Science Inventory

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Barham, K., R. Spencer, Nancy C. Baker, AND T. Knudsen. Engineering a Computable Epiblast for in silico Modeling of Developmental Toxicity (SOT 24). Society of Toxicology (SOT) 63rd Annual Meeting and ToxExpo, Salt Lake CIty, UT, March 10 - 14, 2024. https://doi.org/10.23645/epacomptox.25488040

Williams, A., G. Janesch, S. Sivasupramaniam, T. Carr, AND N. Baker. Using Cheminformatics Approaches to Develop a Structure Searchable Database of Analytical Methods (P&G). Proctor and Gamble, Cincinnati, OH, March 07, 2024. https://doi.org/10.23645/epacomptox.25447090

Williams, A., G. Janesch, S. Sivasupramaniam, N. Baker, AND E. Carr. Applying Cheminformatics to Develop a Structure Searchable Database of Analytical Methods (HESI 2023). HESI, Orlando, FL, November 30, 2023.

Sakamuru, S., D. Ma, J. Pierro, N. Baker, N. Kleinstreuer, J. Cali, T. Knudsen, AND M. Xia. Development and Validation of Enzyme-based CYP26A1 Inhibition Assay in a High-Throughput Screening Platform. Society of Toxicology 62nd Annual Meeting and ToxExpo 2023, Nashville, TN, March 19 - 23, 2023. https://doi.org/10.23645/epacomptox.22700743

Knudsen, T., K. Barham, Nancy C. Baker, K. Carstens, AND R. Spencer. Engineering a Computable Epiblast for in silico Modeling of Developmental Toxicity. 12th World Congress on Alternatives and Animal Use in the Life Sciences, Niagra, Ontario, CANADA, August 27 - 31, 2023. https://doi.org/10.23645/epacomptox.24291223

Barham, K., R. Spencer, Nancy C. Baker, K. Carstens, AND T. Knudsen. Engineering a Computable Model for Microglial-dependent Neurodevelopment. International Neurotoxicology Association, Durham, NC, May 21 - 25, 2023. https://doi.org/10.23645/epacomptox.23271890

Baker, N., J. Pierro, L. Taylor, AND T. Knudsen. Identifying candidate reference chemicals for in vitro testing of the retinoid pathway for predictive developmental toxicity. ALTEX. Society ALTEX Edition, Kuesnacht, Switzerland, 40(2):217-236, (2023). https://doi.org/10.14573/altex.2202231

Naphade, O., K. Barham, R. Spencer, Nancy C. Baker, T. Zurlinden, K. Saili, K. Carstens, A. Silvin, F. Ginhoux, AND T. Knudsen. Microglial Dynamics, Blood-Brain Barrier Morphogenesis, and Developmental Toxicity: a brief review and computational model. Current Opinion in Toxicology. Elsevier BV, AMSTERDAM, Netherlands, 36:100419, (2023). https://doi.org/10.1016/j.cotox.2023.100419

Chambers, B., D. Basili, L. Taylor, N. Baker, A. Middleton, R. Judson, AND I. Shah. Searching for LINCS to Stress: using text-mining to automate reference chemical curation. Society of Toxicology 62nd Annual Meeting and ToxExpo 2023, Nashville, TN, March 19 - 23, 2023. https://doi.org/10.23645/epacomptox.22731980

Williams, A., G. Janesch, E. Carr, S. Sivasupramaniam, B. Meyer, AND Nancy C. Baker. Using cheminformatics approaches to develop a structure searchable database of analytical methods (ACS 2023). ACS, San Francisco, CA, August 13 - 17, 2023. https://doi.org/10.23645/epacomptox.23960901

Ponder, J., R. Rajagopal, S. Cochrane, M. Singal, N. Baker, G. Patlewicz, E. Roggen, AND K. Sullivan. Weight-of-Evidence Analysis for the Development of a Reference List of Chemical Respiratory Sensitizers. SOT, Nashville, TN, March 19 - 23, 2023. https://doi.org/10.23645/epacomptox.22630639

Ponder, J., R. Rajagopal, M. Singal, N. Baker, G. Patlewicz, E. Roggen, S. Cochrane, AND K. Sullivan. "In Litero” Screening: Retrospective Evaluation of Clinical Evidence to Establish a Reference List of Human Chemical Respiratory Sensitizers. Frontiers in Toxicology. Frontiers, Lausanne, Switzerland, 4:916370, (2022). https://doi.org/10.3389/ftox.2022.916370

Adkins, N., N. Baker, AND C. Elonen. AbstractSifter v7. U.S. Environmental Protection Agency, Washington, DC, 2022. https://doi.org/10.23645/epacomptox.5588635

