Grantee Research Project Results
Journal Publications Details for Grant Number R835737C005
Pathway Analysis Core
RFA:
Organotypic Culture Models for Predictive Toxicology Center (2013)
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| Reference Type | Reference Title | Journal | Author | Citation | Progress Report Year | Document Sources |
|---|---|---|---|---|---|---|
| Journal Article | Integrating transcriptomic and proteomic data using predictive regulatory network models of host response to pathogens. | PLOS COMPUTATIONAL BIOLOGY | Chasman D, Walters KB, Lopes TJ, Eisfeld AJ, Kawaoka Y, Roy S | Chasman D, Walters KB, Lopes TJ, Eisfeld AJ, Kawaoka Y, Roy S. Integrating transcriptomic and proteomic data using predictive regulatory network models of host response to pathogens. PLoS Computational Biology2016;12(7):e1005013. |
R835737 (2015) R835737 (2016) R835737 (2017) R835737C005 (2015) |
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| Journal Article | Network-based approaches for analysis of complex biological systems. | CURRENT OPINION IN BIOTECHNOLOGY | Chasman D, Fotuhi Siahpirani A, Roy S | Chasman D, Fotuhi Siahpirani A, Roy S. Network-based approaches for analysis of complex biological systems. Current Opinion in Biotechnology 2016;39:157-166. |
R835737 (2015) R835737 (2016) R835737 (2017) R835737C005 (2015) |
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| Journal Article | Inference of cell type specific regulatory networks on mammalian lineages. | CURRENT OPINION IN SYSTEMS BIOLOGY | Chasman D, Roy S | Chasman D, Roy S. Inference of cell type specific regulatory networks on mammalian lineages. Current Opinion in Systems Biology 2017;2:130-139. |
R835737 (2017) R835737C004 (2017) R835737C005 (2016) R835737C005 (2017) |
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| Journal Article | Physiological responses and gene co-expression network of mycorrhizal roots under K+ deprivation. | PLANT PHYSIOLOGY | Garcia K, Chasman D, Roy S, Ane J-M | Garcia K, Chasman D, Roy S, Ane J-M. Physiological responses and gene co-expression network of mycorrhizal roots under K+ deprivation. Plant Physiology 2017;173(3):1811-1823. |
R835737 (2017) R835737C004 (2017) R835737C005 (2017) |
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| Journal Article | Chromatin module inference on cellular trajectories identifies key transition points and poised epigenetic states in diverse developmental processes. | None | Roy S, Sridharan R | Roy S, Sridharan R. Chromatin module inference on cellular trajectories identifies key transition points and poised epigenetic states in diverse developmental processes. Genome Research 2017;27(7):1250-1262. |
R835737C004 (2017) R835737C005 (2017) |
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| Journal Article | A prior-based integrative framework for functional transcriptional regulatory network inference. | None | Siahpirani A, Roy S | Siahpirani A, Roy S. A prior-based integrative framework for functional transcriptional regulatory network inference. Nucleic Acids Research 2017;45(4):e21 (22 pp.). |
R835737C005 (2017) |
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| Journal Article | Imputed gene associations identify replicable trans-acting genes enriched in transcription pathways and complex traits | GANET EPIDIMIOL | Wheeler HE, Ploch SA, Barberia AN, Bonazzola R, Andaleon A, Fotuhi S,Saha A, Battle A, Roy S, Im HK | Wheeler HE, Ploch SA, Barberia AN, Bonazzola R, Andaleon A, Fotuhi S, Saha A, Battle A, Roy S, Im HK. Imputed gene associations identify replicable trans-acting genes enriched in transcription pathways and complex traits. Genetic Epidemiology 2019. |
R835737C005 (Final) |
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| Journal Article | Chromatin module inference on cellular trajectories identifies key transition points and poised epigenetic states in diverse developmental processes. | None | Roy S, Sridharan R | Roy S, Sridharan R. Chromatin module inference on cellular trajectories identifies key transition points and poised epigenetic states in diverse developmental processes. Genome Research 2017;27(7):1250-1262. |
R835737 (2017) R835737C005 (2016) |
The perspectives, information and conclusions conveyed in research project abstracts, progress reports, final reports, journal abstracts and journal publications convey the viewpoints of the principal investigator and may not represent the views and policies of ORD and EPA. Conclusions drawn by the principal investigators have not been reviewed by the Agency.