Grantee Research Project Results
2017 Progress Report: The UCSF Pregnancy Exposures to Environmental Chemicals (PEEC) Children's Center
EPA Grant Number: R835433Center: Center for Integrative Research on Childhood Leukemia and the Environment - 2015
Center Director: Metayer, Catherine
Title: The UCSF Pregnancy Exposures to Environmental Chemicals (PEEC) Children's Center
Investigators: Woodruff, Tracey J. , Gould, Robert , Fisher, Susan J. , Zlatnik, Marya , McMaster, Michael , Stotland, Naomi , Sutton, Patrice , Morello-Frosch, Rachel , Gerona, Roy , Sen, Saunak
Current Investigators: Woodruff, Tracey J.
Institution: University of California - San Francisco
EPA Project Officer: Hahn, Intaek
Project Period: June 1, 2013 through May 31, 2018 (Extended to May 31, 2019)
Project Period Covered by this Report: June 1, 2017 through May 31,2018
Project Amount: $3,312,848
RFA: Children's Environmental Health and Disease Prevention Research Centers (with NIEHS) (2012) RFA Text | Recipients Lists
Research Category: Children's Health , Human Health
Objective:
Research Project I: Modeling the Effects of EDCs on Early Stages of Human Placental Development
The hypothesis of our PEEC Children’s Center is that environmental chemical (EC) exposures have harmful effects on human in utero development and on children’s health. Project 1 brings together a team of basic scientists who are investigating the impact of brominated diphenyl ether-47 (BDE-47), a flame retardant (FR), and perfluorooctanoic acid (PFOA), a repellent, on human placental development. The goal of the project is to map, at high resolution, the effects of these chemicals on the transcriptome (Aim 1), the epigenome (Aim 2) and the functional consequences of the alterations we observe (Aim 3). In Aim 1, we will use our in vitro model of human placentation and an unbiased approach, RNA-seq, to understand the pathways in which BDE-47 and/or PFOA are working in terms of effects on trophoblast function. Aim 2 uses the same experimental design to carry out a comprehensive analysis of the effects of these chemicals on histone modifications and DNA methylation. Finally, in Aim 3, we will study the functions of molecules that are targets of the ECs of interest and which we suspect play important roles in human placental development. These experiments will employ functional and molecular analyses that will allow us to phenotype human trophoblast cells and their defining properties in relation to environmental chemical exposures.
Research Project II: Mid-Gestational Exposure to EDCs and Effects on Placental Development:
Our project tests the hypotheses that 1) polybrominated diphenyl ethers (PBDEs), perfluorinated chemicals (PFCs), and select environmental organic acids (EOAs) accumulate differently in human fetuses than in pregnant women during the 2nd trimester of pregnancy, and 2) these chemical exposures negatively impact placental development and function, an important outcome that can adversely affect in utero growth, prenatal development, birth weight, and thus, childhood and adult health. Compelling scientific data show that human in utero development is highly susceptible to disruption by exposure to chemicals, in particular endocrine disrupting agents, but a major impediment to understanding these risks is the lack of human data on fetal exposures and on the mechanisms by which chemicals can adversely impact in utero development. Through our work as a Formative Center, we provided some of the first human data characterizing midgestation chemical exposures and mechanisms of adverse effects.
