs, MS, May 1-4, 2005.

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Presentation Brouwer M, Brown-Peterson N, Manning S, Denslow N. Changes in gene expression and reproduction in grass shrimp, Palaemonetes pugio, in response to chronic and intermittent hypoxia. Presented at the 26th Annual Meeting of the Society of Environmental Toxicology and Chemistry, Baltimore, MD, November 13-17, 2005. R829458C003 (2005)
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Presentation Brouwer M. Control of hemocyanin biosynthesis in the blue crab Callinectes sapidus. Presented at the XIIIth International Conference on Invertebrate Dioxygen Binding Proteins, Mainz, Germany, September 2003. R829458C003 (2003)
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Presentation Brouwer M, Larkin P, Brown-Peterson N, Manning S, Denslow N. Effects of hypoxia on gene expression in the blue crab, Callinectes sapidus. Presented at the PRIMO 12 Meeting, St. Petersburg, FL, May 2003. R829458C003 (2003)
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Presentation Brouwer M, Brown-Peterson N, Larkin P, King C, Manning S, Denslow N. Molecular and organismal indicators of chronic and intermittent hypoxia in estuarine crustacea. Presented at the CEER Annual Meeting, Ocean Springs, MS, March 31-April 2, 2004. R829458C003 (2003)
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Presentation Brouwer M, Brown-Peterson N, Larkin P, King C, Manning S, Denslow N. Molecular indicators of chronic and intermittent hypoxia in marine crustacea. Presented at the Estuarine Indicators Workshop, Sanibel, FL, October 2003. R829458C003 (2003)
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Presentation Brouwer M, Larkin P, Brown-Peterson N, King C, Manning S, Denslow N. Molecular indicators of dissolved oxygen stress in estuarine Crustacea. Presented at the Society of Environmental Toxicology and Chemistry, 24th Annual Meeting, Austin, TX, November 2003. R829458C003 (2003)
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Presentation Brouwer M. Molecular indicators of dissolved oxygen stress in estuarine crustacea. Presented at the CEER Annual Meeting, Ocean Springs, MS, March 12-14, 2003. R829458C003 (2003)
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Presentation Brouwer M, Larkin P, Brown-Peterson N, King C, Manning S, Denslow N. Molecular indicators of hypoxic stress in estuarine crustacea. Presented at the STAR Progress Review Workshop: EaGLe 3rd All-Investigators Meeting, Bodega Bay, CA, December 2003. R829458C003 (2003)
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Presentation Brouwer M. Molecular, organismal, and spectral indicators of estuarine condition. Presented at Ohio State University, Olentangy River Wetland Research Park, OH, January 2004. R829458C003 (2003)
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Presentation Brown-Peterson NJ, Manning S, Denslow N, Brouwer M. Cyclic hypoxia affects gene expression and reproduction in grass shrimp, Palaemonetes pugio. Presented at the 18th Biennial Conference of the Estuarine Research Federation, Norfolk, VA, October 16-21, 2005. R829458C003 (2005)
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Brown-Peterson NJ, Manning S, Denslow N, Brouwer M. Molecular and whole-animal responses of grass shrimp, Palaemonetes pugio, to hypoxia. Presented at the Joint Meetings of Society of Wetland Scientists (South Atlantic and South Central Chapters) and Gulf Estuarine Research Society, Pensacola Beach, FL, March 30-April 2, 2005.

