Grantee Research Project Results
Journal Publications for Center:
New Jersey Research Center for Environmental Bioinformatics and Computational Toxicology
Grant Number R832721
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| Reference Type | Citation | Progress Report Year | Document Sources |
|---|---|---|---|
| Journal Article | Ahmann D, Krumholz LR, Hemond HF, Lovley DR, Morel FMM. Microbial mobilization of arsenic from sediments of the Aberjona Watershed. Environmental Science & Technology 1997;31(10):2923-2930. |
R823222 (Final) |
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| Journal Article | Ai N, Krasowski MD, Welsh WJ, Ekins S. Understanding nuclear receptors using computational methods. Drug Discovery Today 2009;14(9-10):486-494. |
R832721 (2008) |
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| Journal Article | Almon RR, Yang E, Lai W, Androulakis IP, Ghimbovschi S, Hoffman EP, Jusko WJ, DuBois DC. Relationships between circadian rhythms and modulation of gene expression by glucocorticoids in skeletal muscle. American Journal of Physiology-Regulatory, Integrative and Comparative Physiology 2008;295(4):R1031-R1047. |
R832721 (2008) |
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| Journal Article | Almon RR, Yang E, Lai W, Androulakis IP, DuBois DC, Jusko WJ. Circadian variations in rat liver gene expression: relationships to drug actions. Journal of Pharmacology and Experimental Therapeutics 2008;326(3):700-716. |
R832721 (2008) |
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| Journal Article | Alter RE, Fan Y, Lintner BR, Weaver CP. Observational evidence that Great Plains irrigation has enhanced summer precipitation intensity and totals in the midwestern United States. Journal of Hydrometeorology 2015;16(4):1717-1735. |
R834190 (Final) |
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| Journal Article | Altieri KE, Carlton AG, Lim H-J, Turpin BJ, Seitzinger SP. Evidence for oligomer formation in clouds: reactions of isoprene oxidation products. Environmental Science & Technology 2006;40(16):4956-4960. |
R831073 (2005) R831073 (2006) R831073 (Final) |
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| Journal Article | Altieri KE, Seitzinger SP, Carlton AG, Turpin BJ, Klein GC, Marshall AG. Oligomers formed through in-cloud methylglyoxal reactions: chemical composition, properties, and mechanisms investigated by ultra-high resolution FT-ICR mass spectrometry. Atmospheric Environment 2008;42(7):1476-1490. |
R831073 (Final) R833751 (2008) R833751 (2009) R833751 (2010) R833751 (Final) |
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| Journal Article | Altieri KE, Turpin BJ, Seitzinger SP. Oligomers, organosulfates, and nitroxy organosulfates in rainwater identified by ultra-high resolution electrospray ionization FT-ICR mass spectrometry. Atmospheric Chemistry and Physics Discussions 2008;8(5):17439-17466. |
R833751 (2008) |
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| Journal Article | Altieri KE, Turpin BJ, Seitzinger SP. Oligomers, organosulfates, and nitrooxy organosulfates in rainwater identified by ultra-high resolution electrospray ionization FT-ICR mass spectrometry. Atmospheric Chemistry and Physics 2009;9(7):2533-2542. |
R833751 (2009) R833751 (Final) |
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| Journal Article | Altieri KE, Turpin BJ, Seitzinger SP. Composition of dissolved organic nitrogen in continental precipitation investigated by ultra-high resolution FT-ICR mass spectrometry. Environmental Science & Technology 2009;43(18):6950-6955. |
R833751 (2009) R833751 (2010) R833751 (Final) |
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| Journal Article | Amyot M, Gill GA, Morel FMM. Production and loss of dissolved gaseous mercury in coastal seawater. Environmental Science & Technology 1997;31:3606-3611. |
R824778 (1998) R824778 (Final) |
not available |
| Journal Article | Amyot M, Lean DRS, Poissant L, Doyon MR. Distribution and transformation of elemental mercury in the St. Lawrence River and Lake Ontario. Canadian Journal of Fisheries and Aquatic Sciences 2000;57:(Suppl. 1)155-163. |
R827915 (2001) |
not available |
| Journal Article | Amyot M, Auclair JC, Poissant L. In situ high temporal resolution analysis of elemental mercury in natural water. Analytica Chimica Acta 2001;447(1-2):153-159. |
R827915 (2001) R827915 (Final) |
not available |
| Journal Article | Androulakis IP, Yang E, Almon RR. Analysis of time-series gene expression data:methods, challenges, and opportunities. Annual Review of Biomedical Engineering 2007;9:205-228. |
R832721 (2007) |
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| Journal Article | Arora S, Wang X, Keenan S, Andaya C, Zhang Q, Peng Y, Welsh W. Novel Microtubule Polymerization Inhibitor with Potent Antiproliferative and Antitumor Activity. CANCER RESEARCH 2009;69(5):1910-1915 |
R832721 (Final) |
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| Journal Article | Baker KR, Carlton AG, Kleindienst TE, Offenberg JH, Beaver MR, Gentner DR, Goldstein AH, Hayes PL, Jimenez JL, Gilman JB, de Gouw JA, Woody MC, Pye HOT, Kelly JT, Lewandowski M, Jaoui M, Stevens PS, Brune WH, Lin Y-H, Rubitschun CL, Surratt JD. Gas and aerosol carbon in California: comparison of measurements and model predictions in Pasadena and Bakersfield. Atmospheric Chemistry and Physics 2015;15(9):5243-5258. |
R835041 (2015) R835041 (Final) |
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| Journal Article | Baliban RC, DiMaggio PA, Plazas-Mayorca MD, Young NL, Garcia BA, Floudas CA. A novel approach for untargeted post-translational modification identification using integer linear optimization and tandem mass spectrometry. Molecular and Cellular Proteomics 2010;9(5):764-779. |
R832721 (Final) |
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| Journal Article | Bandilla KW, Celia MA, Elliot TR, Person M, Ellet KM, Rupp JA, Gable C, Zhang Y. Modeling carbon sequestration in the Illinois Basin using a vertically-integrated approach. Computing and Visualization in Science 2012;15(1):39-51. |
R834385 (2012) R834385 (Final) |
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| Journal Article | Bandilla K, Celia M, Birkholzer J, Cihan A, Leister E. Multiphase Modeling of Geologic Carbon Sequestration in Saline Aquifers. GROUNDWATER 2015;53(3):362-377. |
R834385 (Final) |
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| Journal Article | Bash JO, Carlton AG, Hutzell WT, Bullock Jr OR. Regional air quality model application of the aqueous-phase photo reduction of atmospheric oxidized mercury by dicarboxylic acids. Atmosphere 2014;5(1):1-15. |
R835041 (2014) R835041 (2015) R835041 (Final) |
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| Journal Article | Bellows ML, Fung HK, Taylor MS, Floudas CA, Lopez de Victoria A, Morikis D. New compstatin variants through two de novo protein design frameworks. Biophysical Journal 2010;98(10):2337-2346. |
R832721 (Final) |
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| Journal Article | Bellows M, Floutas C. Computational Methods for De novo Protein Design and its Applications to the Human Immunodeficiency Vir 1, Purine Nucleoside Phosphorylase, Ubiquitin Specific Protease 7, and Histone Demethylases. CURRENT DRUG TARGETS 2010;11(3):264-278. |
R832721 (Final) |
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| Journal Article | Bielory L, Lyons K, Goldberg R. Climate change and allergic disease. Current Allergy and Asthma Reports 2012;12(6):485-494. |
R834547 (2012) R834547 (Final) |
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| Journal Article | Blando J, Bielory L, Nguyen V, Diaz R, Jeng HA. Anthropogenic climate change and allergic diseases. Atmosphere 2012;3(1):200-212. |
R834547 (2011) R834547 (Final) |
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| Journal Article | Braida WJ, White JC, Ferrandino FJ, Pignatello JJ. Effect of solute concentration on sorption of polyaromatic hydrocarbons in soil: uptake rates. Environmental Science & Technology 2001;35(13):2765-2772. |
R825959 (Final) |
not available |
| Journal Article | Braida WJ, White JC, Zhao DY, Ferrandino FJ, Pignatello JJ. Concentration-dependent kinetics of pollutant desorption from soils. Environmental Toxicology and Chemistry 2002;21(12):2573-2580 |
R825959 (Final) |
not available |
| Journal Article | Braida WJ, Pignatello JJ, Lu YF, Ravikovitch PI, Neimark AV, Xing BS. Sorption hysteresis of benzene in charcoal particles. Environmental Science & Technology 2003;37(2):409-417 |
R825959 (Final) |
not available |
| Journal Article | Brell G, Li G, Rabitz H. An efficient algorithm to accelerate the discovery of complex material formulations. The Journal of Chemical Physics 2010;132(17):174103-174110. |
R832721 (Final) |
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| Journal Article | Buscheck TA, Sun YW, Chen MJ, Hao Y, Wolery TJ, Bourcier WL, Court B, Celia MA, Friedmann SJ, Aines RD. Active CO2 reservoir management for carbon storage: analysis of operational strategies to relieve pressure buildup and improve injectivity. International Journal of Greenhouse Gas Control 2012;6:230-245. |
R834385 (2011) R834385 (2012) R834385 (Final) |
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| Journal Article | Cai J, Wei L, Baizhan YR, Zhang T, Guo M, Wang H, Cheng Z, Ziong J, Meng Q, Kipen H. Particle Removal efficiency of a household portable air cleaner in Real-world Residences:A single-blind Ross-over field study.Energy and Buildings 2019;203: 109464. |
R835759 (Final) |
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| Journal Article | Carlton AG, Turpin BJ, Lim H-J, Altieri KE, Seitzinger S. Link between isoprene and secondary organic aerosol (SOA):pyruvic acid oxidation yields low volatility organic acids in clouds. Geophysical Research Letters 2006;33(6):L06822 (4 pp.). |
R831073 (2005) R831073 (2006) R831073 (Final) |