Specifically, we detected PBDEs, PFCs and EOAs such as Bisphenol-A (BPA) in 99-100% of the pregnant women and 95- 100% of fetuses (liver and umbilical cord blood) in our study population. In addition, in vitro experiments that employed our novel human trophoblast progenitor cell (TBPC) model of placental development demonstrated that environmentally relevant doses of PBDE-47 (a PBDE congener) compromised TBPC self-renewal in an undifferentiated state while promoting differentiation (see Project 1, Aim 1). Both effects are hallmarks of poor placental development and have been shown to be risk factors for reduced fetal growth, preterm delivery and preeclampsia. Our project will significantly advance this promising line of research to include a larger sample size, a more diverse set of biological specimens and a wider range of measured chemicals. We will also test the impact of these chemicals on in utero development by assessing the relationship between direct measures of chemical exposure and morphological and molecular markers that enable an assessment of placentation. Accordingly, our specific aims are to:
- Compare maternal serum, placenta and fetal liver levels of a broad range of chemicals through traditional and novel biomonitoring approaches. We will collect matched biological specimens from 130 pregnant women obtaining elective 2nd trimester pregnancy terminations (excluding cases in which pregnancies are complicated by fetal anomalies or maternal smoking). We will analyze the samples for 17 PBDEs and 12 PFCs. We will also use a novel biomonitoring approach based on Time-of- Flight Liquid Chromatography-Mass Spectrometry (LC-QTOF/MS) combined with traditional analytic methods to identify and quantify exposure to the 5 most frequently detected EOAs in our study population. We will compare measurements of these 34 chemicals in maternal serum to those in the placenta and fetal liver. Thus, at the conclusion of these experiments we will have a much broader understanding of the most significant environmental chemical exposures during pregnancy and the relationships between levels detected in the maternal blood, placenta and fetus.
- Evaluate the relationship between placental disruption and exposure to PBDEs, PFCs and select EOAs. We will measure known morphological and molecular markers of placenta development in the 2nd trimester placentas that are collected in Aim 1. Then we will evaluate the relationship of these markers to individual and cumulative metrics of PBDE, PFC and EOA exposure measured in the same placental samples. Additionally, the goal of Project 1 is to identify novel PBDE and PFC placental targets (specifically, PBDE-47 and PFOA, respectively). In Aim 3 of that Project, we will also evaluate the relationship between these endpoints, which will be analyzed in the same placental samples, and individual and cumulative metrics of PBDE, PFC and EOA exposure. Thus, at the conclusion of these experiments we will have important new information about the placental effects of endocrine disrupting chemicals.
Working with our Community Outreach and Translation Core, we will translate our findings to the clinical and policy communities, thus providing key inputs for improving public policy approaches to identifying, assessing and preventing human risks from these endocrine disrupting chemicals.
Research Project III: Effects of EDCs and Chronic Psychosocial Stress of Fetal Growth
This project will examine the hypothesis that prenatal exposures to endocrine disrupting chemicals (EDCs) affect fetal growth outcomes such as birth weight and small for gestational age (SGA), and whether these adverse effects are magnified by chronic psychosocial stress. We will conduct a prospective study in an economically and ethnically diverse group of pregnant women in order to evaluate two important types of environmental exposures: 1) EDCs - polybrominated diphenyl ethers (PBDEs) and perfluorinated chemicals (PFCs); and 2) chronic psychosocial stress, using objective and subjective measures of participants’ perceived stress, social standing, physical and social environments, and biomarkers of chronic stress response. We hypothesize that exposure to both EDCs and stress may have synergistic effects on fetal growth. Accordingly, this project has three specific aims:
- Evaluate the relationship between prenatal PBDE and PFC exposures and birth weight. Hypothesis: Higher levels of PBDEs and PFCs in maternal serum are independently associated with lower birth weight and SGA, and concurrent exposures to these two classes of compounds have cumulative effects on birth weight. We will measure PBDEs and PFCs in serum from pregnant women (N=450) during their second trimester and collect demographic, pregnancy history, and birth outcome data at delivery to analyze the following outcomes: 1) birth weight, 2) low birth weight (less than 2500 grams), and 3) SGA (birth weight less than the 10th percentile for the infant’s gestational age based on growth curves accounting for race/ethnicity and sex).
- Evaluate the relationship between measures of chronic psychosocial stress in the maternal-fetal unit and birth weight outcomes. Hypothesis: Exposures to chronic stress is associated with lower birth weight and SGA. We will collect three types of chronic stress measurements: 1) Metrics based on participants’ perceptions of their social standing and their chronic stress exposures in household, neighborhood, and work environments; 2) geocoded metrics of neighborhood socioeconomic status and civic engagement capacity; and 3) biological markers of chronic stress response in the maternal-fetal unit, including telomere length in umbilical cord leukocytes and corticotropin releasing hormone (CRH) levels in maternal plasma. We will examine whether fetal and maternal biomarkers of stress response mediate the relationship between perceptual and geocoded measures of chronic stress exposure and adverse birth weight effects.
