Science Inventory

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Stein, E., C. Jerde, E. Andruszkiewicz Allan, A. Sepulveda, C. Abbott, M. Baerwald, J. Darling, K. Goodwin, R. Meyer, M. Timmers, AND P. Thielen. Critical Considerations for Communicating Environmental DNA Science. Environmental DNA. John Wiley & Sons, Inc., Hoboken, NJ, 6(1):e472, (2024). https://doi.org/10.1002/edn3.472

Darling, J., K. Carney, P. Katrina M, AND G. Ruiz. What’s in your ballast water? Oversampling and DNA metabarcoding reveal deep diversity in a single tank. International Conference on Marine Bioinvasions, Baltimore, MD, May 15 - 19, 2023.

Smucker, N., E. Pilgrim, H. Wu, C. Nietch, J. Darling, M. Molina, B. Johnson, AND L. Yuan. Characterizing temporal variability in streams supports nutrient indicator development using diatom and bacterial DNA metabarcoding. SCIENCE OF THE TOTAL ENVIRONMENT. Elsevier BV, AMSTERDAM, Netherlands, 831:154960, (2022). https://doi.org/10.1016/j.scitotenv.2022.154960

Pilgrim, E., N. Smucker, C. Nietch, J. Darling, H. Wu, AND M. Molina. Comparison of stream periphyton assemblages as indicators of nutrient conditions. Joint Aquatic Sciences Meeting 2022, Grand Rapids, MI, May 14 - 20, 2022.

Pilgrim, E., N. Smucker, H. Wu, J. Martinson, C. Nietch, M. Molina, J. Darling, AND B. Johnson. Developing Indicators of Nutrient Pollution in Streams Using 16S rRNA Gene Metabarcoding of Periphyton-Associated Bacteria. WATER. MDPI, Basel, Switzerland, 14(15):2361, (2022). https://doi.org/10.3390/w14152361

Smucker, N., E. Pilgrim, L. Yuan, R. Mitchell, A. Pollard, C. Nietch, J. Darling, AND D. Carlisle. Diatom-environment relationships in streams of the United States based on DNA metabarcoding. 2022 Joint Aquatic Sciences Meeting, Grand Rapids, MI, May 14 - 20, 2022.

Morisette, J., R. lance, T. Leskey, Y. Passamaneck, A. Piaggio, B. Rector, A. Sepulveda, M. Smith, C. Stepien, T. Wilcox, K. Brantley, S. Burgiel, W. Daniel, J. Darling, J. Davis, T. Franklin, K. Gaddis, AND M. Hunter. Environmental DNA as a Tool for Invasive Species Detection and Management. U.S. Department of the Interior, Tuscaloosa, AL, 2022.

Darling, J. Environmental DNA as a tool for invasive species surveillance. UN Science Summit, New York, NY, September 29, 2022.

Bailey, S., T. Brydges, O. Casas-Monroy, J. Kydd, R. Linley, R. Rozon, AND J. Darling. First evaluation of ballast water management systems on operational ships for minimizing introductions of nonindigenous zooplankton. MARINE POLLUTION BULLETIN. Elsevier Science Ltd, New York, NY, 182:113947, (2022). https://doi.org/10.1016/j.marpolbul.2022.113947

Schaeffer, B., K. Wolfe, P. Whitman, J. Werdell, E. Urquhart, M. Tomlinson, R. Stumpf, D. Smith, B. Seegers, W. Salls, R. Parmar, M. Papenfus, S. Mishra, A. Meredith, K. Loftin, D. Keith, JohnM Johnston, J. Iiames, E. Hilborn, J. Darling, R. Conmy, M. Coffer, AND S. Bailey. Highlights of the Cyanobacteria Assessment Network: validation, application, and reverberation. Ocean Optics Conference, Binh Dinh, Quy Nhon, VIETNAM, October 02 - 07, 2022.

Pagenkopp Lohan, K., J. Darling, AND G. Ruiz. International shipping as a potent vector for spreading marine parasites. Diversity and Distributions. Blackwell Publishing Limited, Oxford, Uk, 28(9):1922-1933, (2022). https://doi.org/10.1111/ddi.13592

Smucker, N., E. Pilgrim, R. Mitchell, A. Pollard, C. Nietch, J. Darling, AND D. Carlisle. National scale patterns of diatom-environment relationships in rivers and streams of the United States based on DNA metabarcoding. 36th Congress of the International Society of Limnology 2022, Berlin, GERMANY, August 07 - 22, 2022.