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| Journal Article | Carlton AG, Turpin BJ, Altieri KE, Seitzinger S, Reff A, Lim H-J, Ervens B. Atmospheric oxalic acid and SOA production from glyoxal: results of aqueous photooxidation experiments. Atmospheric Environment 2007;41(35):7588-7602. |
R831073 (2006) R831073 (Final) |
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| Journal Article | Carlton AG, Turpin BJ, Altieri KE, Seitzinger SP, Mathur R, Roselle SJ, Weber RJ. CMAQ model performance enhanced when in-cloud secondary organic aerosol is included:comparisons of organic carbon predictions with measurements. Environmental Science & Technology 2008;42(23):8798-8802. |
R831073 (Final) R833751 (2008) R833751 (2009) R833751 (2010) R833751 (Final) |
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| Journal Article | Carlton AG, Turpin BJ. Particle partitioning potential of organic compounds is highest in the Eastern US and driven by anthropogenic water. Atmospheric Chemistry and Physics 2013;13(20):10203-10214. |
R835041 (2013) R835041 (Final) |
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| Journal Article | Carlton AG, de Gouw J, Jimenez JL, Ambrose JL, Attwood AR, Brown S, Baker KR, Brock C, Cohen RC, Edgerton S, Farkas CM, Farmer D, Goldstein AH, Gratz L Guenther A, Hunt S, Jaegle L, Jaffe DA, Mak J, McClure C, Nenes A, Nguyen TK, Pierce JR, de Sa, S, Selin NE, Shah V, Shaw S, Shepson PB, Song S, Stutz J, Surratt JD, Turpin BJ, Warneke C, Washenfelder RA, Wennberg PO, Zhou X. Synthesis of the southeast atmosphere studies: investigating fundamental atmospheric chemistry questions. Bulletin of the American Meteorological Society 2018;99(3):547-567. |
R835404 (Final) R835407 (Final) R835410 (Final) R835412 (Final) R835877 (2018) R835877 (2019) |
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| Journal Article | Celia MA, Nordbotten JM, Court B, Dobossy M, Bachu S. Field-scale application of a semi-analytical model for estimation of CO2 and brine leakage along old wells. International Journal of Greenhouse Gas Control 2011;5(2):257-269. |
R834385 (2010) R834385 (2011) R834385 (2012) R834385 (Final) |
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| Journal Article | Chekmarev DS, Kholodovych V, Balakin KV, Ivanenkov Y, Ekins S, Welsh WJ. Shape signatures: new descriptors for predicting cardiotoxicity in silico. Chemical Research in Toxicology 2008;21(6):1304-1314. |
R832721 (2008) |
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| Journal Article | Chekmarev D, Kholodovych V, Kortagere S, Welsh WJ, Ekins S. Predicting inhibitors of acetylcholinesterase by regression and classification machine learning approaches with combinations of molecular descriptors. Pharmaceutical Research 2009;26(9):2216-2224. |
R832721 (2008) |
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| Journal Article | Chen M, Martin J, Fang H, Isukapalli S, Georgopoulos PG, Welsh WJ, Tong W. ebTrack: an environmental bioinformatics system built upon ArrayTrackTM. BMC Proceedings 2009;3(Suppl 2):S5. |
R832721 (2008) |
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| Journal Article | Chen T-F, Zhang Y-L, Xu W-L, Li Z-Q, Hou B, Wang C-L, Fan M, Qian L-J, Zhou R-P, Zhang C-G. Prokaryotic expression, polyclonal antibody preparation, and sub-cellular localization analysis of Na+, K+-ATPase β2 subunit. Protein Expression and Purification 2004;37(1):47-52. |
R829391 (2004) R829391 (2005) R829391 (2006) R829391C002 (2006) |
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| Journal Article | Chen Z-Y, Sun C, Reuhl K, Bergemann A, Henkemeyer M, Zhou R. Abnormal hippocampal axon bundling in EphB receptor mutant mice. Journal of Neuroscience 2004;24(10):2366-2374. |
R829391 (2004) R829391 (2005) R829391 (2006) R829391C002 (2005) |
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| Journal Article | Cohen Hubal EA, Richard A, Aylward L, Edwards S, Gallagher J, Goldsmith M-R, Isukapalli S, Tornero-Velez R, Weber E, Kavlock R. Advancing exposure characterization for chemical evaluation and risk assessment. Journal of Toxicology and Environmental Health-Part B-Critical Reviews 2010;13(2-4):299-313. |
R832721 (Final) |
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| Journal Article | Conrad L, Rauh V, Hopener L, Acosta L, Perera F, Rundle A, Arteaga-Solis E, Miller R, Perzanowski M. Report of prenatal maternal demoralization and material hardship and infant rhinorrhea and watery eyes. Annals of Allergy Asthma & Immunology 2020;125(4):399. |
R832144 (Final) R836154 (2019) |
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| Journal Article | Court B, Elliot TR, Dammel JA, Buscheck TA, Rohmer J, Celia MA. Promising synergies to address water, sequestration, legal, and public acceptance issues associated with large-scale implementation of CO2 sequestration. Mitigation and Adaptation Strategies for Global Change 2012;17(6):569-599. |
R834385 (2012) R834385 (Final) |
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| Journal Article | Court B, Bandilla KW, Celia MA, Buscheck TA, Nordbotten JM, Dobossy M, Janzen A. Initial evaluation of advantageous synergies associated with simultaneous brine production and CO2 geological sequestration. International Journal of Greenhouse Gas Control 2012;8:90-100. |
R834385 (2011) R834385 (2012) R834385 (Final) |
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| Journal Article | Court B, Bandilla KW, Celia MA, Janzen A, Dobossy M, Nordbotten JM. Applicability of vertical‐equilibrium and sharp‐interface assumptions in CO2 sequestration modeling. International Journal of Greenhouse Gas Control 2012;10:134-147. |
R834385 (2011) R834385 (2012) R834385 (Final) |
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| Journal Article | Currie J, Ray SH, Neidell M. Quasi-experimental studies suggest that lowering air pollution levels benefits infants' and children's health. Health Affairs 2011;30(12):2391-2399. |
R834793 (Final) |
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| Journal Article | Currie J. Inequality at birth: some causes and consequences. American Economic Review 2011;101(3):1-22. |
R834793 (Final) |
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| Journal Article | Currie J, Greenstone M, Moretti E. Superfund cleanups and infant health. American Economic Review 2011;101(3):435-441. |
R834793 (Final) |
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| Journal Article | Currie J, Graff Zivin JS, Meckel K, Neidell M, Schlenker W. Something in the water: contaminated drinking water and infant health. Canadian Journal of Economics 2013;46(3):791-810. |
R834793 (2012) R834793 (Final) |
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| Journal Article | Currie J. Pollution and infant health. Child Development Perspectives 2013;7(4):237-242. |
R834793 (2012) R834793 (Final) |
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| Journal Article | Currie J, Zivin JG, Mullen J, Neidell M. What do we know about short-and long-term effects of early-life exposure to pollution? Annual Review of Resource Economics 2014;6(1):217-247. |
R834793 (Final) |
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| Journal Article | Currie J, Davis L, Greenstone M, Walker R. Environmental health risks and housing values: evidence from 1,600 toxic plant openings and closings. American Economic Review 2015;105(2):678-709. |
R834793 (Final) |
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| Journal Article | Currie J, Schwandt H. The 9/11 dust cloud and pregnancy outcomes: a reconsideration. The Journal of Human Resources 2015 Nov 30 [Epub ahead of print] doi:10.3368/jhr.51.4.0714-6533R. |
R834793 (Final) |
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| Journal Article | Dapul-Hidalgo G, Bielory L. Climate change and allergic diseases. Annals of Allergy, Asthma & Immunology 2012;109(3):166-172. |
R834547 (2011) R834547 (2012) R834547 (Final) |
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| Journal Article | Davis E, Ierapetritou M. A kriging method for the solution of nonlinear programs with black-box functions. AIChE Journal 2007;53(8):2001-2012. |
R832721 (2007) |
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| Journal Article | Davis E, Ierapetritou M. A kriging based method for the solution of mixed-integer nonlinear programs containing black-box functions. JOURNAL OF GLOBAL OPTIMIZATION 2009;43(2-3):191-205. |
R832721 (Final) |
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| Journal Article | Davis E, Ierapetritou M. A centroid-based sampling strategy for kriging global modeling and optimization. AIChE Journal 2010;56(1):220-240. |
R832721 (2008) |
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| Journal Article | DiMaggio Jr PA, Floudas CA. De novo peptide identification via tandem mass spectrometry and integer linear optimization. Analytical Chemistry 2007;79(4):1433-1446. |
R832721 (2007) |
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| Journal Article | DiMaggio Jr PA, Floudas CA. A mixed-integer optimization framework for de novo peptide identification. AIChE Journal 2007;53(1):160-173. |
R832721 (2007) R832721C005 (2006) |
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| Journal Article | DiMaggio Jr. PA, Floudas CA, Lu B, Yates III JR. A hybrid method for peptide identification using integer linear optimization, local database search, and quadrupole time-of-flight or OrbiTrap tandem mass spectrometry. Journal of Proteome Research 2008;7(4):1584-1593. |
R832721 (2008) |
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| Journal Article | DiMaggio Jr PA, McAllister SR, Floudas CA, Feng X-J, Rabinowitz JD, Rabitz HA. Optimal methods for re-ordering data matrices in systems biology and drug discovery applications. Biophysical Reviews and Letters 2008;3(1-2):19-42. |
R832721 (2008) |
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| Journal Article | DiMaggio Jr PA, McAllister SR, Floudas CA, Feng X-J, Rabinowitz JD, Rabitz HA. Biclustering via optimal re-ordering of data matrices in systems biology: rigorous methods and comparative studies. BMC Bioinformatics 2008;9:458-473. |
