Science Inventory

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Chambers, B., L. Taylor, N. Baker, R. Judson, AND I. Shah. Literature-mining and Transcriptomic Stress Response Annotation of a Large Chemical Database. Society of Toxicology 61st Annual Meeting and ToxExpo 2022, San Diego, CA, March 27 - 31, 2022. https://doi.org/10.23645/epacomptox.20387103

Piersma, A., Nancy C. Baker, G. Daston, B. Flick, M. Fujiwara, T. Knudsen, H. Spielmann, N. Suzuki, K. Tsaioun, AND H. Kojima. Pluripotent Stem Cell Assays: Modalities and Applications for Predictive Developmental Toxicity. Current Research in Toxicology. Elsevier B.V., Amsterdam, Netherlands, 3:100074, (2022). https://doi.org/10.1016/j.crtox.2022.100074

Baker, N. PubMed Abstract Sifter: a literature informatics tool for chemical research. Fall ACS, Chicago, IL, August 21 - 25, 2022. https://doi.org/10.23645/epacomptox.20490168

Baker, N. PubMed abstract sifter: an API-driven literature mining tool for biomedical and biochemical research. Fall ACS, Chicago, IL, August 21 - 25, 2022. https://doi.org/10.23645/epacomptox.20481642

Taylor, L., B. Chambers, N. Baker, J. Harrill, L. Everett, I. Shah, AND R. Judson. Refining reference chemicals and signatures of activity using high throughput transcriptomics for advancing predictive toxicology. Society of Toxicology 61st Annual Meeting and ToxExpo 2022, San Diego, California, March 27 - 31, 2022. https://doi.org/10.23645/epacomptox.19539355

Taha, H., R. Aalizadeh, N. Aygizakis, J. Antignac, H. Arp, R. Bade, Nancy C. Baker, L. Belova, L. Bijlsma, E. Bolton, W. Brack, A. Celma, W. Chen, T. Cheng, P. Chirsir, L. Cirka, L. D'Agostino, Y. Djoumbou-Feunang, V. Dulio, S. Fischer, P. Gago-Ferrero, A. Galani, B. Geueke, N. Glowacka, J. Gluge, K. Groh, S. Grosse, P. Haglund, P. Hakkinen, S. Hale, F. Hernandez, E. Janssen, T. Jonkers, K. Kiefer, M. Kirchner, J. Koschorreck, M. Krauss, J. Krier, M. Lamoree, M. Letzel, T. Letzel, Q. Li, J. Little, Y. Liu, D. Lunderberg, J. Martin, A. McEachran, J. McLean, C. Meier, J. Meijer, F. Menger, C. Merino, J. Muncke, M. Muschket, AND M. Neumann. The NORMAN Suspect List Exchange (NORMAN-SLE): facilitating European and worldwide collaboration on suspect screening in high resolution mass spectrometry. Environmental Sciences Europe. Springer Nature, New York, NY, 34:104, (2022). https://doi.org/10.1186/s12302-022-00680-6

Baker, Nancy C. AND T. Knudsen. Using the PubMed Abstract Sifter for Computational Modeling of Complex Biological Processes. Interagency Modeling and Analysis Group (IMAG) webinar, NA (virtual), NC, August 11, 2022. https://doi.org/10.23645/epacomptox.21758597

Ponder, J., R. Rajagopal, M. Singal, N. Baker, S. Cochrane, G. Patlewicz, AND K. Sullivan. “In Litero” Screening: Retrospective Evaluation of Clinical Evidence to Establish a Reference List of Chemical Respiratory Sensitizers. Frontiers - Women in Regulatory Toxicology, N/A, N/A, December 01, 2021.

Pierro, J., Nancy C. Baker, A. Richard, N. Kleinstreuer, AND T. Knudsen. A Data-driven Model Analysis of Retinoid Signaling in Skeletal Dysmorphogenesis and Potential Adverse Outcome Pathways. Society for Birth Defects Research and Prevention 61st Annual Meeting, Virtual, NC, June 24 - July 01, 2021. https://doi.org/10.23645/epacomptox.14893212

Baker, Nancy C. AND T. Knudsen. Abstract Sifter: A literature informatics tool for computational toxicology. QSAR 2021 International Workshop on QSAR in Environmental and Health Sciences, Virtual, NC, June 07 - 10, 2021. https://doi.org/10.23645/epacomptox.15074148

Baker, Nancy C. AND N. Adkins. Abstract Sifter: A literature informatics tool for computational toxicology (ACS Fall 2021). American Chemical Society (ACS) Fall 2021 National Meeting, Virtual, NC, August 22 - 26, 2021. https://doi.org/10.23645/epacomptox.21401598

Baker, Nancy C. Abstract Sifter: A literature informatics tool for computational toxicology (ASCCT 2021). 10th Annual Meeting of the American Society for Cellular and Computational Toxicology (ASCCT), Virtual, Virtual, October 12 - 14, 2021. https://doi.org/10.23645/epacomptox.17704358