- Assess whether exposure to chronic psychosocial stress in the maternal-fetal unit modifies the relationship between PBDE and PFC exposures and birth weight outcomes. Hypothesis: The effects of prenatal PBDE and PFC exposures on birth weight are modified by exposure to chronic stress in the maternal-fetal unit. We will evaluate potential interactions between the chemical exposures and chronic stress exposure on birth weight. Our approach to modeling chemical and chronic stress exposures will be informed by our analytical results from Aims 1 and 2. The ethnic and economic diversity of our study population will provide a unique advantage for enhancing scientific understanding about the range of prenatal exposures to persistent and ubiquitous EDCs and their effects on fetal growth.
Core A: Community Outreach and Translation Core (COTC):
Aim 1: Communicate the Science Broadly
Aim 2: Harness the Evolving Science to Healthcare
Aim 3: Advance Prevention-Based Public Policy
Core B: Administrative Core
Aim 1: Provide the administrative support for the Center.
Aim 2: Facilitate the communication and interactions within and outside of the Center.
Aim 3: Facilitate the career development and mentoring of the Faculty Development Investigator (FDI).
Progress Summary:
Research Project I: Modeling the Effects of EDCs on Early Stages of Human Placental Development
During the fifth project period, we continued to make progress and summarize/finalize results related to Aims 1-3. In this project, we are using a primary human cytotrophoblast (CTB) model system in which we have over 20 years of experience to study placentation in normal pregnancy and in pregnancy complications. We also selected this primary placental cell model to leverage recently generated transcriptomic and epigenomic data due to our participation in the NIH-funded Roadmap Epigenome Mapping Center. From these studies, we gained a unique understanding of the transcriptomic and epigenetic landscape of CTBs and other extraembryonic tissues in vivo under normal physiological conditions. This detailed information provides us a baseline for understanding molecular perturbations that result from exposure to environmental chemicals, the goal of this project.
With regard to Aims 1 and 2, we conducted transcriptomic and methylation analyses of the effects of BDE-47 exposure in our CTB model system. Based on our dose/time response investigations completed in Year 1 and 2 which established relevant timing and dosage parameters in our model, we conducted transcriptomic and epigenomic analyses in Year 3, which included: 1) a sub-cytotoxic concentration of BDE-47 (1µM) which was biologically-effective in our model system and relevant to human exposures; and 2) two exposure windows of interest in cultured CTBs, which paralleled significant dynamic changes in cell migratory activity and expression of genes linked to morphogenesis, cell motility, and vascular remodeling pathways. These fundamental cellular and molecular processes are hypothesized to underlie the critical functions of CTBs in vivo, such as uterine invasion, vascular remodeling, and establishing robust physical and physiological connections between the placenta and uterus.