R832721 (2008) |
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| Journal Article | DiMaggio Jr. PA, McAllister SR, Floudas CA, Feng X-J, Rabinowitz JD, Rabitz HA. Enhancing molecular discovery using descriptor-free rearrangement clustering techniques for sparse data sets. AIChE Journal 2010;56(2):405-418. |
R832721 (Final) |
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| Journal Article | DiMaggio Jr PA, McAllister SR, Floudas CA, Feng X-J, Rabinowitz JD, Rabitz HA. A network flow model for biclustering via optimal re-ordering of data matrices. Journal of Global Optimization 2010;47(3):343-354. |
R832721 (2008) R832721 (Final) |
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| Journal Article | DiMaggio Jr. PA, Subramani A, Judson RS, Floudas CA. A novel framework for predicting in vivo toxicities from in vitro data using optimal methods for dense and sparse matrix re-ordering and logistic regression. Toxicological Sciences 2010;118(1):251-265. |
R832721 (Final) |
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| Journal Article | DiMaggio Jr. PA, Young NL, Baliban RC, Garcia BA, Floudas CA. A mixed integer linear optimization framework for the identification and quantification of targeted post-translational modifications of highly modified proteins using multiplexed electron transfer dissociation tandem mass spectrometry. Molecular and Cellular Proteomics 2009;8(11):2527-2543. |
R832721 (Final) |
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| Journal Article | Dong X, Foteinou PT, Calvano SE, Lowry SF, Androulakis IP. Agent-based modeling of endotoxin-induced acute inflammatory response in human blood leukocytes. PLoS One 2010;5(2):e9249. |
R832721 (Final) |
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| Journal Article | Doster F, Nordbotten JM, Celia MA. Hysteretic upscaled constitutive relationships for vertically integrated porous media flow. Computing and Visualization in Science 2012;15(4):147-161. |
R834385 (Final) |
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| Journal Article | Doster F, Nordbotten JM, Celia MA. Impact of capillary hysteresis and trapping on vertically integrated models for CO2 storage. Advances in Water Resources 2013;62(Part C):465-474. |
R834385 (Final) |
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| Journal Article | Efstathiou C, Isukapalli S, Georgopoulos P. A mechanistic modeling system for estimating large scale emissions and transport of pollen and co-allergens. Atmospheric Environment 2011;45(13):2260-2276. |
R832721 (Final) R834547 (2010) R834547 (Final) |
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| Journal Article | Ekins S, Chang C, Mani S, Krasowski MD, Reschly EJ, Iyer M, Kholodovych V, Ai N, Welsh WJ, Sinz M, Swaan PW, Patel R, Bachmann K. Human pregnane X receptor antagonists and agonists define molecular requirements for different binding sites. Molecular Pharmacology 2007;72(3):592-603. |
R832721 (2007) |
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| Journal Article | Ekins S, Kholodovych V, Ai N, Sinz M, Gal J, Gera L, Welsh WJ, Bachmann K, Mani S. Computational discovery of novel low micromolar human pregnane X receptor antagonists. Molecular Pharmacology 2008;74(3):662-672. |
R832721 (2008) |
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| Journal Article | Ekstrom EB, Morel FMM, Benoit JM. Mercury methylation independent of the acetyl-coenzyme A Pathway in sulfate-reducing bacteria. Applied and Environmental Microbiology 2003;69(9):5414-5422. |
R827915 (Final) |
not available |
| Journal Article | Elliot TR, Celia MA. Potential restrictions for CO2 sequestration sites due to shale and tight gas production. Environmental Science & Technology 2012;46(7):4223-4227. |
R834385 (2011) R834385 (2012) R834385 (Final) |
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| Journal Article | Elliot TR, Buscheck TA, Celia M. Active CO2 reservoir management for sustainable geothermal energy extraction and reduced leakage. Greenhouse Gases: Science and Technology 2013;3(1):50-65. |
R834385 (2012) R834385 (Final) |
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| Journal Article | Ervens B, Carlton AG, Turpin BJ, Altieri KE, Kreidenweis SM, Feingold G. Secondary organic aerosol yields from cloud-processing of isoprene oxidation products. Geophysical Research Letters 2008;35(2):L02816 (5 pp.). |
R831073 (Final) R833751 (2008) R833751 (2009) R833751 (2010) R833751 (Final) |
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| Journal Article | Ervens B, Turpin BJ, Weber RJ. Secondary organic aerosol formation in cloud droplets and aqueous particles (aqSOA):a review of laboratory, field and model studies. Atmospheric Chemistry and Physics 2011;11(21):11069-11102. |
R833751 (Final) |
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| Journal Article | Ervens B, Sorooshian A, Lim YB, Turpin BJ. Key parameters controlling OH-initiated formation of secondary organic aerosol in the aqueous phase (aqSOA). Journal of Geophysical Research-Atmospheres 2014;119(7):3997-4016. |
R835412 (Final) |
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| Journal Article | Fahey KM, Carlton AG, Pye HOT, Baek J, Hutzell WT, Stanier CO, Baker KR, Appel KW, Jaoui M, Offenberg JH. A framework for expanding aqueous chemistry in the Community Multiscale Air Quality (CMAQ) model version 5.1. Geoscientific Model Development 2017;10(4):1587-1605. |
R833865 (Final) R835041 (Final) |
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| Journal Article | Fan Y, Li H, Miguez-Macho G. Global patterns of groundwater table depth. Science 2013;339(6122):940-943. |
R834190 (2013) R834190 (Final) |
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| Journal Article | Fan Y. Groundwater in the Earth's critical zone: relevance to large-scale patterns and processes. Water Resources Research 2015;51(5):3052-3069. |
R834190 (Final) |
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| Journal Article | Fan Y, Miguez-Macho G, Jobbagy EG, Jackson RB, Otero-Casal C. Hydrologic regulation of plant rooting depth. Proceedings of the National Academy of Sciences of the United States of America 2017;114(40):10572-10577. |
R834190 (Final) |
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| Journal Article | Farkas CM, Moeller MD, Felder FA, Baker KR, Rodgers M, Carlton AG. Temporalization of peak electric generation particulate matter emissions during high energy demand days. Environmental Science & Technology 2015;49(7):4696-4704. |
R835041 (2014) R835041 (2015) R835041 (Final) |
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| Journal Article | Farkas CM, Moeller MD, Felder FA, Henderson BH, Carlton AG. High electricity demand in the northeast U.S.: PJM Reliability Network and peaking unit impacts on air quality. Environmental Science & Technology 2016;50(15):8375–8384. |
R835041 (Final) |
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| Journal Article | Feng X, Sanchis J, Reetz MT, Rabitz H. Enhancing the efficiency of directed evolution in focused enzyme libraries by the adaptive substituent reordering algorithm. Chemistry-A European Journal 2012;18(18):5646-5654. |
R832721 (Final) |
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| Journal Article | Floudas CA. Computational methods in protein structure prediction. Biotechnology and Bioengineering 2007;97(2):207-213. |
R832721 (2007) |
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| Journal Article | Foteinou PT, Yang E, Androulakis IP. Networks, biology and systems engineering: a case study in inflammation. Computers & Chemical Engineering 2009;33(12):2028-2041. |
R832721 (Final) |
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| Journal Article | Foteinou PT, Calvano SE, Lowry SF, Androulakis IP. Translational potential of systems-based models of inflammation. Clinical and Translational Science 2009;2(1):85-89. |
R832721 (2008) |
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| Journal Article | Foteinou PT, Calvano SE, Lowry SF, Androulakis IP. Modeling endotoxin-induced systemic inflammation using an indirect response approach. Mathematical Biosciences 2009;217(1):27-42. |
R832721 (2008) |
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| Journal Article | Foteinou PT, Calvano SE, Lowry SF, Androulakis IP. In silico simulation of corticosteroids effect on an NFkB-dependent physicochemical model of systemic inflammation. PLoS One 2009;4(3):e4706. |
R832721 (2008) |
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| Journal Article | Foteinou PT, Yang E, Saharidis GK, Ierapetritou MG, Androulakis IP. A mixed-integer optimization framework for the synthesis and analysis of regulatory networks. Journal of Global Optimization 2009;43(2-3):263-276. |
R832721 (2008) |
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| Journal Article | Foteinou PT, Calvano SE, Lowry SF, Androulakis IP. Multiscale model for the assessment of autonomic dysfunction in human endotoxemia. Physiological Genomics 2010;42(1):5-19. |
R832721 (Final) |
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| Journal Article | Foteinou P, Calvano S, Lowry S, Androulakis I. A physiological model for autonomic heart rate regulation in human endotoxemia. SHOCK 2011;35(3):229-239. |
R832721 (Final) |
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| Journal Article | Fung HK, Welsh WJ, Floudas CA. Computational de novo peptide and protein design: rigid templates versus flexible templates. Industrial & Engineering Chemistry Research 2008;47(4):993-1001. |
R832721 (2007) R832721 (2008) |
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| Journal Article | Fung HK, Floudas CA, Taylor MS, Zhang L, Morikis D. Toward full-sequence de novo protein design with flexible templates for human beta-defensin-2. Biophysical Journal 2008;94(2):584-599. |
R832721 (2008) |
