Science Inventory

Next >>

Ankley, G., J. Berninger, E. Maloney, J. Olker, C. Schaupp, Dan Villeneuve, AND C. LaLone. Linking Mechanistic Effects of Pharmaceuticals and Personal Care Products to Ecologically Relevant Outcomes: A Decade of Progress. ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY. Society of Environmental Toxicology and Chemistry, Pensacola, FL, 43(3):537-548, (2024). https://doi.org/10.1002/etc.5416

Brooks, B., S. van den Berg, D. Dreier, C. LaLone, S. Owen, S. Raimondo, AND X. Zhang. Towards Precision Ecotoxicology: Leveraging Evolutionary Conservation of Pharmaceutical and Personal Care Product Targets to Understand Adverse Outcomes Across Species and Life Stages. ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY. Society of Environmental Toxicology and Chemistry, Pensacola, FL, 43(3):526-536, (2024). https://doi.org/10.1002/etc.5754

Villeneuve, D., B. Meek, B. Viviani, T. Burgdorf, C. LaLone, J. O'Brien, D. Knapen, M. Angrish, R. Fitzgerald, AND S. Tanabe. AOP Developer’s Handbook Version 2.6. U.S. Environmental Protection Agency, Washington, DC, 2023.

Lalone, C. Bioinformatics in Ecotoxicology. University of Florida Chemometrics Lecture, NA, FL, April 04, 2023. https://doi.org/10.23645/epacomptox.24749496

Lalone, C., M. Jensen, S. Mayasich, M. Botz, P. Schumann, K. Mattingly, W. Melendez, A. Wilkinson, AND C. Simmons. Combination of Bioinformatics Approaches for Expanding the Biologically Plausible Taxonomic Domain of Applicability for Adverse Outcome Pathways. SOT, Nashville, TN, March 19 - 23, 2023. https://doi.org/10.23645/epacomptox.24299149

Schumann, P., C. Rivetti, J. Houghton, M. Blanco-Rubio, B. Campos, G. Hodges, AND C. Lalone. Combination of Computational New Approach Methods for Enhancing Evidence of Biological Pathway Conservation Across Species. SETAC, Dublin, IRELAND, April 30 - May 04, 2023. https://doi.org/10.23645/epacomptox.22589047

Schumann, P., C. Rivetti, J. Houghton, B. Campos, G. Hodges, AND C. LaLone. Combination of computational new approach methodologies for enhancing evidence of biological pathway conservation across species. SCIENCE OF THE TOTAL ENVIRONMENT. Elsevier BV, AMSTERDAM, Netherlands, 912:168573, (2024). https://doi.org/10.1016/j.scitotenv.2023.168573

Mayasich, S., M. Goldsmith, K. Mattingly, AND C. Lalone. Combining In Vitro and In Silico New Approach Methods to Investigate Type 3 Iodothyronine Deiodinase Chemical Inhibition Across Species. ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY. Society of Environmental Toxicology and Chemistry, Pensacola, FL, 42(5):1032-1048, (2023). https://doi.org/10.1002/etc.5591

Haigis, A., L. Vergauwen, C. LaLone, D. Villeneuve, J. O'Brien, AND D. Knapen. Cross-species applicability of an adverse outcome pathway network for thyroid hormone system disruption. TOXICOLOGICAL SCIENCES. Society of Toxicology, RESTON, VA, 195(1):1-27, (2023). https://doi.org/10.1093/toxsci/kfad063

Vliet, S., M. Hazemi, D. Blatz, M. Jensen, S. Mayasich, T. Transue, C. Simmons, A. Wilkinson, AND C. Lalone. Demonstration of the Sequence Alignment to Predict Across Species Susceptibility Tool for Rapid Assessment of Protein Conservation. Journal of Visualized Experiments . JoVE, Somerville, MA, , 192, (2023). https://doi.org/10.3791/63970

Maloney, E., D. Villeneuve, K. Jensen, B. Blackwell, M. Kahl, S. Poole, K. Vitense, D. Feifarek, G. Patlewicz, Kenneth Dean, C. Tilton, E. Randolph, J. Cavallin, C. Lalone, D. Blatz, C. Schaupp, AND G. Ankley. Evaluation of Complex Mixture Toxicity in the Milwaukee Estuary (WI, USA) Using Whole-Mixture and Component-Based Evaluation Methods. ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY. Society of Environmental Toxicology and Chemistry, Pensacola, FL, 42(6):1229-1256, (2023). https://doi.org/10.1002/etc.5571

Lalone, C., M. Botz, P. Schumann, W. Melendez, A. Wilkinson, AND C. Simmons. Expanding SeqAPASS Capabilities to Protein Structural Comparisons Across Species. SETAC, Dublin, IRELAND, April 30 - May 04, 2023. https://doi.org/10.23645/epacomptox.22587898