In CTBs, we examined responses to BDE-47 exposures after 24h due to reports suggesting PBDEs do alter gene/protein expression in trophoblast cell lines at equivalent exposure durations (2) and our initial dose-response investigations in Years 1 and 2. We collected RNA/DNA samples simultaneously from 3 independent cultures of 2nd trimester human CTBs which were exposed to either BDE-47 (1 µM) or vehicle control (1% DMSO; 12 total samples for each analysis). To evaluate gene expression, we used Affymetrix GeneChip Human Gene 2.0 ST Arrays, which contains probes for over 30,000 coding transcripts. For epigenomic analyses, we measured global methylation using Illumina Infinium HumanMethylation450 BeadChip arrays. This approach enabled us to investigate methylation levels for ~99% of genes and ~96% of CpG islands in the human genome. In Years 4-5, we finalized the analysis of these datasets and experimental studies aimed at confirming changes on the RNA/protein level of specific targets. Following data normalization, we applied a fixed effects linear model (ANOVA) to determine differentially expressed (DE) genes due to BDE-47 exposure, culture time, and gestational age. Our previous experiments in (unexposed) cultured CTBs and in vivo suggest that culture-time and gestational age influences the expression of hundreds of genes important for placental development and function, therefore, we used a statistical approach that controls for these variables. In total, we identified 276 genes to be significantly differentially expressed (DE) due to BDE-47 exposure (ANOVA: p ≤ 0.025, absolute FC > 1.25). In general, expression changes due to exposure of BDE-47 were similar between the two 24h- exposure intervals despite CTBs being exposed at two different timepoints (3 vs. 15h post-plating), with 100% of DE genes displaying common trends in response to BDE-47 (y = 0.98x, R2 = 0.81). In total, 159 (58%) genes were upregulated and 117(42%) genes were downregulated due to BDE-47 exposure. The majority of enriched biological processes were driven by upregulated transcripts. They included morphogenesis, vasculature development, cell differentiation, cell migration, signal transduction, inflammatory response, protein metabolism, and regulation of biosynthetic process- related pathways. GO terms related to lipid and steroid metabolism were overrepresented by downregulated targets. We identified several novel genes dysregulated associated with PBDE exposure. Using qRT-PCR, we confirmed targets across a BDE-47 concentration range of 0.1-10µM. We observed significant upregulation of IL6, MMP1, GREM1, FABP4, and PLAC4; and downregulation of GPR34, SCD, HMGCS1 and FABP7 with BDE-47 (p < 0.05). These validated targets represent key members of diverse functional pathways involved in placental development, including: trophoblast differentiation, inflammation, fatty acid metabolism, steroid metabolism and/or morphogenesis. Minimal changes were observed at concentrations ≤ 0.1µM. In summary, our transcriptomic results suggest BDE-47, in a concentration dependent manner, to perturb known and undefined pathways linked with environmental toxicity and placental development.
In parallel with global mRNA analyses, we profiled the CpG methylome of BDE-47 (1µM) and vehicle exposed CTBs following a 24h duration (also initiated at 3h or 15h post-plating). All data were processed using a state-of-the-art pipeline includes methylumi background correction and normalization operations. We identified 758 CpGs as differentially methylated (DM) with BDE-47 exposure (p ≤ 0.005; change ≥ 2.5%). In general, BDE-47 increased global CpG methylation (0.8 ± 0.2%), heightened when the analysis was constrained to BDE-47 DM CpGs (3.4 ± 0.3%). Ninety-three percent of BDE-47 DM CpGs had increased methylation (708/758 total). On average, methylation changes due to BDE-47 were similar whether exposures were initiated at 3h or 15h (y=0.90x, R2=0.69). Within the BDE-47 DM CpG subset, we identified underrepresentation of CpGs proximal to promoter regions (e.g., TSS1500, TS200, 1st Exon) and enriched for intergenic regions. GO analyses of genes near BDE-47 DM CpGs indicated enrichment of pathways involved in hormone response, cellular projection, signaling, response to oxygen-containing compounds, morphogenesis, and vesicle transport/localization. We identified an enrichment of DM CpGs on chromosomes 10 and 11 and a relative absence on chromosome 18. These analyses pointed us towards finding an interesting DM CpG cluster on Ch. 11p15.5 known to play a critical role in gestational development and poised to be sensitive to environmental exposures. Interestingly, in general, BDE-47- induced changes in DNA methylation did not correlate with mRNA expression levels. In total, only four genes (3 unique mRNAs) whose promoters were DM had mRNA levels that were also responsive to BDE-47. These initial -omic studies provide us information regarding our experimental design and provide clues to prepare for more resource-intensive investigations that will be initiated in the near future as we expand this model for placental toxicological investigations.