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| Journal Article | Gasda SE, Nordbotten JM, Celia MA. Vertically-averaged approaches for CO2 migration with solubility trapping. Water Resources Research 2011;47(5):W05528. |
R834385 (2010) R834385 (2011) R834385 (2012) R834385 (Final) |
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| Journal Article | Gasda SE, Nordbotten JM, Celia MA. Application of simplified models to CO2 migration and immobilization in large-scale geological systems. International Journal of Greenhouse Gas Control 2012;9:72-84. |
R834385 (2011) R834385 (2012) R834385 (Final) |
|
| Journal Article | Georgopoulos PG. A multiscale approach for assessing the interactions of environmental and biological systems in a holistic health risk assessment framework. Water, Air, & Soil Pollution: Focus 2008;8(1):3-21. |
R832721 (2007) R832721 (2008) R832721C001 (2006) R832721C001 (2007) |
|
| Journal Article | Georgopoulos PG, Sasso AF, Isukapalli SS, Lioy PJ, Vallero DA, Okino M, Reiter L. Response to "µg/kg-day or µg/day? A commentary on Georgopoulos et al., JESEE 2008." Journal of Exposure Science & Environmental Epidemiology 2008;18(6):536-537 (author reply). |
R832721 (2008) |
|
| Journal Article | Georgopoulos PG, Wang S-W, Yang Y-C, Xue J, Zartarian VG, McCurdy T, Ozkaynak H. Biologically based modeling of multimedia, multipathway, multiroute population exposures to arsenic. Journal of Exposure Science & Environmental Epidemiology 2008;18(5):462-476. |
R832721 (2008) |
|
| Journal Article | Georgopoulos PG, Sasso AF, Isukapalli SS, Lioy PJ, Vallero DA, Okino M, Reiter L. Reconstructing population exposures to environmental chemicals from biomarkers: challenges and opportunities. Journal of Exposure Science & Environmental Epidemiology 2009;19(2):149-171. |
R832721 (2008) |
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| Journal Article | Gerecke DR, Chen M, Isukapalli SS, Gordon MK, Chang Y-C, Tong W, Androulakis IP, Georgopoulos PG. Differential gene expression profiling of mouse skin after sulfur mustard exposure: extended time response and inhibitor effect. Toxicology and Applied Pharmacology 2009;234(2):156-165. |
R832721 (2008) |
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| Journal Article | Gleason JA, Bielory L, Fagliano JA. Associations between ozone, PM2.5, and four pollen types on emergency department pediatric asthma events during the warm season in New Jersey:a case-crossover study. Environmental Research 2014;132:421-429. |
R834547 (2013) R834547 (2014) R834547 (Final) |
|
| Journal Article | Guo B, Bandilla KW, Doster F, Keilegavlen E, Celia MA. A vertically integrated model with vertical dynamics for CO2 storage. Water Resources Research 2014;50(8):6269-6284. |
R834385 (Final) |
|
| Journal Article | Guo H, Xu L, Bougiatioti A, Cerully KM, Capps SL, Hite Jr. JR, Carlton AG, Lee S-H, Bergin MH, Ng NL, Nenes A, Weber RJ. Fine-particle water and pH in the southeastern United States. Atmospheric Chemistry and Physics 2015;15(9):5211-5228. |
R834799 (2015) R834799 (2016) R834799 (Final) R834799C001 (2015) R834799C001 (Final) R835041 (2015) R835041 (Final) R835410 (2013) R835410 (2014) R835410 (2015) R835410 (Final) |
|
| Journal Article | Halai R, Bellows-Peterson M, Branchett W, Smadbeck J, Kieslich C, Croker D, Cooper M, Morikis D, Woodruff T, Floudas C, Monk P. Derivation of ligands for the complement C3a receptor from the C-termin of C5a. EUROPEAN JOURNAL OF PHARMACOLOGY 2014;745:176-181. |
R832721 (Final) |
|
| Journal Article | Halladay AK, Wilson DT, Wagner GC, Reuhl KR. Trimethyltin-induced alterations in behavior are linked to changes in PSA-NCAM expression. NeuroToxicology 2006;27(2):137-146. |
R829391 (2004) R829391 (2005) R829391 (2006) R829391 (Final) R829391C002 (2005) |
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| Journal Article | Hangauer A, Spinner G, Nikodem M, Wysocki G. High frequency modulation capabilities and quasi single‐sideband emission from a quantum cascade laser. Optics Express 2014;22(19):23439‐23455. |
R835137 (2014) R835137 (Final) |
|
| Journal Article | Hangauer A, Wysocki G. Gain compression and linewidth enhancement factor in mid‐IR quantum cascade lasers. IEEE Journal of Selected Topics in Quantum Electronics 2015;21(6):1200411 (11 pp.). |
R835137 (2014) R835137 (Final) |
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| Journal Article | Hangauer A, Westberg J, Zhang E, Wysocki G. Wavelength modulated multiheterodyne spectroscopy using Fabry-Perot quantum cascade lasers. Optics Express 2016;24(22):25298-25307. |
R835137 (Final) |
|
| Journal Article | Hawley HA, Mazurek MA. Oxocarboxylic acids as DNPH derivatives with a monolithic silica column and UV-VIS detection. American Laboratory Online 2008;1(3 Part 2):23-27. |
R832165 (2007) R832165 (2008) R832165 (Final) |
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| Journal Article | Hawley HA, Mazurek MA. An efficient method for atmospheric carbonyl compounds as 2,4-DNPH-carbonyl derivatives with HPLC UV-VIS detection using a silica monolithic column. American Laboratory Online 2009;2(3):1-8. |
R832165 (Final) |
|
| Journal Article | He C, Liu J, Carlton AG, Fan S, Horowitz LW, Levy II H, Tao S. Evaluation of factors controlling global secondary organic aerosol production from cloud processes. Atmospheric Chemistry and Physics Discussions 2012;12(10):26929-26961. |
R835041 (2012) |
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| Journal Article | He C, Liu J, Carlton AG, Fan S, Horowitz LW, Levy II H, Tao S. Evaluation of factors controlling global secondary organic aerosol production from cloud processes. Atmospheric Chemistry and Physics 2013;13(4):1913-1926. |
R835041 (Final) |
|
| Journal Article | Hodas N, Sullivan AP, Skog K, Keutsch FN, Collett Jr JL, Decsesari S, Facchini MC, Carlton AG, Laaksonen A, Turpin BJ. Aerosol liquid water driven by anthropogenic nitrate: implications for lifetimes of water‐soluble organic gases and potential for secondary organic aerosol formation. Environmental Science & Technology 2014;48(19):11127‐11136. |
R835041 (2014) R835041 (2015) R835041 (Final) |
|
| Journal Article | Hogrefe C, Isukapalli SS, Tang X, Georgopoulos PG, He S, Zalewsky EE, Hao W, Ku J-Y, Key T, Sistla G. Impact of biogenic emission uncertainties on the simulated response of ozone and fine particulate matter to anthropogenic emission reductions. Journal of the Air & Waste Management Association 2011;61(1):92-108. |
R834547 (2010) R834547 (Final) |
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| Journal Article | Hu Z, Yue X, Shi G, Yue Y, Crockett DP, Blair-Flynn J, Reuhl K, Tessarollo L, Zhou R. Corpus callosum deficiency in transgenic mice expressing a truncated ephrin-A receptor. Journal of Neuroscience 2003;23(34):10963-10970. |
R829391 (2004) R829391 (2005) R829391 (2006) R829391C002 (2005) |
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| Journal Article | Hu Z, Cooper M, Crockett DP, Zhou R. Differentiation of the midbrain dopaminergic pathways during mouse development. Journal of Comparative Neurology 2004;476(3):301-311. |
R829391 (2004) R829391 (2005) R829391 (2006) R829391C002 (2006) |
|
| Journal Article | Huang X, Bandilla KW, Celia MA, Bachu S. Basin-scale modeling of CO2 storage using models of varying complexity. International Journal of Greenhouse Gas Control 2014;20;73-86. |
R834385 (Final) |
|
| Journal Article | Isukapalli SS, Lioy PJ, Georgopoulos PG. Mechanistic modeling of emergency events: assessing the impact of hypothetical releases of anthrax. Risk Analysis 2008;28(3):723-740. |
R832721 (2008) |
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| Journal Article | Iyer VV, Ovacik MA, Androulakis IP, Roth CM, Ierapetritou MG. Transcriptional and metabolic flux profiling of triadimefon effects on cultured hepatocytes. Toxicology and Applied Pharmacology 2010;248(3):165-177. |
R832721 (Final) |
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| Journal Article | Iyer VV, Yang H, Ierapetritou MG, Roth CM. Effects of glucose and insulin on HepG2-C3A cell metabolism. Biotechnology and Bioengineering 2010;107(2):347-356. |
R832721 (2008) R832721 (Final) |
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| Journal Article | Izmailov S, Feng XJ, Li G, Rabitz H. A scalable algorithm for molecular property estimation in high dimensional scaffold-based libraries. Journal of Mathematical Chemistry 2012;50(7):1765-1790. |
R832721 (Final) |
|
| Journal Article | Jay JA, Murray KJ, Gilmour CC, Mason RP, Morel FMM, Roberts AL, Hemond HF. Mercury methylation by Desulfovibrio desulfuricans ND132 in the presence of polysulfides. Applied and Environmental Microbiology 2002;68(11):5741-5745 |
R824778 (Final) R827631 (Final) |
not available |
| Journal Article | Jay J, Morel FMM, Hemond HF. Mercury speciation in the presence of polysulfides. Environmental Science and Technology 2000;34:2196-2200. |
R824778 (Final) R827634 (Final) R827915 (1999) R827915 (2001) |
not available |
| Journal Article | Jiao Y, Su M, Chen M, Jia W, Chou Y, Huang Z, Yang N, Tong W. LC/ESI-MS method for the determination of trimetazidine in human plasma: application to a bioequivalence study on Chinese volunteers. Journal of Pharmaceutical and Biomedical Analysis 2007;43(5):1804-1807. |
R832721 (2007) |
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| Journal Article | Jornsten R, Ouyang M, Wang H-Y. A meta-data based method for DNA microarray imputation. BMC Bioinformatics 2007;8:109. |
R832721 (2007) |
|
| Journal Article | Jornsten R, Keles S. Mixture models with multiple levels, with application to the analysis of multifactor gene expression data. Biostatistics 2008;9(3):540-554. |
R832721 (2008) |
|
| Journal Article | Jornsten R. Simultaneous model selection via rate-distortion theory, with applications to cluster and significance analysis of gene expression data. Journal of Computational & Graphical Statistics 2009;18(3):613-639. |
R832721 (2007) |