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Presentation Brown-Peterson N, Brouwer M, Larkin P, King C, Manning S, Denslow N. Molecular indicators of hypoxic and cyclic dissolved oxygen stress in blue crab Callinectes sapidus. Presented at the Meeting of the Estuarine Research Federation, Seattle, WA, September 2003. R829458C003 (2003)
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Presentation Cheek AO, Landry CA, Steele SL, Sutton AP. Hypoxia limits estuarine fish reproduction. Presented at the Society of Environmental Toxicology and Chemistry North America 26th Annual Meeting, Baltimore, MD, November 13-17, 2005. R829458C005 (2005)
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Presentation Cheek AO. Too breathless for sex: hypoxia as a regulator of estuarine fish reproduction. Presented at the Ecological Indicators of Estuarine Change and Condition Symposium, Biennial Estuarine Research Federation Meeting, Norfolk, VA, October 16-21, 2005. R829458C005 (2005)
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Presentation Cheek AO, Steele SL, Sutton A, Turlington R. Reproductive function in estuarine fishes: Fundulus grandis. Presented at the Consortium for Estuarine Ecoindicators Research for the Gulf of Mexico Annual Meeting, Ocean Springs, MS, March 12-14, 2003. R829458C005 (2003)
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Presentation Cheek AO. The effect of dissolved oxygen on reproduction and carbohydrate metabolism in Fundulus grandis. Presented at the Consortium for Estuarine Ecoindicators Research for the Gulf of Mexico Annual Meeting, Ocean Springs, MS, March 31-April 2, 2004. R829458C005 (2003)
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Cheek A, Landry CA, Steele SL, Sutton AP. Comparing fish reproductive indicators across three estuaries. Presented at the Fourth Annual EPA EaGLe Conference, Duluth, MN, September 30-October 1, 2004.

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Cheek A. Comparing fish reproductive indicators across three estuaries. Presented at the Annual CEER-GOM Meeting, Ocean Springs, MS, May 2-5, 2005.

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Craig K, Rose KA, Rice JA. Low dissolved oxygen and juvenile estuarine fishes: evaluating alternative approaches to incorporating movement into a spatially-explicit, individual-based model. Presented at the 134th Annual Meeting of the American Fisheries Society, Madison, WI, August 22-26, 2004.

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Presentation Craig K, Rice J, Rose K. Effects of hypoxia on juvenile estuarine fishes: bridging the gap between individual and population responses. Presented at the American Fisheries Society 135th Annual Meeting, Anchorage, AK, September 11-15, 2005. R829458C009 (2005)
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Presentation Diamond SA, Murphy C, Rose K. Modeling the effects of global climate change on Atlantic croaker. Presented at the Annual Meeting of the American Fisheries Society, Quebec City, Canada, August 10-14, 2003. R829458C009 (2003)
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Han L. Estimating chlorophyll concentration in Pensacola Bay using remote sensing techniques. Poster presented at the Fourthth U.S. EPA EaGLes Meeting, Duluth, MN, September 30-October 1, 2004.

R829458C001 (2004)
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Han L, Jordan K. Estimating and mapping chlorophyll concentration in the Gulf of Mexico Using Remote Sensing Techniques. Presented at the 2005 Annual Meeting of the Association of American Geographers, Denver, CO, April 5-9, 2005.

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Presentation Han L. Estimating algal chlorophyll concentration of coastal water using Landsat ETM+ and hyperspectral data. Presented at the 100th Annual Meeting of the Association of American Geographers, Philadelphia, PA, March 2004. R829458C001 (2003)
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Presentation Han L. Mapping chlorophyll using band ratio of Landsat ETM+ for Pensacola Bay. Presented at the STAR Progress Review Workshop: EaGLe 3rd All-Investigators Meeting, Bodega Bay, CA, December 2003. R829458C001 (2003)
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Presentation Han L. Remote measurement of water quality parameters in coastal waters. Presented at the Annual Conference of the American Society for Photogrammetry and Remote Sensing, Anchorage, AK, May 2003. R829458C001 (2003)
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Presentation Jordan K, Han L. Investigating the use of band ratios in estimating chlorophyll concentration in Pensacola Bay, Florida. Presented at the Annual Meeting of the Southeastern Division of the Association of American Geographers, Charlotte, NC, November 2003. R829458C001 (2003)
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Landry CA, Manning S, Cheek AO. Hypoxia suppresses reproduction in Gulf killifish, Fundulus grandis. Presented at the Annual Symposium on the Environment and Hormones, October 27-30, 2004.