Pierro, J., Nancy C. Baker, AND T. Knudsen. Adverse Outcome Pathways and Computational Toxicology Applications of a Multi-database Review of Retinoid Signaling in Skeletal Development. Society of Toxicology 2021 Virtual Annual Meeting, Virtual, NC, March 12 - 26, 2021. https://doi.org/10.23645/epacomptox.14466411

Martin, M., Nancy C. Baker, W. Boyes, K. Carstens, M. Culbreth, M. Gilbert, J. Harrill, J. Nyffeler, S. Padilla, K. Paul-Friedman, AND T. Shafer. An expert-driven literature review of “negative” reference chemicals for developmental neurotoxicity (DNT) assay evaluation. Society of Toxicology 2021 Virtual Annual Meeting, Virtual, North Carolina, March 12 - 26, 2021. https://doi.org/10.23645/epacomptox.14226326

Heusinkveld, H., Y. Staal, N. Baker, G. Daston, T. Knudsen, AND A. Piersma. An ontology for developmental processes and toxicities of neural tube closure. REPRODUCTIVE TOXICOLOGY. Elsevier Science Ltd, New York, NY, 99:160-167, (2021). https://doi.org/10.1016/j.reprotox.2020.09.002

Guider, C., C. Bevington, A. Williams, Nancy C. Baker, B. Meyer, M. Babich, AND K. Phillips. Collection, Curation, and Quantitative Structure-Use Relationship (QSUR) Modeling of Flame Retardants and Organohalogenated Flame Retardants for Class-based Assessments (ISES 2021). International Society for Exposure Science 2021 Annual Meeting, NA (Virtual), NC, August 30 - September 02, 2021. https://doi.org/10.23645/epacomptox.19005401

Sullivan, K., G. Patlewicz, AND Nancy C. Baker. Development of a Reference List of Chemical Respiratory Sensitizers to Facilitate Evaluation of Integrated Approaches to Testing and Assessment. Society of Toxicology Virtual Annual Meeting 2021, Virtual, NC, March 12 - 26, 2021. https://doi.org/10.23645/epacomptox.14292066

Franzosa, J., J. Bonzo, J. Jack, Nancy C. Baker, P. Kothiya, R. Witek, P. Hurban, S. Siferd, S. Hester, I. Shah, S. Ferguson, K. Houck, AND J. Wambaugh. High-throughput toxicogenomic screening of chemicals in the environment using metabolically competent hepatic cell cultures. npj Systems Biology and Applications. Springer Nature, New York, NY, 7:Article 7, (2021). https://doi.org/10.1038/s41540-020-00166-2

Baker, N. AND T. Knudsen. Literature Mining Tool for Detailed Review Paper on the Retinoid System. In Proceedings, OECD Retinoid Project workshop, Brussels, BELGIUM, February 14 - 15, 2017. OECD Press, Paris, France, 1-240, (2021). https://doi.org/10.23645/epacomptox.5588635

Pierro, J., N. Baker, B. Ahir, AND T. Knudsen. New Approach Methods’ Model Analysis and Adverse Outcome Pathway Development Validating Retinoid Signaling Associated with Skeletal Dysmorphogenesis. 10th Annual Meeting of the American Society for Cellular and Computational Toxicology (ASCCT), Research Triangle Park, NC, October 12 - 14, 2021. https://doi.org/10.23645/epacomptox.16811035

Ponder, J., M. Singal, K. Sullivan, AND Nancy C. Baker. Retrospective Clinical Evaluation for the Development of Reference Chemical Lists. 10th Annual Meeting of the American Society for Cellular and Computational Toxicology (ASCCT), Virtual, Virtual, October 12 - 14, 2021. https://doi.org/10.23645/epacomptox.17704352

Zurlinden, T., K. Saili, N. Baker, T. Toimela, T. Heinonen, AND T. Knudsen. A cross-platform approach to characterize and screen potential neurovascular unit toxicants. REPRODUCTIVE TOXICOLOGY. Elsevier Science Ltd, New York, NY, 96(September 2020):300-315, (2020). https://doi.org/10.1016/j.reprotox.2020.06.010

Martin, M., Nancy C. Baker, W. Boyes, K. Carstens, M. Culbreth, Mary E. Gilbert, J. Harrill, J. Nyffeler, S. Padilla, K. Paul-Friedman, AND T. Shafer. A systematic literature review for the determination of “negative” chemical compounds for developmental neurotoxicity (DNT) assay evaluation. Summer School on Innovative Approaches in Science (Online), RTP, North Carolina, June 22 - 25, 2020. https://doi.org/10.23645/epacomptox.12933248

Baker, Nancy C. Abstract Sifter – Innovative PubMed search and retrieval for chemical information. American Society for Cellular and Computational Toxicology (ASCCT) annual meeting Special Training Session NURA, RTP, NC, October 23, 2020. https://doi.org/10.23645/epacomptox.13103573

Baker, Nancy C. AND T. Knudsen. Abstract Sifter: A literature informatics tool for chemical safety assessments (ASCCT 2020). American Society for Cellular and Computational Toxicology (ASCCT) Annual Meeting, NA (Virtual), NC, October 19 - 21, 2020. https://doi.org/10.23645/epacomptox.17118737