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| Journal Article | Kang M, Nordbotten JM, Doster F, Celia MA. Analytical solutions for two-phase subsurface flow to a leaky fault considering vertical flow effects and fault properties. Water Resources Research 2014;50(4):3536-3552. |
R834385 (Final) |
|
| Journal Article | Kipen HM, Gandhi S, Rich DQ, Ohman-Strickland P, Laumbach R, Fan ZH, Chen L, Laskin DL, Zhang J, Madura K. Acute decreases in proteasome pathway activity after inhalation of fresh diesel exhaust or secondary organic aerosol. Environmental Health Perspectives 2011;119(5):658-663. |
R832144 (Final) |
|
| Journal Article | Kirkland JR, Lim YB, Tan Y, Altieri KE, Turpin BJ. Glyoxal secondary organic aerosol chemistry: effects of dilute nitrate and ammonium and support for organic radical-radical oligomer formation. Environmental Chemistry 2013;10(3):158-166. |
R833751 (Final) |
|
| Journal Article | Kortagere S, Chekmarev D, Welsh W, Ekins S. Hybrid Scoring and Classification Approaches to Predict Human Pregnane X Receptor Activators. PHARMACEUTICAL RESEARCH 2008;26(4):1001-1011 |
R832721 (Final) |
|
| Journal Article | Kortagere S, Chekmarev D, Welsh WJ, Ekins S. New predictive models for blood-brain barrier permeability of drug-like molecules. Pharmaceutical Research 2008;25(8):1836-1845. |
R832721 (2008) |
|
| Journal Article | Kortagere S, Ekins S, Welsh WJ. Halogenated ligands and their interactions with amino acids: implications for structure-activity and structure-toxicity relationships. Journal of Molecular Graphics and Modelling 2008;27(2):170-177. |
R832721 (2008) |
|
| Journal Article | Kortagere S, Welsh W, Morrisey J, Daly T, Ejigiri I, Sinnis P, Vaidya A, Bergman L. Structure-based Design of Novel Small-Molecule Inhibitors of Plasmodium falciparum. JOURNAL OF CHEMICAL INFORMATION AND MODELING 2010;50(5):840-849 |
R832721 (Final) |
|
| Journal Article | Kraepiel AML, Keller K, Chin HB, Malcolm EG, Morel FMM. Sources and variations of mercury in tuna. Environmental Science & Technology 2003;37(24):5551-5558. |
R827915 (Final) |
|
| Journal Article | Krakauer NY, Li H, Fan Y. Groundwater flow across spatial scales: importance for climate modeling. Environmental Research Letters 2014;9(3):034003 (7 pp.). |
R834190 (Final) |
|
| Journal Article | Kustu MD, Fan Y, Rodell M. Possible link between irrigation in the U.S. High Plains and increased summer streamflow in the Midwest. Water Resources Research 2011;47(3):W03522 (21 pp.). |
R834190 (2010) R834190 (2013) R834190 (Final) |
|
| Journal Article | LaLonde JD, Amyot M, Kraepiel AML, Morel FMM. Photooxidation of Hg(0) in Artificial and Natural Waters. Environmental Science and Technology 2001;35(7):1367-1372. |
R827915 (1999) |
not available |
| Journal Article | Lalonde JD, Amyot M, Orvoine J, Morel FM, Auclair J-C, Ariya PA. Photoinduced oxidation of Hg0(aq) in the waters from the St. Lawrence estuary. Environmental Science & Technology 2004;38(2):508-514. |
R827915 (Final) |
|
| Journal Article | Laumbach RJ, Kipen HM. Acute effects of motor vehicle traffic-related air pollution exposures on measures of oxidative stress in human airways. Annals of the New York Academy of Sciences 2010;1203(1):107-112. |
R832144 (Final) |
|
| Journal Article | Laumbach RJ, Rich DQ, Gandhi S, Amorosa L, Schneider S, Zhang J, Ohman-Strickland P, Gong J, Lelyanov O, Kipen HM. Acute changes in heart rate variability in subjects with diabetes following a highway traffic exposure. Journal of Occupational and Environmental Medicine 2010;52(3):324-331. |
R832144 (Final) |
|
| Journal Article | Laumbach R, Tong J, Zhang L, Ohman-Strickland P, Stern A, Fiedler N, Kipen H, Kelly-McNeil K, Lioy P, Zhang J. Quantification of 1-aminopyrene in human urine after a controlled exposure to diesel exhaust. Journal of Environmental Monitoring 2009;11(1):153-159. |
R832097 (Final) R832144 (Final) R832515 aka R832098 (2008) |
|
| Journal Article | Laumbach R, Romar K, Adamkiewicz G, Carlsten C, Charpin D, Chan W, de Nazelle A, Forastiere F, Goldstein J, Gumy S, Hallman W, Jerrett M, Kipen H, Pirozzi C, Polivka B, Radbel J, Shaffer R, Sin D, Viegi G. Personal Interventions for Reducing Exposure and Risk for Outdoor Air Pollution. ANNALS OF THE AMERICAN THORACIC SOCIETY 2021;18(9):1435-1443. |
R835759 (Final) |
|
| Journal Article | Lerapetritou MG, Georgopoulos PG, Roth CM, Androulakis IP. Tissue-level modeling of xenobiotic metabolism in liver: an emerging tool for enabling clinical translational research. Clinical and Translational Science 2009;2(3):228-237. |
R832721 (2008) |
|
| Journal Article | Li C, Ai N, Dinh G, Welsh W, Chen J. Human ADA3 regulates RARα transcriptional activity through direct contact between LxxLL motifs and the receptor coactivator pocket. NUCLEIC ACIDS RESEARCH 2010;38(16):5291-5303 |
R832721 (Final) |
|
| Journal Article | Li C-W, Ai N, Dinh GK, Welsh WJ, Chen JD. Human ADA3 regulates RARα transcriptional activity through direct contact between LxxLL motifs and the receptor coactivator pocket. Nucleic Acids Research 2010;38(16):5291-5303. |
R832721 (2008) R832721 (Final) |
|
| Journal Article | Li G, Rabitz H, Hu J, Chen Z, Ju Y. Regularized random-sampling high dimensional model representation (RS-HDMR). Journal of Mathematical Chemistry 2008;43(3):1207-1232. |
R832721 (2007) R832721 (2008) |
|
| Journal Article | Li G, Rabitz H, Yelvington PE, Oluwole OO, Bacon F, Kolb CE, Schoendorf J. Global sensitivity analysis for systems with independent and/or correlated inputs. Journal of Physical Chemistry A 2010;114(19):6022-6032. |
R832721 (2008) R832721 (Final) R835826 (Final) |
|
| Journal Article | Li G, Rabitz H. D-MORPH regression: application to modeling with unknown parameters more than observation data. Journal of Mathematical Chemistry 2010;48(4):1010-1035. |
R832721 (Final) |
|
| Journal Article | Lim H-J, Carlton AG, Turpin BJ. Isoprene forms secondary organic aerosol through cloud processing: model simulations. Environmental Science & Technology 2005;39(12):4441-4446. |
R831073 (2004) R831073 (2005) R831073 (2006) R831073 (Final) |
|
| Journal Article | Li M, McDow SR, Tollerud DJ, Mazurek MA. Seasonal abundance of organic molecular markers in urban particulate matter from Philadelphia, PA. Atmospheric Environment 2006;40(13):2260-2273. |
R832165 (2008) R832165 (Final) |
|
| Journal Article | Lim YB, Tan Y, Perri MJ, Seitzinger SP, Turpin BJ. Aqueous chemistry and its role in secondary organic aerosol (SOA) formation. Atmospheric Chemistry and Physics 2010;10(21):10521-10539. |
R833751 (2010) R833751 (Final) |
|
| Journal Article | Lim YB, Tan Y, Turpin BJ. Chemical insights, explicit chemistry, and yields of secondary organic aerosol from OH radical oxidation of methylglyoxal and glyoxal in the aqueous phase. Atmospheric Chemistry and Physics 2013;13(17):8651-8667. |
R833751 (Final) |
|
| Journal Article | Lim YB, Turpin BJ. Organic peroxide and OH formation in aerosol and cloud water: laboratory evidence for this aqueous chemistry. Atmospheric Chemistry and Physics Discussions 2015;15(12):17367-17396. |
R835412 (Final) |
|
| Journal Article | Lim YB, Turpin BJ. Laboratory evidence of organic peroxide and peroxyhemiacetal formation in the aqueous phase and implications for aqueous OH. Atmospheric Chemistry and Physics 2015;15(22):12867-12877. |
R835412 (Final) |
|
| Journal Article | Lin Y, Yassuda K, Assem M, Cline C, Barber J, Li C, Kholodovych V, Ai N, Chen J, Welsh W, Ekins S, Schuetz E. The Major Human Pregnane X Receptor PXR Splice Variant, PXR.2, Exhibits Significantly Diminished Ligand-Activated Transcriptional Regulation. DRUG METABOLISM AND DISPOSITION 2009;37(6):1295-1304. |
R832721 (Final) |
|
| Journal Article | Liu J, Horowitz LW, Fan S, Carlton AG, Levy II H. Global in-cloud production of secondary organic aerosols: implementation of a detailed chemical mechanism in the GFDL atmospheric model AM3. Journal of Geophysical Research-Atmospheres 2012;117(15):D15303. |
R835041 (2012) R835041 (Final) |
|
| Journal Article | Lu Y, Pignatello JJ. Demonstration of the 'Conditioning Effect' in soil organic matter in support of a pore deformation mechanism for sorption hysteresis. Environmental Science & Technology 2002;36(21):4553-4561 |
R825959 (Final) |
|
| Journal Article | Marmo BP, Carlton AG, Henderson BH. Partitioning of HNO3, H2O2 and SO2 to cloud ice: simulations with CMAQ. Atmospheric Environment 2013;88:239-246. |
R835041 (2014) R835041 (2015) R835041 (Final) |
|
| Journal Article | Mason RP, Reinfelder JR, Morel FMM. Bioaccumulation of mercury and methylmercury. Water, Air and Soil Pollution 1995;80:915-921. |
R824778 (1998) R824778 (Final) |
not available |
| Journal Article | Mason RP, Morel FMM. The role of microorganisms in elemental mercury formation in natural waters. Water, Air and Soil Pollution 1995;80:775-787. |
R824778 (1998) R824778 (Final) |
not available |
| Journal Article | Mason RP, Reinfelder JR, Morel FMM. Uptake, toxicity, and trophic transfer of mercury in a coastal diatom. Environmental Science & Technology 1996;30:1835-1845. |
R824778 (1998) R824778 (Final) |
not available |
| Journal Article | McAllister SR, Mickus BE, Klepeis JL, Floudas CA. Novel approach for α-helical topology prediction in globular proteins:generation of interhelical restraints. Proteins:Structure, Function, and Bioinformatics 2006;65(4):930-952. |
R832721 (2007) |
|
| Journal Article | McAllister SR, Floudas CA. α-helical topology prediction and generation of distance restraints in membrane proteins. Biophysical Journal 2008;95(11):5281-5295. |
R832721 (2008) R832721 (Final) |
|
| Journal Article | McAllister SR, Rajgaria R, Floudas CA. A path selection approach to global pairwise sequence alignment using integer linear optimization. Optimization: A Journal of Mathematical Programming and Operations Research 2008;57(1):101-111. |
R832721 (2008) |
|
| Journal Article | McAllister SR, Feng X-J, DiMaggio Jr PA, Floudas CA, Rabinowitz JD, Rabitz H. Descriptor-free molecular discovery in large libraries by adaptive substituent reordering. Bioorganic & Medicinal Chemistry Letters 2008;18(22):5967-5970. |
R832721 (2008) |