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Presentation Landry CA, Manning S, Cheek AO. Hypoxia affects reproduction in Gulf killifish, Fundulus grandis. Presented at the Society of Integrative and Comparative Biology Annual Meeting, New Orleans, LA, January 5-8, 2004. R829458C005 (2003)
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Presentation Landry CA, Manning S, Cheek AO. Hypoxia affects reproduction in Gulf killifish, Fundulus grandis. Presented at the STAR Progress Review Workshop: EaGLe 3rd All-Investigators Meeting, Bodega Bay, CA, December 4-6, 2003. R829458C005 (2003)
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Presentation Lepo JE, Snyder R, Proctor L, Nocker A. A second planning meeting of proposed research projects. Presented at the U.S. Environmental Protection Agency, Gulf Ecology Division Laboratory, Gulf Breeze, FL, January 23, 2002. R829458 (2002)
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Presentation Lepo JE, Snyder R, Proctor L, Nocker A. Introductory meeting of proposed research projects. Presented at the U.S. Environmental Protection Agency, Gulf Ecology Division Laboratory, Gulf Breeze, FL, October 31, 2001. R829458 (2002)
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Presentation Li T, Larkin P, Brouwer M. Analysis of hypoxia responsive genes in grass shrimp by DNA microarray. Presented at the 26th Annual Meeting of the Society of Environmental Toxicology and Chemistry, Baltimore, MD, November 13-17, 2005. R829458C003 (2005)
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Presentation Li T. Analysis of hypoxia responsive genes in grass shrimp by DNA microarray. Presented to the Graduate Student Symposium, Dauphin Island, AL, February 2006. R829458C003 (2005)
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Presentation Moss JA, Nocker A, Lepo JE, Snyder RA. Alternating stable states in estuarine biofilm bacterial community structure. Presented at the Society of Wetland Scientists-South Central Chapter/Gulf Estuarine Research Society Joint Society Meeting, Pensacola, FL, April 1-3, 2005. R829458C002 (2005)
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Moss JA, Nocker A, Lepo JE, Snyder RA. Alternating stable states in estuarine biofilm bacterial community structure. Presented at the Gulf Estuarine Research Society and Society of Wetland Scientists Joint Society Meeting, Pensacola Beach, FL, March 30-April 2, 2005.

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Presentation Moss JA, Snyder RA, Lepo JE. Fluorescein diacetate as a surrogate for microbial heterotrophic activity in intact estuarine biofilms. Presented at the Coastal & Estuarine Research Federation 20th Biennial Conference: Estuaries and Coasts in a Changing World, Portland, OR, November 1-5, 2009. R829458 (2005)
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Presentation Moss JA, Snyder RA, Lepo JE. Fluorescein diacetate hydrolysis as a surrogate for microbial heterotrophic activity in estuarine biofilms. Presented at the Estuarine Research Federation Annual Meeting, Seattle, WA, September 14-18, 2003. R829458C002 (2003)
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Presentation

Moss J, Nocker A, Lepo JE, Snyder RA. Temporal dynamics of estuarine microbial biofilms. Presented at the 10th International Symposium on Microbial Ecology, Cancun, Mexico, August 22-27, 2004.

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Presentation Moss J, Nocker A, Lepo JE, Snyder RA. Temporal dynamics of estuarine microbial biofilm community structure. To be presented at the International Symposium for Microbial Ecology Annual Meeting, Cancun, Mexico, August 22-27, 2004. R829458C002 (2003)
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Presentation

Murphy CA, Rose KA, Diamond SL, Fuiman LA, et al. Modeling the effects of multiple anthropogenic and environmental stressors on Atlantic croaker populations using nested simulation models and laboratory data. Presented Fourth Society of Environmental Toxicology and Chemistry World Congress, Portland, OR, November 14-18, 2004.

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Presentation

Murphy CA, Rose KA, Thomas P. Modeling vitellogenesis in fish: relating biomarkers of endocrine disruption to ecological endpoints. Presented at FourthSociety of Environmental Toxicology and Chemistry World Congress, Portland, OR, November 14-18, 2004.

