Skip to main content
U.S. flag

An official website of the United States government

Here’s how you know

Dot gov

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

HTTPS

Secure .gov websites use HTTPS
A lock (LockA locked padlock) or https:// means you have safely connected to the .gov website. Share sensitive information only on official, secure websites.

  • Environmental Topics
  • Laws & Regulations
  • Report a Violation
  • About EPA
Contact Us

Grantee Research Project Results

2014 Progress Report: Rapid Detection of Sewer Pipeline Problems Using Bacterial DNA Markers and Q-PCR Technology

EPA Grant Number: R834871
Title: Rapid Detection of Sewer Pipeline Problems Using Bacterial DNA Markers and Q-PCR Technology
Investigators: Yan, Tao
Institution: University of Hawaii at Manoa
EPA Project Officer: Page, Angela
Project Period: February 1, 2011 through January 31, 2016
Project Period Covered by this Report: February 1, 2014 through January 31,2015
Project Amount: $299,956
RFA: Advancing Public Health Protection through Water Infrastructure Sustainability (2009) RFA Text |  Recipients Lists
Research Category: Drinking Water , Water

Objective:

Sewer pipeline deterioration is the primary cause of sewer accidents that threaten the public health safety. This enormous water infrastructure problem requires a technical solution that can rapidly identify deterioration in a large number of pipelines with ease. The overall goal of this project is to develop a pipeline inspection technology that is based on Q-PCR quantification of bacterial DNA markers in sewage water, which indicate sewer pipe problems and is rapid and high throughput in order to be implemented at sewershed or sewer system level. In this project, the proposed qPCR-based technologies will address two specific sewer pipeline problems: concrete crown corrosion and FOG deposition. The working hypothesis is that these pipeline problems are associated with specific microbial processes and the problem severity levels are quantitatively related to the concentrations of the specific bacterial DNA markers present in the sewage water. The study will be performed through field monitoring and laboratory simulation. Bacterial DNA markers indicative of the different sewer pipeline problems will be first identified, and subsequently Q-PCR methods for the DNA markers will be developed and evaluated under actual field conditions.

Progress Summary:

In the year 2014-2015, the project focused on FOG deposits in sewer systems, including the biodegradation of FOG deposits and the source of long chain fatty acids (LCFAs), which react with calcium ion to form FOG deposits in sewer environments. First, we completed the study on the biodegradation of FOG in sewer environments, and published a journal article on the topic. Laboratory microcosm experiments were conducted to determine FOG biodegradability under various redox conditions that are common in sewer environments. Microbial communities in these microcosms were analyzed by Illumina sequencing of the 16S rRNA gene amplicons. The results showed that overall biodegradation of FOG deposits was very slow and showed different levels of biodegradation under different redox conditions. Considerable biodegradation occurred under the aerobic condition and the anaerobic nitrate-reducing condition, while very limited biodegradation occurred under anaerobic sulfate-reducing condition and methanogenic condition. Microbial community analysis by Illumina sequencing of 16S rRNA gene amplicons identified corresponding microbial communities in the microcosms.

Since FOG deposits in sewer systems are formed LCFAs and calcium ion, we investigated the possibility of grease interceptors (GIs) being a source of LCFAs to sewer pipelines. Bench-scale GIs were established in the laboratory to determine the production of LCFAs with and without microbial activities as well as production of LCFAs under different hydraulic retention times (HRTs). The results showed that although LCFAs could be produced from abiotic, chemical hydrolysis of FOGs in GIs, microbial activities contributed to the majority of LCFAs in GI effluent, which was five times higher than that under only chemical hydrolysis conditions. Similar LCFA profile was found between GI effluent under the impact of microbial activities and FOG deposits. Longer HRT resulted in higher concentration of LCFAs in GI effluent as well as higher percentage of unsaturated LCFAs in total LCFA production within 60 days. However, the largest discharge amount of LCFAs was obtained under short HRT (HRT = 0.5d) while higher portion of produced LCFAs was retained in GIs under HRT = 1d and 2d, suggesting that GIs under short HRT would be a bigger concern for downstream FOG deposit formation. The results are currently being prepared in a research manuscript to be submitted for publication in the near future.

Future Activities:

We now have gained considerable understanding of the microbial processes involved sewer crown corrosion and FOG formation in sewer pipes. Future activities will focus on designing specific qPCR primers to detect these microbial processes in sewer systems. Particular focus will be placed on sewer crown corrosion, as this process appears to be only present in the sewer system and enables specific detection. We also will attempt to develop DNA markers the biodegradation of FOG deposits, which however is more complex due to the upstream processes (such as in grease interceptors) that also might contain such DNA markers.


Journal Articles on this Report : 2 Displayed | Download in RIS Format

Publications Views
Other project views: All 7 publications 3 publications in selected types All 3 journal articles
Publications
Type Citation Project Document Sources
Journal Article He X, Zhang Q, Cooney MJ, Yan T. Biodegradation of fat, oil and grease (FOG) deposits under various redox conditions relevant to sewer environment. Applied Microbiology and Biotechnology 2015;99(14):6059-6068. R834871 (2014)
R834871 (Final)
  • Abstract from PubMed
  • Full-text: ResearchGate-Full Text PDF
    Exit
  • Abstract: SpringerLink-Abstract
    Exit
  • Journal Article Pagaling E, Yang K, Yan T. Pyrosequencing reveals correlations between extremely acidophilic bacterial communities with hydrogen sulphide concentrations, pH and inert polymer coatings at concrete sewer crown surfaces. Journal of Applied Microbiology 2014;117(1):50-64. R834871 (2013)
    R834871 (2014)
    R834871 (Final)
  • Abstract from PubMed
  • Abstract: WileyOnline-Abstract
    Exit
  • Other: ResearchGate-Abstract
    Exit
  • Progress and Final Reports:

    Original Abstract
  • 2011 Progress Report
  • 2012 Progress Report
  • 2013 Progress Report
  • Final Report
  • Top of Page

    The perspectives, information and conclusions conveyed in research project abstracts, progress reports, final reports, journal abstracts and journal publications convey the viewpoints of the principal investigator and may not represent the views and policies of ORD and EPA. Conclusions drawn by the principal investigators have not been reviewed by the Agency.

    Project Research Results

    • Final Report
    • 2013 Progress Report
    • 2012 Progress Report
    • 2011 Progress Report
    • Original Abstract
    7 publications for this project
    3 journal articles for this project

    Site Navigation

    • Grantee Research Project Results Home
    • Grantee Research Project Results Basic Search
    • Grantee Research Project Results Advanced Search
    • Grantee Research Project Results Fielded Search
    • Publication search
    • EPA Regional Search

    Related Information

    • Search Help
    • About our data collection
    • Research Grants
    • P3: Student Design Competition
    • Research Fellowships
    • Small Business Innovation Research (SBIR)
    Contact Us to ask a question, provide feedback, or report a problem.
    Last updated April 28, 2023
    United States Environmental Protection Agency

    Discover.

    • Accessibility
    • Budget & Performance
    • Contracting
    • EPA www Web Snapshot
    • Grants
    • No FEAR Act Data
    • Plain Writing
    • Privacy
    • Privacy and Security Notice

    Connect.

    • Data.gov
    • Inspector General
    • Jobs
    • Newsroom
    • Open Government
    • Regulations.gov
    • Subscribe
    • USA.gov
    • White House

    Ask.

    • Contact EPA
    • EPA Disclaimers
    • Hotlines
    • FOIA Requests
    • Frequent Questions

    Follow.