|
| Journal Article | McAllister SR, Floudas CA. Enhanced bounding techniques to reduce the protein conformational search space. Optimization Methods & Software 2009;24(4-5):837-855. |
R832721 (2008) |
|
| Journal Article | McAllister SR, DiMaggio Jr PA, Floudas CA. Mathematical modeling and efficient optimization methods for the distance-dependent rearrangement clustering problem. Journal of Global Optimization 2009;45(1):111-129. |
R832721 (2008) |
|
| Journal Article | McAllister SR, Floudas CA. An improved hybrid global optimization method for protein tertiary structure prediction. Computational Optimization and Applications 2010;45(2):377-413. |
R832721 (2008) R832721 (Final) |
|
| Journal Article | McDow SR, Mazurek MA, Li M, Alter L, Graham J, Felton HD, McKenna T, Pietarinen C, Leston A, Bailey S, Argao SWT. Speciation and atmospheric abundance of organic compounds in PM2.5 from the New York City area. I. Sampling network, sampler evaluation, molecular level blank evaluation. Aerosol Science and Technology 2008;42(1):50-63. |
R832165 (2008) R832165 (Final) |
|
| Journal Article | Meng Q, Nagarajan S, Son Y, Koutsoupias P, Bielory L. Asthma, oculonasal symptoms, and skin test sensitivity across National Health and Nutrition Examination Surveys. Annals of Allergy, Asthma & Immunology 2016;116(2):118-125.e5. |
R834547 (Final) |
|
| Journal Article | Miguez-Macho G, Fan Y. The role of groundwater in the Amazon water cycle: 1. Influence on seasonal streamflow, flooding and wetlands. Journal of Geophysical Research:Atmospheres 2012;117(D15):D15113 (30 pp.). |
R834190 (2012) R834190 (2013) R834190 (Final) |
|
| Journal Article | Miguez-Macho G, Fan Y. The role of groundwater in the Amazon water cycle: 2. Influence on seasonal soil moisture and evapotranspiration. Journal of Geophysical Research:Atmospheres 2012;117(D15):D15114 (27 pp.). |
R834190 (2012) R834190 (2013) R834190 (Final) |
|
| Journal Article | Morel FMM, Kraepiel AML, Amyot M. The chemical cycle and bioaccumulation of mercury. Annual Review Ecology and Systematics 1998;29:543-566. |
R824778 (1998) R824778 (Final) |
not available |
| Journal Article | Neimark AV, Ravikovitch PI, Vishnyakov A. Adsorption hysteresis in nanopores. Physical Review E 2000, Volume: 62 , Number: 2,A (AUG) , Page: R1493-R1496. |
R825959 (1999) R825959 (Final) |
not available |
| Journal Article | Neimark AV, Vishnyakov A. Gauge cell method for simulation studies of phase transitions in confined systems. Physical Review E 2000;62(4):4611-4622. |
R825959 (Final) |
not available |
| Journal Article | Neimark AV, Ravikovitch PI. Capillary condensation in MMS and pore structure characterization. Microporous and Mesoporous Materials 2001;44:697-707. |
R825959 (Final) |
not available |
| Journal Article | Neimark AV, Ravikovitch PI, Vishnyakov A. Inside the hysteresis loop: Multiplicity of internal states in confined fluids. Physical Review E 2002;65(3):031505/1-031505/6 Art No 031505 Part 1. |
R825959 (Final) |
not available |
| Journal Article | Newman DK, Beveridge TJ, Morel FMM. Precipitation of arsenic trisulfide by Desulfotomaculum auripigmentum. Applied and Environmental Microbiology 1997;63(5):2022-2028. |
R823222 (Final) |
|
| Journal Article | Newman DK, Kennedy EK, Coates JD, Ahmann D, Ellis DJ, Lovley DR, Morel FMM. Dissimilatory arsenate and sulfate reduction in Desulfotomaculum auripigmentum sp. nov. Archives of Microbiology 1997;168(5):380-388. |
R823222 (Final) |
|
| Journal Article | Newman DK, Ahmann D, Morel FMM. A brief review of microbial arsenate respiration. Geomicrobiology Journal 1998;15(4):255-268. |
R823222 (Final) |
|
| Journal Article | Nguyen TKV, Zhang Q, Jimenez JL, Pike M, Carlton AG. Liquid water: ubiquitous contributor to aerosol mass. Environmental Science & Technology Letters 2016;3(7):257-263. |
R835041 (Final) R835877 (2016) R835877 (2017) R835877 (2018) R835877 (2019) R835877 (Final) |
|
| Journal Article | Nguyen TT, Nowakowski RS, Androulakis IP. Unsupervised selection of highly coexpressed and noncoexpressed genes using a consensus clustering approach. OMICS 2009;13(3):219-237. |
R832721 (2008) |
|
| Journal Article | Nguyen TT, Almon RR, DuBois DC, Jusko WJ, Androulakis IP. Importance of replication in analyzing time-series gene expression data: corticosteroid dynamics and circadian patterns in rat liver. BMC Bioinformatics 2010;11:279. |
R832721 (Final) |
|
| Journal Article | Nguyen TT, Foteinou PT, Calvano SE, Lowry SF, Androulakis IP. Computational identification of transcriptional regulators in human endotoxemia. PLoS One 2011;6(5):e18889. |
R832721 (Final) |
|
| Journal Article | Nguyen T, Almon R, DuBOis D, Jko W, Androulakis I. Comparative analysis of acute and chronic corticosteroid pharmacogenomic effects in rat liver:Transcriptional dynamics and regulatory structures. BMC BIOINFORMATICS 2010;11:515. |
R832721 (Final) |
|
| Journal Article | Nguyen TKV, Capps SL, Carlton AG. Decreasing aerosol water is consistent with OC trends in the southeast U.S. Environmental Science & Technology 2015;49(13):7843-7850. |
R835041 (2015) R835041 (Final) |
|
| Journal Article | Nguyen TKV, Ghate VP, Carlton AG. Reconciling satellite aerosol optical thickness and surface fine particle mass through aerosol liquid water. Geophysical Research Letters 2016;43(22):11903–11912. |
R835041 (Final) |
|
| Journal Article | Nogues JP, Court B, Dobossy M, Nordbotten JM, Celia MA. A methodology to estimate maximum probable leakage along old wells in a geological sequestration operation. International Journal of Greenhouse Gas Control 2012;7:39-47. |
R834385 (2011) R834385 (2012) R834385 (Final) |
|
| Journal Article | Oelschlaeger P, Ai N, DuPrez KT, Welsh WJ, Toney JH. Evolving carbapenemases: can medicinal chemists advance one step ahead of the coming storm? Journal of Medicinal Chemistry 2010;53(8):3013-3027. |
R832721 (Final) |
|
| Journal Article | Orman M, Arai K, Yarmush M, Androulakis I, Berthiaume F, Ierapetritou M. Metabolic flux determination in perfused livers by mass balance analysis: Effect of fasting. BIOTECHNOLOGY AND BIOENGINEERING 2010;107(5):825-835 |
R832721 (Final) |
|
| Journal Article | Ortiz-Montalvo DL, Lim YB, Perri MJ, Seitzinger SP, Turpin BJ. Volatility and yield of glycolaldehyde SOA formed through aqueous photochemistry and droplet evaporation. Aerosol Science and Technology 2012;46(9):1002-1014. |
R833751 (Final) |
|
| Journal Article | Ortiz-Montalvo DL, Häkkinen SA, Schwier AN, Lim YB, McNeill VF, Turpin BJ. Ammonium addition (and aerosol pH) has a dramatic impact on the volatility and yield of glyoxal secondary organic aerosol. Environmental Science & Technology 2014;48(1):255-262. |
R833751 (Final) |
|
| Journal Article | Ortiz-Montalvo DL, Schwier AN, Lim YB, McNeill VF, Turpin BJ. Volatility of methylglyoxal cloud SOA formed through OH radical oxidation and droplet evaporation. Atmospheric Environment 2016;130:145-152. |
R833751 (Final) |
|
| Journal Article | Ovacik MA, Androulakis IP. On the potential for integrating gene expression and metabolic flux data. Current Bioinformatics 2008;3(3):142-148. |
R832721 (2008) |
|
| Journal Article | Ovacik MA, Sukumaran S, Almon RR, DuBois DC, Jusko WJ, Androulakis IP. Circadian signatures in rat liver: from gene expression to pathways. BMC Bioinformatics 2010;11:540. |
R832721 (2008) R832721 (Final) |
|
| Journal Article | Ovacik MA, Androulakis IP. Enzyme sequence similarity improves the reaction alignment method for cross-species pathway comparison. Toxicology and Applied Pharmacology 2013;271(3):363-371. |
R832721 (2008) R832721 (Final) |
|
| Journal Article | Ovacik MA, Sen B, Euling SY, Gaido KW, Ierapetritou MG, Androulakis IP. Pathway modeling of microarray data: a case study of pathway activity changes in the testis following in utero exposure to dibutyl phthalate (DBP). Toxicology and Applied Pharmacology 2013;271(3):386-394. |
R832721 (Final) |
|
| Journal Article | Parikh HM, Carlton AG, Zhou Y, Zhang H, Kamens RM, Vizuete W. Modeling secondary organic aerosol formation from xylene and aromatic mixtures using a dynamic partitioning approach incorporating particle aqueous-phase chemistry (II). Atmospheric Environment 2012;56:250-260. |
R835041 (2012) R835041 (Final) |
|
| Journal Article | Pettit AP, Brooks A, Laumbach R, Fiedler N, Wang Q, Strickland PO, Madura K, Zhang J, Kipen HM. Alteration of peripheral blood monocyte gene expression in humans following diesel exhaust inhalation. Inhalation Toxicology 2012;24(3):172-181. |
R832144 (Final) |
|
| Journal Article | Phelps CD, Young LY. Anaerobic biodegradation of gasoline components: A review. Advances in Agronomy 2000;70:329-358. |
R825511C007 (Final) |
not available |
| Journal Article | Piazza M, Feng X-J, Rabinowitz JD, Rabitz H. Diverse metabolic model parameters generate similar methionine cycle dynamics. Journal of Theoretical Biology 2008;251(4):628-639. |
R832721 (2008) |
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| Journal Article | Pokhrel YN, Fan Y, Miguez-Macho G, Yeh PJ-F, Han S-C. The role of groundwater in the Amazon water cycle:3. Influence on terrestrial water storage computations and comparison with GRACE. Journal of Geophysical Research:Atmospheres 2013;118(8):3233-3244. |
R834190 (2013) R834190 (Final) |
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| Journal Article | Pokhrel YN, Fan Y, Miguez-Macho G. Potential hydrologic changes in the Amazon by the end of the 21st century and the groundwater buffer. Environmental Research Letters 2014;9(8):084004 (12 pp.). |
R834190 (Final) |
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| Journal Article | Polidori A, Turpin BJ, Lim H-J, Cabada JC, Subramanian R, Pandis SN, Robinson AL. Local and regional secondary organic aerosol: insights from a year of semi-continuous carbon measurements at Pittsburgh. Aerosol Science and Technology 2006;40(10):861-872. |
R831073 (2005) R831073 (2006) R831073 (Final) |
|