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Presentation Murphy CA, Rose KA, Thomas P. Using a vitellogenesis model of fish to relate biomarkers of endocrine disruption to ecological endpoints. Presented at the Gulf Estuarine Research Society//South Central and South Atlantic Chapters of the Society of Wetland Scientists Joint Society Meeting, Pensacola, FL, March 30-April 2, 2005. R829458C009 (2005)
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Presentation Murphy CA, Rose KA, Fuiman LA, Alvarez MC, et al. Using modeling to link the effects of contaminants on larval fish behavior to ecologically relevant end-points. Presented at the Symposium on Estuarine Indicators, 18th Biennial Conference of the Estuarine Research Federation, Norfolk, VA, October 16-20, 2005. R829458C009 (2005)
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Presentation Murphy CA, Rose KA, Diamond S, Fuiman L, Thomas P. Modeling population-level responses of Atlantic croaker to endocrine disrupting chemicals using linked simulation models and laboratory studies. Presented at the 5th International Congress of the Biology of Fish, Vancouver, Canada, July 21-26, 2002. R829458C009 (2003)
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Presentation Murphy C, Rose KA, Thomas P. Using physiological modeling to relate biomarkers of endocrine disruption to ecological endpoints. Presented at the Annual Meeting of the American Fisheries Society, Quebec City, Canada, August 10-14, 2003. R829458C009 (2003)
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Presentation Noble PA, Krick T, Tribou EH, Smidt H, Smoot LM, Smoot CC, Koenneke M, Stahl DA. Hybridization analysis of oligonucleotide DNA microarrays using melting profiles and artificial neural networks. Presented at the American Society for Microbiology General Meeting, New Orleans, LA, May 23-27, 2004. R829458 (2005)
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Presentation Noble PA. Evaluation of gel-pad oligonucleotide microarrays using artificial neural networks. Presented at the 105th American Society for Microbiology General Meeting, Atlanta, GA, June 12, 2005. R829458 (2005)
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Presentation Noble PA, Pozhitkov A. A novel approach for identifying and quantifying ribosomal RNA targets in complex mixtures using high-density oligonucleotide DNA microarrays. Poster presented at the 106th American Society for Microbiology General Meeting, Orlando, FL, May 25, 2006. R829458 (2005)
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Presentation Noble PA. Evaluation of oligonucleotide microarrays for microbiological identification. Presented at the Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China, October 2006. R829458 (2005)
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Presentation

Noble P. Ecological informatics and grappling with the complexity of microorganisms in ecological systems. Presented at the Fourth Conference of the International Society for Ecological Informatics, Busan (Pusam), Korea, October 24-28, 2004.

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Presentation

Noble P. Neuroet: an easy-to-use artificial neural network for ecological and biological modeling. Presented at the Fourth Conference of the International Society for Ecological Informatics, Busan (Pusam), Korea, October 24-28, 2004.

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Presentation Nocker A, Snyder RA, Lepo JE, Moss JA, Huggins T. Molecular analysis of habitat specificity in estuarine microbial biofilm community structures. Presented at the Estuarine Research Federation Annual Meeting, Seattle, WA, September 14-18, 2003. R829458C002 (2003)
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Presentation Nocker A, Lepo JE, Martin LL, Moss J, Launder AD, Snyder RA. Molecular analysis of microbial biofilm communities in a sewage outfall impacted environment in comparison with a reference site in Pensacola Bay, Florida. Presented at the 104th Annual Meeting of the American Society for Microbiology, New Orleans, LA, May 22-25, 2004. R829458 (2005)
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Presentation Pennington LJ, Snyder RA, Lepo JE, Ederington-Hagy M, Rondon AN, Davis RH. Habitat fidelity of estuarine microbial biofilms determined from analysis of phospholipids. Presented at the Estuarine Research Federation Annual Meeting, Seattle, WA, September 14-18, 2003. R829458C002 (2003)
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Presentation Pozhitkov A, Noble PA. Time, not temperature, is the key to minimize nonspecific hybridization on oligonucleotide microarrays. Poster presented at the 106th American Society for Microbiology General Meeting, Orlando, FL, May 25, 2006. R829458 (2005)
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Presentation

Proctor LM, Peglar MT, A Nocker A, Lepo JE, Snyder RA. Investigating the use of microbial biofilms as indicators of estuarine status: baseline data on N cycling microbial guilds in an unimpacted estuary. Presented at the 10th International Symposium on Microbial Ecology, Cancun, Mexico, August 22-27, 2004.