As related to Aim 3, we developed tests to evaluate 1) migratory activity or 2) the ability of cells to invade using enhanced workflows that include fixation, nuclear staining/immunofluorescence, multiple image capture (Leica), and semi-automated data content analysis (Volocity). We added automated components to classical methodologies to reduce human error and increase efficiency in assessing functional endpoints across multiple conditions. We determined key timepoints in culture by conducting time-course evaluations of migratory activity and cell invasion. Using the standard 2-D culture system described above, in unexposed cultures, we quantified migratory activity/aggregation of CTBs within the first 40h of culture by measuring the average distance between > 20,000 cells per well as a parameter of activity. To assess cell invasion, we cultured cells in a suspended transwell (Corning) insert covered with Matrigel and auto-counted (Volocity) the total number of cellular projections penetrating the substrate that appear on the underside of the permeable filter. Similar to migration assays, we observed significant invasion within the first 40h of culture, suggesting that the invasive/migratory programming that these cells undergo in vivo is conserved in culture. We are currently finalizing the data in which we assessed BDE-47 or -99 exposed vs. control CTBs. In our initial experiments, cell invasion was inhibited at concentrations of 5μM BDE-47 or -99. These assays will enable us to link mechanistic relationships between environmental exposures and morphological phenotypic behaviors relevant to the in vivo condition. Furthermore, these endpoints will be combined with the other morphological (time-lapse imaging) and molecular (immunolocalization, immunoblot, qRT-PCR) assessments that we have used to characterize environmental (i.e., BDE-47 and PFOA) effects in CTBs. Aim 3 experiments are designed to analyze the functions of molecules that are targets of the ECs of interest and which we suspect play important roles in human placental development. The deep understanding we are developing of the normal transcriptomic and epigenomic landscape of CTBs will help put the data we generate in the exposure experiments in the proper context and inform future targeted analyses.
To understand the relevancy of concentrations tested and determine the degree of bioaccumulation and metabolism of BDE-47 in our CTB model system, we quantified BDE-47 and hydroxylated metabolites of the parent species, i.e., 5-OH-BDE-47, 6-OH-BDE-47, in CTBs (cell and media fractions) exposed to BDE- 47 via liquid chromatography–mass spectrometry (LC-MS). The results indicated that BDE-47 significantly bioaccumulated in the cellular fraction, in a concentration-dependent manner. After 24h, BDE-47 concentrations were 0.7µM or 1.2µM in the supernatant of cells initially exposed to 1µM or 5µM, respectively. Additionally, we computed the total µg recovered of BDE-47 in the media and cellular fractions. BDE-47 media (µg) to cell (µg) ratios differed between the two dose groups (1 vs 5µM). In cultures exposed to 1µM BDE-47, we observed a cell:media ratio of 0.6:1µg. In cultures exposed to 5µM, BDE-47 partitioned between the cell and media fractions at 3.1:1µg. These results suggest bioaccumulation of BDE-47 in the cellular fraction, and the rate of cellular uptake to be dependent on the magnitude of the initial testing concentration. Total recovery (media + cellular fractions) were within 10% of expected estimates. Limited metabolism of BDE-47 was observed in CTBs exposed to 1 or 5µM, with only ~0.0003% of the total BDE-47 recovered (media and cellular fractions) present in the hydroxylated form. Furthermore, only the 6-OH-BDE-47 metabolite (not the 5-OH), was identified in the cellular fraction in one of the three CTB samples evaluated. In addition to BDE-47, four of the eighteen PBDE congeners evaluated, i.e., -17, 28, -85, -99, were detected at low levels in the majority of all samples, representing < 0.4% of the ∑PBDEs. No form of BDE-47 was present in any samples exposed to the vehicle control. Overall, these results indicate that exposures in this study consisted predominately of the BDE-47 parent compound and only limited hydroxylated metabolism occurred in CTBs within the first 24h of exposure.
We re-submitted a manuscript entitled “Genomic Profiling of BDE-47 Effects on Human Placental Cytotrophoblasts.” This manuscript describes a global transcriptional analysis of time-dependent changes in gene expression occurring in primary CTBs as they differentiate in vitro. This study serves as a baseline for our environmental investigations. We will present our transcriptomic analyses of BDE-47 and complementary results in an abstract: "Toxicogenomic Profiling of BDE-47 Effects in Human Primary Villous Cytotrophoblasts”, at the Teratology Society Annual Meeting in Denver, CO in June, 2017. Dr. Robinson has also presented results from these analyses in several forums at UCSF, including for the Department of Obstetrics, Gynecology & Reproductive Sciences, “Grand Rounds”, and Center for Reproductive Sciences, “Annual Retreat”.