| Journal Article | Polidori A, Turpin BJ, Davidson CI, Rodenburg LA, Maimone F. Organic PM2.5: fractionation by polarity, FTIR spectroscopy, and OM/OC ratio for the Pittsburgh aerosol. Aerosol Science and Technology 2008;42(3):233-246. |
R831073 (Final) |
|
| Journal Article | Pratt KA, Fiddler MN, Shepson PB, Carlton AG, Surratt JD. Organosulfates in cloud water above the Ozarks’ isoprene source region. Atmospheric Environment 2013;77:231-238. |
R835041 (2013) R835041 (Final) |
|
| Journal Article | Prozialeck WC, Grunwald GB, Dey PM, Reuhl KR, Parrish AR. Cadherins and NCAM as potential targets in metal toxicity. Toxicology and Applied Pharmacology 2002;182(3):255-265. |
R829391 (2004) R829391 (2005) R829391 (2006) R829391C002 (2004) |
|
| Journal Article | Pye HOT, Murphy BN, Xu L, Ng NL, Carlton AG, Guo H, Weber R, Vasilakos P, Appel KW, Budisulistiorini SH, Surratt JD, Nenes A, Hu W, Jimenez JL, Isaacman-VanWertz G, Misztal PK, Goldstein AH. On the implications of aerosol liquid water and phase separation for organic aerosol mass. Atmospheric Chemistry & Physics 2017;17(1):343-369. |
R835403 (2015) R835403 (Final) R835404 (2015) R835404 (Final) R835407 (Final) R835410 (Final) R835412 (Final) R835877 (2016) R835877 (2017) R835877 (2018) R835877 (2019) |
|
| Journal Article | Rabinowitz JD, Hsiao JJ, Gryncel KR, Kantrowitz ER, Feng X-J, Li G, Rabitz H. Dissecting enzyme regulation by multiple allosteric effectors: nucleotide regulation of aspartate transcarbamoylase. Biochemistry 2008;47(21):5881-5888. |
R832721 (2008) |
|
| Journal Article | Rajgaria R, McAllister SR, Floudas CA. A novel high resolution Cα—Cα distance dependent force field based on a high quality decoy set. Proteins 2006;65(3):726-741. |
R832721 (2007) R832721C005 (2006) R832721C005 (2007) |
|
| Journal Article | Rajgaria R, McAllister SR, Floudas CA. Distance dependent centroid to centroid force fields using high resolution decoys. Proteins: Structure, Function, Bioinformatics 2008;70(3):950-970. |
R832721 (2008) |
|
| Journal Article | Rajgaria R, McAllister SR, Floudas CA. Towards accurate residue-residue hydrophobic contact prediction for α helical proteins via integer linear optimization. Proteins: Structure, Function, Bioinformatics 2009;74(4):929-947. |
R832721 (2008) R832721 (Final) |
|
| Journal Article | Rajgaria R, Wei Y, Floudas CA. Contact prediction for beta and alpha-beta proteins using integer linear optimization and its impact on the first principles 3D structure prediction method ASTRO-FOLD. Proteins 2010;78(8):1825-1846. |
R832721 (Final) |
|
| Journal Article | Ravikovitch PI, Neimark AV. Density functional theory of absorption hysteresis and nenopose characterization. Studies in Surface Science and Catalysis 2000;128:51-60. |
R825959 (Final) |
not available |
| Journal Article | Ravikovitch PI, Vishnyakov A, Russo R, Neimark AV. Unified approach to pore size characterization of microporous carbonaceous materials from nitrogen, argon and carbon dioxide adsorption isotherms. Langmuir 2000;16(5):2311-2320. |
R825959 (1999) R825959 (Final) |
not available |
| Journal Article | Ravikovitch PI, Neimark AV. Characterization of micro- and mesoporosity in SBA-15 materials from adsorption data by the NLDFT method. Journal of Physical Chemistry B 2001;105(29):6817-6823. |
R825959 (Final) |
not available |
| Journal Article | Ravikovitch PI, Neimark AV. Characterization of nanoporous materials from adsorption and desorption isotherms. Colloids and Surfaces A - Physicochemical and Engineering Aspects 2001;187:11-21. |
R825959 (Final) |
not available |
| Journal Article | Ravikovitch PI, Vishnyakov A, Neimark AV. Density functional theories and molecular simulations of adsorption and phase transitions in nanopores. Physical Review E 2001;64(1):011602/1-011602/19. |
R825959 (Final) |
not available |
| Journal Article | Reschly EJ, Ai N, Ekins S, Welsh WJ, Hagey LR, Hofmann AF, Krasowski MD. Evolution of the bile salt nuclear receptor FXR in vertebrates. Journal of Lipid Research 2008;49(7):1577-1587. |
R832721 (2008) |
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| Journal Article | Reschly EJ, Ai N, Welsh WJ, Ekins S, Hagey LR, Krasowski MD. Ligand specificity and evolution of liver X receptors. Journal of Steroid Biochemistry and Molecular Biology 2008;110(1-2):83-94. |
R832721 (2008) |
|
| Journal Article | Rich DQ, Freudenberger RS, Ohman-Strickland P, Cho Y, Kipen HM. Right heart pressure increases after acute increases in ambient particulate concentration. Environmental Health Perspectives 2008;116(9):1167-1171. |
R832144 (2007) R832144 (Final) |
|
| Journal Article | Saar S, Thomas V. Toward trash that thinks: product tags for environmental management. Journal of Industrial Ecology 2002;6(2):133-146. |
R829585 (2003) R829585 (2004) R829585 (Final) |
|
| Journal Article | Saar S, Stutz M, Thomas VM. Towards intelligent recycling: a proposal to link bar codes to recycling information. Resources, Conservation and Recycling 2004;41(1):15-22. |
R829585 (2003) R829585 (2004) R829585 (Final) |
|
| Journal Article | Saharidis GK, Ierapetritou MG. Resolution method for mixed integer bi-level linear problems based on decomposition technique. Journal of Global Optimization 2009;44(1):29-51. |
R832721 (2008) |
|
| Journal Article | Saharidis G, Androulakis I, Ierapetritou M. Model building using bi-level optimization. JOURNAL OF GLOBAL OPTIMIZATION 2011;49(1):49-67. |
R832721 (Final) |
|
| Journal Article | Sareen N, Carlton AG, Surratt JD, Gold A, Lee B, Lopez-Hilfiker FD, Mohr C, Thornton JA, Zhang Z, Lim YB, Turpin BJ. Identifying precursors and aqueous organic aerosol formation pathways during the SOAS campaign. Atmospheric Chemistry and Physics 2016;16(22):14409-14420. |
R835412 (Final) |
|
| Journal Article | Sareen N, Waxman EM, Turpin BJ, Volkamer R, Carlton AG. Potential of aerosol liquid water to facilitate organic aerosol formation: assessing knowledge gaps about precursors and partitioning. Environmental Science & Technology 2017;51(6):3327-3335. |
R835041 (Final) R835412 (Final) |
|
| Journal Article | Sasso AF, Isukapalli SS, Georgopoulos PG. A generalized physiologically-based toxicokinetic modeling system for chemical mixtures containing metals. Theoretical Biology and Medical Modelling 2010;7:17. |
R832721 (Final) |
|
| Journal Article | Sasso AF, Georgopoulos PG, Isukapalli SS, Krishnan K. Bayesian analysis of a lipid-based physiologically based toxicokinetic model for a mixture of PCBs in rats. Journal of Toxicology 2012;2012:895391, doi:10.1155/2012/895391. |
R832721 (2008) |
|
| Journal Article | Scheff JD, Almon RR, DuBois DC, Jusko WJ, Androulakis IP. A new symbolic representation for the identification of informative genes in replicated microarray experiments. OMICS–A Journal of Integrative Biology 2010;14(3):239-248. |
R832721 (Final) |
|
| Journal Article | Schnackenberg LK, Chen M, Sun J, Holland RD, Dragan Y, Tong W, Welsh W, Beger RD. Evaluations of the trans-sulfuration pathway in multiple liver toxicity studies. Toxicology and Applied Pharmacology 2009;235(1):25-32. |
R832721 (2008) |
|
| Journal Article | Siirla-Woodburn E, Maxwell R. A heterogeneity model comparison of highly resolved statistically anisotropic aquifers. ADVANCES IN WATER RESOURCES 2015;75:53-66. |
R834385 (Final) |
|
| Journal Article | Singh K, Axelrod S, Bielory L. The epidemiology of ocular and nasal allergy in the United States, 1988-1994. Journal of Allergy and Clinical Immunology 2010;126(4):778-783. |
R834547 (Final) |
|
| Journal Article | Smith CJ, Wang W, Wysocki G. Real‐time calibration of laser absorption spectrometer using spectral correlation performed with an in‐line gas cell. Optics Express 2013;21(19):22488‐22503. |
R835137 (2013) R835137 (Final) |
|
| Journal Article | Stamatelos SK, Brinkerhoff CJ, Isukapalli SS, Georgopoulos PG. Mathematical model of uptake and metabolism of arsenic(III) in human hepatocytes – incorporation of cellular antioxidant response and threshold-dependent behavior. BMC Systems Biology 2011;5:16. |
R832721 (Final) |
|
| Journal Article | Stamatelos S, Androulakis I, Kong A, Georgopoulos P. A semi-mechanistic integrated toxicokinetic-toxicodynamic (TK/TD) model for arsenic(III) in hepatocytes. JOURNAL OF THEORETICAL BIOLOGY 2013;317:244-256 |
R832721 (Final) |
|
| Journal Article | Subramani A, DiMaggio P, Floudas C. Selecting High Quality Protein Structures from Diverse Conformational Ensembles. BIOPHYSICAL JOURNAL 2009;97(6):1728-1736. |
R832721 (Final) |
|
| Journal Article | Sun JJ, Abdeljabbar DM, Clarke N, Bellows ML, Floudas CA, Link AJ. Reconstitution and engineering of apoptotic protein interactions on the bacterial cell surface. Journal of Molecular Biology 2009;394(2):297-305. |
R832721 (Final) |
|
| Journal Article | Sunil VR, Laumbach RJ, Patel KJ, Turpin BJ, Lim H-J, Kipen HM, Laskin JD, Laskin DL. Pulmonary effects of inhaled limonene ozone reaction products in elderly rats. Toxicology and Applied Pharmacology 2007;222(2):211-220. |
R832144 (2007) R832144 (Final) |
|
| Journal Article | Sunil VR, Patel KJ, Mainelis G, Turpin BJ, Ridgely S, Laumbach RJ, Kipen HM, Nazarenko Y, Veleeparambil M, Gow AJ, Laskin JD, Laskin DL. Pulmonary effects of inhaled diesel exhaust in aged mice. Toxicology and Applied Pharmacology 2009;241(3):283-293. |
R832144 (Final) |
|
| Journal Article | Tan MP, Smith EN, Broach JR, Floudas CA. Microarray data mining: a novel optimization-based approach to uncover biologically coherent structures. BMC Bioinformatics 2008;9:268-289. |
R832721 (2008) |
|
| Journal Article | Tan Y, Perri MJ, Seitzinger SP, Turpin BJ. Effects of precursor concentration and acidic sulfate in aqueous glyoxal–OH radical oxidation and implications for secondary organic aerosol. Environmental Science & Technology 2009;43(21):8105-8112. |
R833751 (2009) R833751 (2010) R833751 (Final) |
|
| Journal Article | Tan Y, Carlton AG, Seitzinger SP, Turpin BJ. SOA from methylglyoxal in clouds and wet aerosols: measurement and prediction of key products. Atmospheric Environment 2010;44(39):5218-5226. |
R833751 (2010) R833751 (Final) |
|
