Science Inventory

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Eccles, K., A. Karmaus, N. Kleinstreuer, F. Parham, C. Rider, J. Wambaugh, AND K. Messier. A geospatial modeling approach to quantifying the risk of exposure to environmental chemical mixtures via a common molecular target. SCIENCE OF THE TOTAL ENVIRONMENT. Elsevier BV, AMSTERDAM, Netherlands, 855:158905, (2022). https://doi.org/10.1016/j.scitotenv.2022.158905

Shankar, P. AND D. Villeneuve. AOP Report: Aryl Hydrocarbon Receptor Activation Leads to Early–Life Stage Mortality via Sox9 Repression-Induced Craniofacial and Cardiac Malformations. ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY. Society of Environmental Toxicology and Chemistry, Pensacola, FL, 42(10):2063-2077, (2023). https://doi.org/10.1002/etc.5699

Patlewicz, G., K. Friedman, K. Houck, L. Zhang, R. Huang, M. Xia, J. Brown, AND S. Simmons. Evaluating the utility of a high throughput thiol-containing fluorescent probe to screen for reactivity: A case study with the Tox21 library. Computational Toxicology. Elsevier B.V., Amsterdam, Netherlands, 26:100271, (2023). https://doi.org/10.1016/j.comtox.2023.100271

Baker, N., J. Pierro, L. Taylor, AND T. Knudsen. Identifying candidate reference chemicals for in vitro testing of the retinoid pathway for predictive developmental toxicity. ALTEX. Society ALTEX Edition, Kuesnacht, Switzerland, 40(2):217-236, (2023). https://doi.org/10.14573/altex.2202231

Korunes, K., J. Liu, R. Huang, M. Xia, K. Houck, AND C. Corton. A gene expression biomarker for predictive toxicology to identify chemical modulators of NF-κB. PLOS ONE . Public Library of Science, San Francisco, CA, 17(2):e0261854, (2022). https://doi.org/10.1371/journal.pone.0261854

Pierro, J., B. Ahir, Nancy C. Baker, N. Kleinsteuer, M. Xia, AND T. Knudsen. Computational model for fetal skeletal defects potentially linked to disruption of retinoic acid signaling. Frontiers in Pharmacology. Frontiers, Lausanne, Switzerland, 13:971296, (2022). https://doi.org/10.3389/fphar.2022.971296

Chang, X., J. Palmer, A. Lumen, U. Lee, P. Ceger, K. Mansouri, C. Sprankle, E. Donley, S. Bell, T. Knudsen, J. Wambaugh, B. Cook, D. Allen, AND N. Kleinstreuer. Quantitative in vitro to in vivo extrapolation for developmental toxicity potency of valproic acid analogues. Birth Defects Research. John Wiley & Sons, Inc., Hoboken, NJ, 114(16):1037-1055, (2022). https://doi.org/10.1002/bdr2.2019

Isaacs, K., P. Egeghy, K. Dionisio, K. Phillips, A. Zidek, C. Ring, J. Sobus, E. Ulrich, B. Wetmore, A. Williams, AND J. Wambaugh. The chemical landscape of high-throughput new approach methodologies for exposure. Journal of Exposure Science and Environmental Epidemiology . Nature Publishing Group, London, Uk, 32:820-832, (2022). https://doi.org/10.1038/s41370-022-00496-9

Rooney, J., N. Ryan, J. Liu, R. Houtman, R. van Beuningen, J. Hsieh, G. Chang, S. Chen, AND Jon Corton. A Gene Expression Biomarker Identifies Chemical Modulators of Estrogen Receptor α in an MCF-7 Microarray Compendium. CHEMICAL RESEARCH IN TOXICOLOGY. American Chemical Society, Washington, DC, 34(2):313-329, (2021). https://doi.org/10.1021/acs.chemrestox.0c00243

Dawson, D., B. Ingle, K. Phillips, J. Nichols, J. Wambaugh, AND R. Tornero-Velez. Designing QSARs for Parameters of High-Throughput Toxicokinetic Models Using Open-Source Descriptors. ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, 55(9):6505-6517, (2021). https://doi.org/10.1021/acs.est.0c06117

Dawson, D., B. Ingle, K. Phillips, J. Nichols, J. Wambaugh, AND R. Tornero-Velez. Designing QSARs for Parameters of High-Throughput Toxicokinetic Models Using Open-Source Descriptors. ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, 55(9):6505, (6517). https://doi.org/10.1021/acs.est.0c06117

Shah, I., T. Antonijevic, B. Chambers, J. Harrill, AND R. Thomas. Estimating Hepatotoxic Doses Using High-content Imaging in Primary Hepatocytes. TOXICOLOGICAL SCIENCES. Society of Toxicology, RESTON, VA, 183(2):285-301, (2021). https://doi.org/10.1093/toxsci/kfab091

Qu, W., D. Crizer, M. DeVito, S. Waidyanatha, M. Xia, K. Houck, AND S. Ferguson. Exploration of Xenobiotic Metabolism within Cell Lines Used for Tox21 Chemical Screening. TOXICOLOGY IN VITRO. Elsevier Science Ltd, New York, NY, 73:105109, (2021). https://doi.org/10.1016/j.tiv.2021.105109