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Presentation Proctor LM, Snyder RA, Lepo JE, Nocker A, MacAuley S. Analysis of N cycling microorganisms in biofilm communities from estuarine environments. Presented at the National Meeting of the American Society for Microbiology, Washington, DC, May 2003. R829458C002 (2002)
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Presentation Proctor LM, MacAuley S, Lepo JE, Snyder R, Nocker A. Characterization of N-cycling microorganisms in biofilms from estuarine environments in the Gulf of Mexico. Presented at the Estuarine Research Federation Annual Meeting, Seattle, WA, September 14-18, 2003. R829458C002 (2003)
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Presentation Rahman MS, Thomas P, Kummer JA. Mechanism of hypoxia down-regulation of reproductive neuroendocrine function in an estuarine teleost, Atlantic croaker. Presented at the Western Regional Conference on Comparative Endocrinology, Oregon State University, Newport, OR, March 23-25, 2006. R829458C005 (2005)
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Presentation Rakocinski CF. Estuaries on the edge: convergence of ocean, land and culture. Co-chair of the Land Use Linkages Contributed Session (CS-10) at the 17th Biennial Conference of the Estuarine Research Federation, Seattle, WA, September 14-18, 2003. R829458C008 (2005)
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Presentation

Rakocinski CF. Comparing the benthic index for the northern Gulf of Mexico with macrobenthic process indicators of estuarine condition. Presented at the Fourth Annual EaGLe All Investigators’ Meeting, Duluth, MN, September 30-October 1, 2004.

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Presentation

Rakocinski CF. Comparisons of macrobenthic process indicators of estuarine condition in the Gulf of Mexico. To be presented at the 90th Annual Meeting Ecological Society of America -IX International Congress of Ecology (INTECOL), Montreal, Canada, August 7-12, 2005.

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Presentation Rakocinski CF. Comparing the benthic index for the northern Gulf of Mexico with macrobenthic process indicators of estuarine condition. Presented at the 2005 Gulf Estuarine Research Society South Central and South Atlantic Chapters of the Society of Wetland Scientists Joint Society Meeting, Pensacola Beach, FL, March 30-April 2, 2005. R829458C008 (2005)
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Presentation Rakocinski CF, Morris J. Estuarine interactions: biological-physical feedbacks and adaptations. Co-chair of the Ecological Indicators of Estuarine Change and Condition Special Session (SPS 17) at the 18th International Biennnial Conference of the Estuarine Research Federation Conference, Norfolk, VA, October 16-21, 2005. R829458C008 (2005)
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Presentation

Rakocinski CF. Comparing the benthic index for the northern Gulf of Mexico with macrobenthic process indicators of estuarine condition. To be presented at the 18th Biennial Conference of the Estuarine Research Federation, Norfolk, VA, October 16-21, 2005.

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Presentation

Rakocinski CF. Comparing the benthic index for the northern Gulf of Mexico with macrobenthic process indicators of estuarine condition. Presented at the Gulf Estuarine Research Society and Society of Wetland Scientists South Central Chapter Joint Meeting, Pensacola Beach, FL, March 30-April 1, 2005.

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Presentation Rakocinski CF, Zapfe GA. Macrobenthic process indicators of estuarine condition. Presented at the Sanibel-Captiva Conservation FoundationWorkshop on Estuarine Indicators, Sanibel Island, FL, October 29-31, 2003. R829458C008 (2003)
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Presentation Rakocinski CF. Macrobenthic process-indicators of estuarine condition. Presented at the STAR Progress Review Workshop: EaGLe 3rd All-Investigators Meeting, Bodega Bay, CA, December 4-6, 2003. R829458C008 (2003)
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Presentation Rakocinski CF, Zapfe GA. Macrobenthic-process indicators of residential land-use in the Grand Bay National Estuarine Research Reserve. Presented at the 17th Biennial Conference of the Estuarine Research Federation, Seattle, WA, September 14-18, 2003. R829458C008 (2002)
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Presentation

Rose KA, et al. Hypoxia and nutrient indicators in Gulf of Mexico estuaries: integration across scales. Presented at the Fourth Annual EaGLe Centers’ Conference, Duluth, MN, September 30-October 1, 2004.