Coffer, M., B. Schaeffer, K. Foreman, A. Porteous, K. Loftin, R. Stumpf, P. Werdell, E. Urquhart, R. Albert, AND J. Darling. Assessing cyanobacterial frequency and abundance at surface waters near drinking water intakes across the United States. WATER RESEARCH. Elsevier Science Ltd, New York, NY, 201:117377, (2021). https://doi.org/10.1016/j.watres.2021.117377

Smucker, N., E. Pilgrim, C. Nietch, J. Darling, H. Wu, M. Molina, AND B. Johnson. Characterizing temporal variation in diatom rbcL sequences in streams to inform nutrient indicator development using DNA metabarcoding. IDS 2021 – Online International Diatom Symposium, Virtual, JAPAN, August 23 - 25, 2021.

Bagley, M., J. Darling, E. Pilgrim, AND R. Mitchell. DNA data acceptance criteria for biological assessments: Starting the conversation. 2021 North American Lake Management Society National Monitoring Conference, Virtual, April 19 - 23, 2021.

Mitchell, R., M. Bagley, AND J. Darling. Integrating DNA-based biomonitoring into the United States National Aquatic Resource Surveys. 2021 NALMS National Monitoring Conference, Virtual, April 19 - 23, 2021.

Tobias, Z., A. Fowler, A. Blakeslee, J. Darling, M. Torchin, A. Miller, G. Ruiz, AND C. Tepolt. Invasion history shapes host transcriptomic response to a body-snatching parasite. MOLECULAR ECOLOGY. Blackwell Publishing, Malden, MA, 30(17):4321-4337, (2021). https://doi.org/10.1111/mec.16038

Coffer, M., B. Schaeffer, W. Salls, E. Urquhart, K. Loftin, R. Stumpf, P. Werdell, AND J. Darling. Satellite remote sensing to assess cyanobacterial bloom frequency across the United States at multiple spatial scales. ECOLOGICAL INDICATORS. Elsevier Science Ltd, New York, NY, 128:107822, (2021). https://doi.org/10.1016/j.ecolind.2021.107822

Morisette, J., S. Burgiel, K. Brantley, W. Daniel, J. Darling, J. Davis, T. Franklin, K. Gaddis, M. Hunter, R. Lance, T. Leskey, Y. Passamaneck, A. Piaggio, B. Rector, A. Sepulveda, M. Smith, C. Stepien, AND T. Wilcox. Strategic considerations for invasive species managers in the utilization of environmental DNA (eDNA): steps for incorporating this powerful surveillance tool. Management of Biological Invasions. Regional Euro-Asian Biological Invasions Centre, Helsinki, Finland, 12(3):747-775, (2021). https://doi.org/10.3391/mbi.2021.12.3.15

Darling, J., C. Jerde, AND A. Sepulveda. What do you mean by false positive? Environmental DNA. John Wiley & Sons, Inc., Hoboken, NJ, 3(5):879-883, (2021). https://doi.org/10.1002/edn3.194

Darling, J. Avoiding unintended consequences in environmental decision-making. Youth Champions for Peace and the Environment, NA, Virtual, July 09, 2020.

Darling, J. Bringing ecogenomic surveillance and monitoring data to end-users. International Workshop on Environmental Genomics Virtual Meeting, Virtual, June 24, 2020.

Smucker, N., E. Pilgrim, C. Nietch, J. Darling, AND B. Johnson. DNA metabarcoding effectively quantifies diatom responses to nutrients in streams. ECOLOGICAL APPLICATIONS. Ecological Society of America, Ithaca, NY, 30(8):e02205, (2020). https://doi.org/10.1002/eap.2205

Pilgrim, E., N. Smucker, J. Darling, C. Nietch, AND M. Bagley. Exploring DNA metabarcoding of diatoms and periphyton in a national survey of streams and rivers. 2020 SETAC North America Annual Meeting, Virtual, November 15 - 19, 2020.

Darling, J. How to learn to stop worrying and love environmental DNA monitoring. Aquatic Ecosystem Health and Management. Taylor & Francis, Inc., Philadelphia, PA, 22(4):440-451, (2020). https://doi.org/10.1080/14634988.2019.1682912