Lalone, C., D. Blatz, M. Jensen, S. Vliet, S. Mayasich, K. Mattingly, T. Transue, W. Melendez, A. Wilkinson, C. Simmons, C. Ng, C. Zhang, AND Y. Zhang. From Protein Sequence to Structure: The Next Frontier in Cross-Species Extrapolation for Chemical Safety Evaluations. ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY. Society of Environmental Toxicology and Chemistry, Pensacola, FL, 42(2):463-474, (2023). https://doi.org/10.1002/etc.5537

Vliet, S., J. Cavallin, S. Mayasich, AND C. Lalone. Integrating In Silico And In Vitro Approaches to Understand Cross-Species Predictions of Chemical Susceptibility for Aromatase. SOT, Nashville, TN, March 19 - 23, 2023. https://doi.org/10.23645/epacomptox.22277455

Mitchell, C., N. Burden, M. Bonnell, M. Hecker, T. Hutchinson, M. Jagla, C. LaLone, L. Lagadic, S. Lynn, B. Shore, Y. Song, S. Vliet, J. Wheeler, AND M. Embry. New Approach Methodologies for the Endocrine Activity Toolbox: Environmental Assessment for Fish and Amphibians. ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY. Society of Environmental Toxicology and Chemistry, Pensacola, FL, 42(4):757-777, (2023). https://doi.org/10.1002/etc.5584

Morshead, M., K. Jensen, G. Ankley, S. Vliet, C. LaLone, D. Villeneuve, A. Vidales Aller, AND K. Watanabe. Putative adverse outcome pathway development based on physiological responses of female fathead minnows to model estrogen versus androgen receptor agonists. AQUATIC TOXICOLOGY. Elsevier Science Ltd, New York, NY, 261:106607, (2023). https://doi.org/10.1016/j.aquatox.2023.106607

Sewell, F. AND C. LaLone. Reducing reliance on animals through use of in silico approaches for decision-making. World Congress on Alternatives and Animal Use in the Life Sciences, Niagara Falls, N/A, CANADA, August 27 - 31, 2023.

Lalone, C. SeqAPASS as a prioritization tool, applied to pharmaceuticals and their environmental safety. Ghent University, Virtual, NC, March 10, 2023. https://doi.org/10.23645/epacomptox.24602322

Vliet, S., K. Markey, S. Lynn, A. Adetona, D. Fallacara, P. Ceger, N. Choski, A. Karmaus, A. Watson, A. Ewans, A. Daniel, J. Hamm, K. Vitense, K. Wolf, A. Thomas, AND C. Lalone. Weight of evidence for cross-species conservation of androgen receptor-based biological activity. TOXICOLOGICAL SCIENCES. Society of Toxicology, RESTON, VA, 193(2):131-145, (2023). https://doi.org/10.1093/toxsci/kfad038

LaLone, C. A vision for the role of bioinformatics, specifically SeqAPASS, in species extrapolation for chemical safety. Bayer AG - Internal global aquatic network meeting, Duluth, MN, March 01, 2022. https://doi.org/10.23645/epacomptox.19375487

Villeneuve, D., B. Meek, B. Viviani, T. Burgdorf, C. Lalone, J. O'Brien, D. Knapen, M. Angrish, R. Fitzgerald, AND S. Tanabe. AOP Developer's Handbook 2.5: Supplement to the Guidance Document for Developing and Assessing AOPs. U.S. Environmental Protection Agency, Washington, DC, 2022.

Olker, J. AND C. Lalone. Adding Standard Identifiers to ECOTOX (Chemicals, Species) and Linking to CompTox Chemicals Dashboard. U.S. Environmental Protection Agency, Washington, DC, 2022.

Vliet, S., K. Markey, S. Lynn, K. Vitense, AND C. LaLone. Advanced Systematic Review for Understanding Cross-Species Conservation of Androgen Receptor-Based Chemical Toxicity. Society of Toxicology, San Diego, CA, March 27 - 31, 2022. https://doi.org/10.23645/epacomptox.19699522

Hazemi, M., Dan Villeneuve, A. Latier, M. Jankowski, C. LaLone, C. Schaupp, M. Chan, D. Haggard, AND K. Mattingly. Advancing Endangered Species Act consultations – Use of an Automated, Computational Pipeline to Extract Points of Departure from Public Data Sources. SETAC North America, Pittsburgh, PA, November 13 - 17, 2022. https://doi.org/10.23645/epacomptox.21559146

LaLone, C. Bioinformatics is for Everyone: Sequence Alignment to Predict Across Species Susceptibility. OECD Working Party of the National Coordinators of the Test Guidelines Programme (WNT), NA, MN, July 06, 2022. https://doi.org/10.23645/epacomptox.20493087