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Presentation Rose KA. Use of modeling to separate the effects of multiple stressors on fish populations. Presented at the Workshop on Predicting the Effects of Overfishing, Euthrophication, and Disease on Estuarine Fish Assemblages: Disentangling Effects of Multiple Stressors on Estuarine Food Webs, Smithsonian Environmental Research Center, Edgewater, MD, May 2005. R829458C009 (2005)
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Presentation Rose KA. Fish population responses to stress and enhancement: where have I gone wrong? Presented at the Annual Meeting of the American Fisheries Society, Quebec City, Canada, August 10-14, 2003. R829458C009 (2003)
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Presentation Rose KA, Murphy CA, Thomas P, Sable S, Cheek A, Landry KA, Brouwer M, Nunez BS. Integration across scales using simulation modeling: an example using hypoxia and contaminant effects on fish and crustacea. Presented at the STAR Progress Review Workshop: EaGLe 3rd All-Investigators Meeting, Bodega Bay, CA, December 4-5, 2003. R829458C009 (2003)
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Presentation

Sable SE, Rose KA, Cheek AO, Brouwer M, et al. Dissolved oxygen effects in a northern Gulf of Mexico tidal marsh community: implications from an individual-based model. Presented at the 13th Annual Meeting of the American Fisheries Society, Madison, WI, August 22-26, 2004.

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Presentation

Sable SE, Rose KA. Simulating marsh community dynamics in the northern Gulf of Mexico. Presented at the Essential Fish Habitat Meeting, Louisiana Department of Wildlife and Fisheries, Baton Rouge, LA, July 2004.

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Presentation Sable SE, Rose KA, Brouwer M. Relating field-measured biomarkers of dissolved oxygen stress in grass shrimp to marsh community responses using laboratory data and simulation modeling. Presented at the 135th Annual Meeting of the American Fisheries Society, Anchorage, AK, September 11-15, 2005. R829458C003 (2005)
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Presentation Snyder RA, Nocker A, Proctor L, Lepo JE. Estuarine microbial biofilms as integrative sensors of environmental quality. To be presented at the International Symposium for Microbial Ecology Annual Meeting, Cancun, Mexico, August 22-27, 2004. R829458C002 (2003)
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Presentation Snyder RA, Lepo JE, Nocker A, Proctor LM, Pennington L, Moss J, Ederington-Hagy M, MacAuley S. Microbial biofilms as indicators of estuarine condition. Presented at the National Meeting of the American Society for Microbiology, Washington, DC, May 2003. R829458C002 (2002)
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Presentation Snyder RA, Lepo JE, Nocker A, Proctor L, Pennington L, Moss J, Huggins T. Microbial biofilms as indicators of estuarine condition. Presented at the Estuarine Research Federation Annual Meeting, Seattle, WA, September 14-18, 2003. R829458C002 (2003)
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Presentation

Thomas P, Rahman S, Kummer J. Reproductive and endocrine responses of Atlantic croaker to moderate hypoxia. Presented at the Fourth Society of Environmental Toxicology and Chemistry World Congress, Portland, OR, November 14-18, 2004.

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Presentation

Thomas P. Fish reproductive indicators of estuarine condition: response to hypoxia. Presented at the Fourth Annual EPA EAGLE Conference, Duluth, MN, September 30-October 1, 2004.

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Presentation Thomas P, Rahman S, Kummer JA, Khan I. Neuroendocrine changes associated with reproductive dysfunction in Atlantic croaker after exposure to hypoxia. Presented at the 13th International Symposium on Pollution Responses in Marine Organisms, Alessandria, Italy, June 19-23, 2005. R829458C005 (2005)
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Presentation

Thomas P. Fish reproductive indicators of estuarine condition: response to hypoxia. Presented at the Annual CEER-GOM Meeting, Ocean Springs, MS, May 2-5, 2005.

