Journal Publications for Center:

Pacific Estuarine Ecosystem Indicator Research (PEEIR) Consortium

Grant Number R828676

Journal Article (40)
Reference Type Citation Progress Report Year Document Sources
Journal Article Anderson SL, Cherr GN, Morgan SG, Vines CA, Higashi RM, Bennett WA, Rose WL, Brooks AJ, Nisbet RM. Integrating contaminant responses in indicator saltmarsh species. Marine Environmental Research 2006;62(Suppl 1):S317-S321. R828676 (Final)
R828676C002 (Final)
Journal Article Cordova-Kreylos AL, Scow KM. Effects of ciprofloxacin on salt marsh sediment microbial communities. The ISME Journal 2007;1(7):585-595. R828676 (Final)
Journal Article Cordova-Kreylos AL, Cao Y, Green PG, Hwang H-M, Kuivila KM, LaMontagne MG, Van De Werfhorst LC, Holden PA, Scow KM. Diversity, composition, and geographical distribution of microbial communities in California salt marsh sediments. Applied and Environmental Microbiology 2006;72(5):3357-3366. R828676 (Final)
R828676C003 (Final)
Journal Article Fan TW-M, Lane AN, Chekmenev E, Wittebort RJ, Higashi RM. Synthesis and physico-chemical properties of peptides in soil humic substances. Journal of Peptide Research 2004;63(3):253-264. R828676 (Final)
R828676C003 (2003)
Journal Article Fan TW-M, Lane AN, Higashi RM. An electrophoretic profiling method for thiol-rich phytochelatins and metallothioneins. Phytochemical Analysis 2004;15(3):175-183. R825960 (Final)
R828676 (Final)
R828676C003 (2003)
Journal Article Field KG, Chern EC, Dick LK, Fuhrman J, Griffith J, Holden PA, LaMontagne MG, Le J, Olson B, Simonich MT. A comparative study of culture-independent, library-independent genotypic methods of fecal source tracking. Journal of Water and Health 2003;1(4):181-194. R827639 (Final)
R828676 (Final)
R828676C003 (Final)
Journal Article Fleming EJ, Mack EE, Green PG, Nelson DC. Mercury methylation from unexpected sources: molybdate-inhibited freshwater sediments and an iron-reducing bacterium. Applied and Environmental Microbiology 2006;72(1):457-464. R828676C003 (2004)
R829388 (Final)
R829388C001 (2005)
Journal Article Fujiwara M, Kendall BE, Nisbet RM. Growth autocorrelation and animal size variation. Ecology Letters 2004;7(2):106-113. R828676 (2003)
R828676 (2004)
R828676 (Final)
Journal Article Fujiwara M, Kendall BE, Nisbet RM, Bennett WA. Analysis of size trajectory data using an energetic-based growth model. Ecology 2005;86(6):1441-1451. R828676 (Final)
R828676C001 (2004)
Journal Article Gurney WSC, Nisbet RM. Resource allocation, hyperphagia and compensatory growth. Bulletin of Mathematical Biology 2004;66(6):1731-1753. R828676 (2004)
R828676 (Final)
Journal Article Gurney WSC, Jones W, Veitch AR, Nisbet RM. Resource allocation, hyperphagia, and compensatory growth in juveniles. Ecology 2003;84(10):2777-2787. R828676 (Final)
Journal Article Hechinger RF, Lafferty KD. Host diversity begets parasite diversity: bird final hosts and trematodes in snail intermediate hosts. Proceedings of the Royal Society B–Biological Sciences 2005;272(1567):1059-1066. R828676 (Final)
R828676C001 (2004)
R828676C003 (Final)
Journal Article Huspeni TC, Lafferty KD. Using larval trematodes that parasitize snails to evaluate a saltmarsh restoration project. Ecological Applications 2004;14(3):795-804. R828676 (Final)
R828676C001 (2002)
R828676C003 (Final)
Journal Article Hwang H-M, Green PG, Young TM. Tidal salt marsh sediment in California, USA. Part 1: Occurrence and sources of organic contaminants. Chemosphere 2006;64(8):1383-1392. R828676 (Final)
Journal Article Hwang H-M, Green PG, Higashi RM, Young TM. Tidal salt marsh sediment in California, USA. Part 2:occurrence and anthropogenic input of trace metals. Chemosphere 2006;64(11):1899-1909. R828676 (Final)
Journal Article Hwang H-M, Green PG, Young TM. Historical trends of trace metals in a sediment core from a contaminated tidal salt marsh in San Francisco Bay. Environmental Geochemistry and Health 2009;31(4):421-430. R828676 (Final)
Journal Article Hwang H-M, Green PG, Young TM. Tidal salt marsh sediment in California, USA: Part 3. Current and historic toxicity potential of contaminants and their bioaccumulation. Chemosphere 2008;71(11):2139-2149. R828676 (Final)
Journal Article Lafferty KD. Is disease increasing or decreasing, and does it impact or maintain biodiversity? Journal of Parasitology 2003;89(Suppl):S101-S105. R828676 (Final)
R828676C001 (2002)
Journal Article Lafferty KD, Holt RD. How should environmental stress affect the population dynamics of disease? Ecology Letters 2003;6(7):654-664. R828676 (Final)
R828676C001 (2002)
Journal Article Lafferty KD, Porter JW, Ford SE. Are diseases increasing in the ocean? Annual Review of Ecology, Evolution, and Systematics 2004;35:31-54. R828676C001 (Final)