| Journal Article | Tan Y, Lim YB, Altieri KE, Seitzinger SP, Turpin BJ. Mechanisms leading to oligomers and SOA through aqueous photooxidation: insights from OH radical oxidation of acetic acid and methylglyoxal. Atmospheric Chemistry and Physics 2012;12(2):801-813. |
R833751 (Final) |
|
| Journal Article | Taylor MS, Fung HK, Rajgaria R, Filizola M, Weinstein H, Floudas CA. Mutations affecting the oligomerization interface of G-protein-coupled receptors revealed by a novel de novo protein design framework. Biophysical Journal 2008;94(7):2470-2481. |
R832721 (2008) |
|
| Journal Article | Thomas VM. Product self-management: evolution in recycling and reuse. Environmental Science & Technology 2003;37(23):5297-5302. |
R829585 (2003) R829585 (2004) R829585 (Final) |
|
| Journal Article | Thomas VM. A universal code for environmental management of products. Resources, Conservation and Recycling 2009;53(7):400-408. |
R829585 (Final) |
|
| Journal Article | Villarante NR, Armenante PM, Quibuyen TAO, Fava F, Kafkewitz D. Dehalogenation of dichloroethene in a contaminated soil: fatty acids and alcohols as electron donors and an apparent requirement for tetrachloroethene. Applied Microbiology and Biotechnology 2001;55(2):239-247. |
R825511C037 (Final) |
not available |
| Journal Article | Vishnyakov A, Ravikovitch PI, Neimark, AV. Molecular level models for CO2 sorption in nanopores. Langmuir 1999;15:8736-8742. |
R825959 (1998) R825959 (1999) R825959 (Final) |
|
| Journal Article | Vishnyakov A, Debenedetti PG, Neimark AV. Statistical geometry of cavities in a metastable confined fluid. Physical Review E 2000;62(1):538-544. |
R825959 (Final) |
not available |
| Journal Article | Wagner GC, Reuhl KR, Cheh M, McRae P, Halladay AK. A new neurobehavioral model of autism in mice: pre- and postnatal exposure to sodium valproate. Journal of Autism and Developmental Disorders 2006;36(6):779-793. |
R829391 (2004) R829391 (2005) R829391 (2006) R829391 (Final) R829391C002 (2006) R829391C003 (2004) |
|
| Journal Article | Wang CY, Ai N, Arora S, Erenrich E, Nagarajan K, Zauhar R, Young D, Welsh WJ. Identification of previously unrecognized antiestrogenic chemicals using a novel virtual screening approach. Chemical Research in Toxicology 2006;19(12):1595-1601. |
R832721C004 (2006) R832721C004 (2007) |
not available |
| Journal Article | Wang Y, Soskind MG, Wang W, Wysocki G. High‐resolution multi‐heterodyne spectroscopy based on Fabry‐Perot quantum cascade lasers. Applied Physics Letters 2014;104(3):031114. |
R835137 (2013) R835137 (2014) R835137 (Final) |
|
| Journal Article | White JC, Hunter M, Pignatello JJ, Nam KP, Alexander M. Correlation between the biological and physical availabilities of phenanthrene in soils and soil humin in aging experiments. Environmental Toxicology Chemistry 1999;18(8):1720-1727. |
R825959 (1998) R825959 (1999) R825959 (Final) |
not available |
| Journal Article | White JC, Hunter M, Pignatello JJ, Alexander M. Increase in the bioavailability of aged phenanthrene in soils by competitive displacement with pyrene. Environmental Toxicology and Chemistry 1999;18(8):1728-1732. |
R825959 (1998) R825959 (1999) R825959 (Final) |
not available |
| Journal Article | White JC, Pignatello JJ. Influence of bisolute competition on the desorption kinetics of polycyclic aromatic hydrocarbons in soil. Environmental Science & Technology 1999;33(23):4294-4298. |
R825959 (1998) R825959 (1999) R825959 (Final) |
not available |
| Journal Article | Wilson DT, Polunas MA, Zhou R, Halladay AK, Lowndes HE, Reuhl KR. Methylmercury alters Eph and ephrin expression during neuronal differentiation of P19 embryonal carcinoma cells. NeuroToxicology 2005;26(4):661-674. |
R829391 (2004) R829391 (2005) R829391 (2006) R829391 (Final) R829391C002 (2005) |
|
| Journal Article | Xue J, Zartarian V, Wang S-W, Liu SV, Georgopoulos P. Probabilistic modeling of dietary arsenic exposure and dose and evaluation with 2003-2004 NHANES data. Environmental Health Perspectives 2010;118(3):345-350. |
R832721 (Final) |
|
| Journal Article | Yang EH, Almon RR, Dubois DC, Jusko WJ, Androulakis IP. Identification of global transcriptional dynamics. PLoS One 2009;10;4(7):e5992. |
R832721 (2008) |
|
| Journal Article | Yang E, Maguire T, Yarmush ML, Berthiaume F, Androulakis IP. Bioinformatics analysis of the early inflammatory response in a rat thermal injury model. BMC Bioinformatics 2007;8:10. |
R832721 (2007) |
|
| Journal Article | Yang E, Simcha D, Almon RR, Dubois DC, Jusko WJ, Androulakis IP. Context specific transcription factor prediction. Annals of Biomedical Engineering 2007;35(6):1053-1067. |
R832721 (2007) |
|
| Journal Article | Yang E, Foteinou PT, King KR, Yarmush ML, Androulakis IP. A novel non-overlapping bi-clustering algorithm for network generation using living cell array data. Bioinformatics 2007;23(17):2306-2313. |
R832721 (2007) |
|
| Journal Article | Yang E, Maguire T, Yarmush ML, Androulakis IP. Informative gene selection and design of regulatory networks using integer optimization. Computers & Chemical Engineering 2008;32(4-5):633-649. |
R832721 (2007) R832721 (2008) |
|
| Journal Article | Yang E, Maguire TJ, Yarmush ML, Berthiaume F, Androulakis IP. Identification of regulatory mechanisms of the hepatic response to thermal injury. Computers & Chemical Engineering 2008;32(1-2):356-369. |
R832721 (2007) R832721 (2008) |
|
| Journal Article | Yang E, Almon RR, DuBois DC, Jusko WJ, Androulakis IP. Extracting global system dynamics of corticosteroid genomic effects in rat liver. Journal of Pharmacology and Experimental Therapeutics 2008;324(3):1243-1254. |
R832721 (2007) R832721 (2008) |
|
| Journal Article | Yang E, Androulakis IP. Assessing and selecting gene expression signals based upon the quality of the measured dynamics. BMC Bioinformatics 2009;10:55-67. |
R832721 (2008) |
|
| Journal Article | Yang E, Yarmush ML, Androulakis IP. Transcription factor network reconstruction using the living cell array. Journal of Theoretical Biology 2009;256(3):393-407. |
R832721 (2008) |
|
| Journal Article | Yang H, Roth CM, Ierapetritou MG. A rational design approach for amino acid supplementation in hepatocyte culture. Biotechnology and Bioengineering 2009;103(6):1176-1191. |
R832721 (2008) R832721 (Final) |
|
| Journal Article | Yang H, Ierapetritou MG, Roth CM. Effects of amino acid transport limitations on cultured hepatocytes. Biophysical Chemistry 2010;152(1-3):89-98. |
R832721 (2008) R832721 (Final) |
|
| Journal Article | Yang H, Roth CM, Ierapetritou MG. Analysis of amino acid supplementation effects on hepatocyte cultures using flux balance analysis. OMICS 2011;15(7-8):449-460. |
R832721 (2008) |
|
| Journal Article | Yang Y, Xu X, Georgopoulos PG. A Bayesian population PBPK model for multiroute chloroform exposure. Journal of Exposure Science & Environmental Epidemiology 2010;20(4):326-341. |
R832721 (2008) R832721 (Final) |
|
| Journal Article | Yuan J, Doucette C, Fowler W, Feng X, Piazza M, Rabitz H, Wingreen N, Rabinowitz J. Metabolomics-driven quantitative analysis of ammonia assimilation in E. coli. MOLECULAR SYSTEMS BIOLOGY 2009;5(302). |
R832721 (Final) |
|
| Journal Article | Zhang C, Meng F, Wang C, Guo H, Fan M, Liu S, Zhou R, He F. Identification of a novel alternative splicing form of human netrin-4 and analyzing the expression patterns in adult rat brain. Molecular Brain Research 2004;130(1-2):68-80. |
R829391 (2004) R829391 (2005) R829391 (2006) R829391C002 (2006) |
|
| Journal Article | Zhang Y, Isukapalli SS, Bielory L, Georgopoulos PG. Bayesian analysis of climate change effects on observed and projected airborne levels of birch pollen. Atmospheric Environment 2013;68:64-73. |
R834547 (2011) R834547 (2012) R834547 (2014) R834547 (Final) |
|
| Journal Article | Zhang Y, Bielory L, Georgopoulos PG. Climate change effect on Betula (birch) and Quercus (oak) pollen seasons in the United States. International Journal of Biometeorology 2014;58(5):909-919. |
R834547 (2011) R834547 (2012) R834547 (2013) R834547 (2014) R834547 (Final) |
|
| Journal Article | Zhang Y, Bielory L, Mi Z, Cai T, Robock A, Georgopoulos P. Allergenic pollen season variations in the past two decades under changing climate in the United States. Global Change Biology 2015;21(4):1581-1589. |
R834547 (2012) R834547 (2013) R834547 (2014) R834547 (Final) |
|
| Journal Article | Zhang Y, Bielory L, Cai T, Mi Z, Georgopoulos P. Predicting onset and duration of airborne allergenic pollen season in the United States. Atmospheric Environment 2015;103:297-306. |
R834547 (2012) R834547 (2013) R834547 (2014) R834547 (Final) |
|
| Journal Article | Zhao D, Pignatello JJ, White JC, Braida W, Ferrandino F. Dual-mode modeling of competitive and concentration-dependent sorption and desorption kinetics of polycyclic aromatic hydrocarbons in soils. Water Resources Research 2001;37(8):2205-2212. |
R825959 (Final) |
not available |
| Journal Article | Ziska L, Knowlton K, Rogers C, Dalan D, Tierney N, Elder MA, Filley W, Shropshire J, Ford LB, Hedberg C, Fleetwood P, Hovanky KT, Kavanaugh T, Fulford G, Vrtis RF, Patz JA, Portnoy J, Coates F, Bielory L, Frenz D. Recent warming by latitude associated with increased length of ragweed pollen season in central North America. Proceedings of the National Academy of Sciences of the United States of America 2011;108(10):4248-4251. |
R834547 (2010) R834547 (Final) |
|
| Journal Article | Zuckerman O, Luster SH, Bielory L. Internet searches and allergy:temporal variation in regional pollen counts correlates with Google searches for pollen allergy related terms. Annals of Allergy, Asthma & Immunology 2014;113(4):486-488. |
R834547 (Final) |
|
The perspectives, information and conclusions conveyed in research project abstracts, progress reports, final reports, journal abstracts and journal publications convey the viewpoints of the principal investigator and may not represent the views and policies of ORD and EPA. Conclusions drawn by the principal investigators have not been reviewed by the Agency.