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Presentation Thomas P, Rahman S, Kummer JA, Khan I. Neuroendocrine changes associated with reproductive dysfunction in Atlantic croaker after exposure to hypoxia. Presented at the Society of Environmental Toxicology and Chemistry North America 26th Annual Meeting, Baltimore, MD, November 13-17, 2005. R829458C005 (2005)
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Presentation Thomas P, Rose K, Murphy C. Challenges in detecting chemical actions on the reproductive endocrine system and determining the long-term consequences. Presented at the U.S. Environmental Protection Agency Workshop on Computational Toxicology, Research Triangle Park, NC, October 2003. R829458C005 (2003)
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Presentation Thomas P. Reproductive biomarkers in croaker exposed to moderate hypoxia. Presented at the Consortium for Estuarine Ecoindicators Research for the Gulf of Mexico Annual Meeting, Ocean Springs, MS, March 12-14, 2003. R829458C005 (2003)
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Presentation Thomas P. Reproductive function in Atlantic croaker chronically exposed to moderate hypoxia. Presented at the Society of Environmental Toxicology and Chemistry Annual Meeting, Austin, TX, November 2003. R829458C005 (2003)
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Presentation Thomas P. Reproductive function in croaker exposed to moderate hypoxia. Presented at the Consortium for Estuarine Ecoindicators Research for the Gulf of Mexico Annual Meeting, Ocean Springs, MS, March 31-April 2, 2004. R829458C005 (2003)
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Presentation Tribou E, Lewitus AJ, Tymowski RG, Noble PA. Application of neural network approaches for determining associations between estuarine phytoplankton communities and environmental variables. Presented at the Estuarine Research Federation (ERF) Annual Meeting, Seattle, WA, September 14-18, 2003. R829458 (2005)
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Presentation

Wagner ME, Cramer P, McAllister MJ, Allison JG, et al. Microbial biofilms as indicators of estuarine ecosystem status. Presented at the Gulf Estuarine Research Society and Society of Wetland Scientists Joint Society Meeting, Pensacola Beach, FL, March 30-April 2, 2005.

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Presentation

Yang X, Liu Z. Characterizing estuarine landscape structure and pattern dynamics with remote sensing and ecological metrics. Presented at the 100th Annual Meeting of the Association of American Geographers, Philadelphia, PA, March 14-19, 2004.

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Presentation

Yang X, Liu Z. Predicting estuarine water quality with landscape and socio-economic metrics. Presented at the 100th Annual Meeting of the Association of American Geographers, Philadelphia, PA, March 14-19, 2004.

R829458C007 (2004)
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Presentation

Yang X. Modeling estuarine water quality indicators with landscape and socio-economic metrics. Presented at the 2004 Annual Meeting of the EPA EaGle Research Program, Duluth, MN, September 29-30, 2004.

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Presentation Yang X. Linking estuarine water quality with landscape and socioeconomic metrics using GIS and spatial modeling techniques. Presented at the 2005 Annual Meeting of the Association of American Geographers, Denver, CO, April 5-9, 2005. R829458C007 (2004)
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Presentation Yang X. Cartographic visualization techniques for coastal watershed characterization. Presented at the 22nd International Cartographic Conference, A Coruña, Spain, July 9-16, 2005. R829458C007 (2005)
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Presentation Yang X. Modeling past and future land use pattern impacts upon pollution inputs into an estuary:a preliminary study. Presented at the 2006 Annual Meeting of the Association of American Geographers, Chicago, IL, March 7-11, 2006. R829458C007 (2005)
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Presentation Yang X, Liu Z. Characterizing coastal landscape structure and pattern changes with remote sensing and GIS. Presented at the 99th Annual Meeting of the Association of American Geographers, New Orleans, LA, March 4-8, 2003. R829458C007 (2002)
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Presentation Yang X, Liu Z. Establishing an environmental information system for integrated estuarine ecosystem assessment. Presented at the 2003 Annual Meeting of the Southeastern Division of the Association of American Geographers, Charlotte, NC, November 2003. R829458C007 (2003)
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Proceedings

Rakocinski CF, McLelland JA. Macroinfauna. In: Peterson MS, Waggy GL, Woodrey M, eds. The Grand Bay National Estuarine Research Reserve Site Profile, Biloxi, Mississippi, 2005.

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Proceedings Yang X. Cartographic visualization techniques for coastal watershed characterization. In:Proceedings of the 22nd International Cartographic Conference,A Coruña, Spain, July 9-16 2005. R829458C007 (2004)
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