Journal Article Lafferty KD, Hechinger RF, Lorda J, Soler L. Trematodes associated with mangrove habitat in Puerto Rican salt marshes. Journal of Parasitology 2005;91(3):697-699. R828676C001 (2004)
Journal Article Lafferty KD, Dunham EJ. Trematodes in snails near raccoon latrines suggest a final host role for this mammal in California Salt Marshes. Journal of Parasitology 2005;91(2):474-476. R828676C001 (2004)
not available
Journal Article LaMontagne MG, Astorga V, Giblin AE, Valiela I. Denitrification and the stoichiometry of nutrient regeneration in Waquoit Bay, Massachusetts. Estuaries and Coasts 2002;25(2):272-281. R828676 (Final)
Journal Article LaMontagne MG, Holden PA. Comparison of free-living and particle-associated bacterial communities in a coastal lagoon. Microbial Ecology 2003;46(2):228-237. R828676 (Final)
R828676C003 (2003)
R828676C003 (Final)
Journal Article LaMontagne MG, Leifer I, Bergmann S, Van De Werfhorst LC, Holden PA. Bacterial diversity in marine hydrocarbon seep sediments. Environmental Microbiology 2004;6(8):799-808. R828676 (Final)
R828676C003 (2003)
R828676C003 (Final)
Journal Article Li L, Ustin SL, Lay M. Application of multiple endmember spectral mixture analysis (MESMA) to AVIRIS imagery for coastal salt marsh mapping: a case study in China Camp, CA, USA. International Journal of Remote Sensing 2005;26(23):5193-5207. R828676 (Final)
R828676C003 (Final)
Journal Article Magalhaes C, Bano N, Wiebe WJ, Hollibaugh JT, et al. Comparison of ammonium oxidizing bacterial phylotypes and function between biofilms and sediments of the Douro River Estuary, Portugal. Environmental Microbiology (in review, 2005). R828676C001 (2004)
not available
Journal Article Magalhaes C, Bano N, Wiebe WJ, Bordalo AA, Hollibaugh JT. Dynamics of nitrous oxide reductase genes (nosZ) in intertidal rocky biofilms and sediments of the Douro River Estuary (Portugal), and their relation to N-biogeochemistry. Microbial Ecology 2008;55(2):259-269. R828676 (Final)
Journal Article McGourty CR, Hobbs JA, Bennett WA, Green PG, Hwang H-M, Ikemiyagi N, Lewis L, Cope JM. Likely population-level effects of contaminants on a resident estuarine fish species: comparing Gillichthys mirabilis population static measurements and vital rates in San Francisco and Tomales Bays. Estuaries and Coasts 2009;32(6):1111-1120. R828676 (Final)
Journal Article Morgan SG, Spilseth SA, Page HM, Brooks AJ, Grosholz ED. Spatial and temporal movement of the lined shore crab Pachygrapsus crassipes in salt marshes and its utility as an indicator of habitat condition. Marine Ecology Progress Series 2006;314:271-281. R828676 (Final)
R828676C001 (Final)
Journal Article Nisbet RM, McCauley E, Gurney WSC, Murdoch WW, Wood SN. Formulating and testing a partially specified dynamic energy budget model. Ecology 2004;85(11):3132-3139. R828676 (Final)
Journal Article Pillai MC, Vines CA, Wikramanayake AH, Cherr GN. Polycyclic aromatic hydrocarbons disrupt axial development in sea urchin embryos through a β-catenin dependent pathway. Toxicology 2003;186(1-2):93-108. R828676C002 (2003)
Journal Article Rose WL, Hobbs JA, Nisbet RM, Green PG, Cherr GN, Anderson SL. Validation of otolith growth rate analysis using cadmium-exposed larval topsmelt (Atherinops affinis). Environmental Toxicology & Chemistry 2005;24(10):2612-2620. R828676 (Final)
R828676C002 (2004)
Journal Article Rosso PH, Ustin SL, Hastings A. Mapping marshland vegetation of San Francisco Bay, California, using hyperspectral data. International Journal of Remote Sensing 2005;26(23):5169-5191. R828676 (Final)
R828676C003 (Final)
Journal Article Rosso PH, Pushnick JC, Lay M, Ustin SL. Reflectance properties and physiological responses of Salicornia virginica to heavy metal and petroleum contamination. Environmental Pollution 2005;137(2):241-252. R828676 (Final)
Journal Article Rosso PH, Ustin SL, Hastings A. Use of lidar to study changes associated with Spartina invasion in San Francisco Bay marshes. Remote Sensing of Environment 2006;100(3):295-306. R828676 (Final)
R828676C003 (Final)
Journal Article Shaw JC, Aguirre-Macedo L, Lafferty KD. An efficient strategy to estimate intensity and prevalence: sampling metacercariae in fishes. Journal of Parasitology 2005;91(3):515-521. R828676C001 (2004)
Journal Article Spilseth SA, Morgan SG. Evaluation of internal elastomer tags for small, mature crabs. Crustaceana 2005;78(11):1383-1388. R825689C028 (Final)
R828676 (Final)
R828676C001 (2004)
R828676C001 (Final)
Journal Article Steets BM, Holden PA. A mechanistic model of runoff-associated fecal coliform fate and transport through a coastal lagoon. Water Research 2003;37(3):589-608. R828676 (Final)
R828676C003 (2002)
R828676C003 (Final)
Journal Article Ward JR, Lafferty KD. The elusive baseline of marine disease: are diseases in ocean ecosystems increasing? PLoS Biology 2004;2(4):542-547. R828676C001 (2003)
not available