Martin, M., Nancy C. Baker, W. Boyes, K. Carstens, M. Culbreth, Mary E. Gilbert, J. Harrill, J. Nyffeler, S. Padilla, K. Paul-Friedman, AND T. Shafer. An expert-driven literature review of “negative” reference chemicals for developmental neurotoxicity (DNT) in vitro assay evaluation. NEUROTOXICOLOGY AND TERATOLOGY. Elsevier Science Ltd, New York, NY, 93:107117, (2022). https://doi.org/10.1016/j.ntt.2022.107117

Keshava, C., S. Nicolai, Suryanarayana Vulimiri, F. Cruz, N. Ghoreishi, S. Knueppel, A. Lenzner, P. Tarnow, J. Vanselow, B. Schulz, A. Persad, N. Baker, K. Thayer, A. Williams, AND P. Pirow. Application of systematic evidence mapping to identify the potential human health hazards of azo dyes. International Conference on Environmental Mutagens, August 27th- September 1st, 2022, Ottawa, Ontario, CANADA, August 27 - September 01, 2022.

Pierro, J., B. Ahir, Nancy C. Baker, N. Kleinsteuer, M. Xia, AND T. Knudsen. Computational model for fetal skeletal defects potentially linked to disruption of retinoic acid signaling. Frontiers in Pharmacology. Frontiers, Lausanne, Switzerland, 13:971296, (2022). https://doi.org/10.3389/fphar.2022.971296

Bevington, C., A. Williams, C. Guider, N. Baker, B. Meyer, M. Babich, S. Robinson, A. Jones, AND K. Phillips. Development of a Flame Retardant and an Organohalogen Flame Retardant Chemical Inventory. Scientific Data. Springer Nature, New York, NY, 9:295, (2022). https://doi.org/10.1038/s41597-022-01351-0

Pierro, J., B. Ahir, N. Baker, AND T. Knudsen. Identification of Chemicals Associated with Retinoid Signaling Pathway Disturbance and Skeletal Dysmorphogenesis Through Predictive Computational Toxicology Models. Society of Toxicology (FutureTox V), Chapel Hill, NC, May 10 - 11, 2022. https://doi.org/10.23645/epacomptox.19692319

Baker, Nancy C. AND T. Knudsen. Identification of candidate reference chemicals using multidimensional literature and database mining with EPA’s PubMed Abstract Sifter. American Society for Cellular and Computational Toxicology (ASCCT), Chapel Hill, NC, October 19 - 21, 2022. https://doi.org/10.23645/epacomptox.21950867

Baker, Nancy C., J. Pierro, L. Taylor, AND T. Knudsen. Identifying candidate reference chemicals for in vitro testing of the retinoid pathway from public data and literature mining. Society of Toxicology 61st Annual Meeting and ToxExpo 2022, San Diego, California, March 27 - 31, 2022. https://doi.org/10.23645/epacomptox.19576558

Knapp, B., R. Judson, L. Taylor, Nancy C. Baker, B. Chambers, AND S. Padilla. Investigating Specific Mechanisms of Toxicity Using Zebrafish Developmental Assays and In Vitro High-Throughput Transcriptomics Analysis. Carolina Society of Environmental Toxicology and Chemistry (CSETAC) 2022 Annual Meeting, RTP (may be virtual), NC, April 06 - 08, 2022. https://doi.org/10.23645/epacomptox.19583917

Chambers, B., L. Taylor, N. Baker, R. Judson, AND I. Shah. Literature-mining and Transcriptomic Stress Response Annotation of a Large Chemical Database. Society of Toxicology 61st Annual Meeting and ToxExpo 2022, San Diego, CA, March 27 - 31, 2022. https://doi.org/10.23645/epacomptox.20387103

Piersma, A., Nancy C. Baker, G. Daston, B. Flick, M. Fujiwara, T. Knudsen, H. Spielmann, N. Suzuki, K. Tsaioun, AND H. Kojima. Pluripotent Stem Cell Assays: Modalities and Applications for Predictive Developmental Toxicity. Current Research in Toxicology. Elsevier B.V., Amsterdam, Netherlands, 3:100074, (2022). https://doi.org/10.1016/j.crtox.2022.100074

Baker, N. PubMed Abstract Sifter: a literature informatics tool for chemical research. Fall ACS, Chicago, IL, August 21 - 25, 2022. https://doi.org/10.23645/epacomptox.20490168

Baker, N. PubMed abstract sifter: an API-driven literature mining tool for biomedical and biochemical research. Fall ACS, Chicago, IL, August 21 - 25, 2022. https://doi.org/10.23645/epacomptox.20481642