Richard, A., R. Huang, S. Waidyanatha, P. Shinn, B. Collins, I. Thillainadarajah, Chris Grulke, A. Williams, R. Lougee, R. Judson, K. Houck, Mahmoud A. Shobair, C. Yang, J. Rathman, A. Yasgar, S. Fitzpatrick, A. Simeonov, R. Thomas, K. Crofton, R. Paules, J. Bucher, C. Austin, R. Kavlock, AND R. Tice. The Tox21 10K Compound Library: Collaborative Chemistry Advancing Toxicology. CHEMICAL RESEARCH IN TOXICOLOGY. American Chemical Society, Washington, DC, 34(2):189-216, (2021). https://doi.org/10.1021/acs.chemrestox.0c00264

Song, Y. AND Dan Villeneuve. The adverse outcome pathway for uncoupling of oxidative phosphorylation leading to growth inhibition. ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY. Society of Environmental Toxicology and Chemistry, Pensacola, FL, , 1-9, (2021). https://doi.org/10.1002/etc.5197

Mansouri, K., N. Kleinstreuer, R. Judson, A. Williams, I. Shah, AND A. Richard. CoMPARA: Collaborative Modeling Project for Androgen Receptor Activity. ENVIRONMENTAL HEALTH PERSPECTIVES. National Institute of Environmental Health Sciences (NIEHS), Research Triangle Park, NC, 128(2):27002, (2020). https://doi.org/10.1289/EHP5580

Deisenroth, C., V. Soldatow, J. Ford, W. Stewart, C. Brinkman, E. LeCluyse, D. Macmillan, AND R. Thomas. Development of an In Vitro Human Thyroid Microtissue Model for Chemical Screening (ToxSci). TOXICOLOGICAL SCIENCES. Society of Toxicology, RESTON, VA, 174(1):63-78, (2020). https://doi.org/10.1093/toxsci/kfz238

Borrel, A., R. Huang, S. Sakamuru, M. Xia, A. Simeonov, K. Mansouri, K. Houck, R. Judson, AND N. Kleinstreuer. High-Throughput Screening to Predict Chemical-Assay Interference. Scientific Reports. Nature Publishing Group, London, Uk, 10:3986, (2020). https://doi.org/10.1038/s41598-020-60747-3

Hallinger, D., H. Lindsay, K. Friedman, D. Suarez, AND S. Simmons. Respirometric Screening and Characterization of Mitochondrial Toxicants Within the ToxCast Phase I and II Chemical Libraries. TOXICOLOGICAL SCIENCES. Society of Toxicology, RESTON, VA, 176(1):175-192, (2020). https://doi.org/10.1093/toxsci/kfaa059

Deisenroth, C., D. DeGroot, T. Zurlinden, A. Eicher, J. McCord, M. Lee, P. Carmichael, AND R. Thomas. The Alginate Immobilization of Metabolic Enzymes Platform Retrofits an Estrogen Receptor Transactivation Assay with Metabolic Competence. TOXICOLOGICAL SCIENCES. Society of Toxicology, RESTON, VA, 178(2):281-301, (2020). https://doi.org/10.1093/toxsci/kfaa147

Borrel, A., S. Auerbach, K. Houck, AND N. Kleinstreuer. Tox21BodyMap: A webtool to map chemical effects on the human body. NUCLEIC ACIDS RESEARCH. Oxford University Press, Cary, NC, 48(W1):W472-W476, (2020). https://doi.org/10.1093/nar/gkaa433

Nelms, M., R. Lougee, D. Roberts, A. Richard, AND G. Patlewicz. Comparing and contrasting the coverage of publicly available structural alerts for protein binding. Computational Toxicology. Elsevier B.V., Amsterdam, Netherlands, 12:100100, (2019). https://doi.org/10.1016/j.comtox.2019.100100

Wei, Z., S. Sakamuru, L. Zhang, J. Zhao, R. Huang, N. Kleinstreuer, Y. Chen, Y. Shu, T. Knudsen, AND M. Xia. Identification and profiling of environmental chemicals that inhibit the TGFβ/SMAD signaling pathway. CHEMICAL RESEARCH IN TOXICOLOGY. American Chemical Society, Washington, DC, 32(12):2433-2444, (2019). https://doi.org/10.1021/acs.chemrestox.9b00228

Paul-Friedman, K., M. Martin, K. Crofton, C. Hsu, S. Sakamuru, J. Zhao, M. Xia, R. Huang, D. Stevreva, V. Soni, L. Varticovski, R. Raziuddin, G. Hager, AND K. Houck. Limited chemical structural diversity found to modulate thyroid hormone receptor in the Tox21 chemical library. ENVIRONMENTAL HEALTH PERSPECTIVES. National Institute of Environmental Health Sciences (NIEHS), Research Triangle Park, NC, 127(9):1-16, (2019). https://doi.org/10.1289/EHP5314

Watford, S., S. Edwards, M. Angrish, R. Judson, AND K. Friedman. Progress in data interoperability to support computational toxicology and chemical safety evaluation. TOXICOLOGY AND APPLIED PHARMACOLOGY. Academic Press Incorporated, Orlando, FL, 380(1 October 2019):114707, (2019). https://doi.org/10.1016/j.taap.2019.114707