Research Project II: Mid-Gestational Exposure to EDCs and Effects on Placental Development:
Building on our accomplishments from FY1–FY4, we also achieved a number of accomplishments for Project 2 in FY5:
- Methods for PBDE analysis in serum and liver were developed by our collaborators at California Department of Toxic Substances (DTSC), Drs. Myrto Petreas and June-Soo Park. Methods development for PBDE analysis in placenta was also finalized. In December of 2016, we completed PBDE chemical analysis on all 130 matched sets of maternal serum, placenta, and fetal liver.
- Over the past year, our post-doc, Julia Varshavsky, completed a correlation analysis evaluating PBDE level across biological matrices, including maternal serum, the placenta, and fetal liver tissues. Statistical methods included linear regression, the non-parametric Kendall’s tau correlation, and methods that account for left-censored chemical exposure data. She presented this work at the joint annual meeting of the International Society of Exposure Science and the International Society of Environmental Epidemiology which took place August 26-30, 2018. Julia will be drafting a manuscript of the results from this analysis in the coming weeks that we expect to submit in October 2018. In addition, we have combined the maternal serum PBDE data from the N = 130 paired samples with previous maternal serum PBDE data from women who were also recruited at the Women’s Options Clinic in San Francisco General Hospital between 2007 and 2012 in order to evaluate geographical, temporal, and racial/ethnic differences across a larger study population.
- Placenta samples were fixed in formalin for future immunohistochemistry analyses. Based on findings in Project I, which evaluated the effects of BDE-47 on functional and transcriptomic levels in 2nd trimester human primary cytotrophoblasts, potential biomarkers of PBDE were identified. We selected four of these targets to further interrogate as potential biomarkers of PBDE exposure in vivo, which included, MMP11-3 and PLAC44, molecules with suspected roles in placental development; and HMGCS15 and SCD6, members of the cholesterol/fatty acid biosynthesis pathway. We also added proposed biomarkers of pre-eclampsia (GH2, PLAC1) and negative controls/molecules not altered by PBDEs in vitro (NOTUM, EFEMP1) to our analyses. Using antigen-specific antibodies, we independently evaluated the localized expression of each of these targets within a subset of placentas (n = 12), pre-identified to be in the upper (> 10%) or bottom (> 90%) percentiles of ∑PBDE burden within our sample set. Two sections from each placenta were probed and scored blindly by two investigators to determine the relative expression of each marker using a semi-automated method that we developed to quantify relative immunofluorescence intensity within regions of the maternal-fetal interface. We analyzed six regions in total: 1) CTBs invading into the decidua (interstitial invasion); 2) decidual cells; 3) CTBs of the proximal and distal column, 4) villous trophoblasts (STBs and CTBs), 5) mesenchymal cells within the floating villous, and 6) CTBs invading the maternal artery (endovascular invasion). All sections were co-stained with cytokeratin (CK), a marker of CTB populations, and 4', 6-diamidino-2-phenylindole (Dapi), a DNA nuclear binding molecule. Specific patterns were observed. For example, SCD was expressed highest in the floating villous CTBs, whereas PLAC4 was predominately expressed in the villous core mesenchyme, interstitial CTBs, and decidua. Relative intensity values for each of the eight biomarkers were summarized. We observed good agreement between investigators (r=0.8) and across technical replicates (r=0.7). Staining patterns varied across individual placentas.
- We examined the correlation of these molecular markers with placental and serum PBDE levels in the pilot sample (n = 12) using k-means clustering, linear regression, and anova (to test the difference in biomarker expression between high and low PBDE exposure groups) in order to select one candidate biomarker for additional analysis in a larger sample of our study population (n = 50). We chose to proceed with MMP1, a molecule that breaks down the extracellular matrix during CTB invasion of maternal decidua and is thus critical for placentation. Over the past year, we sectioned and stained the additional 50 placental samples, which were selected as n = 25 high PBDE exposures (in the top 10th exposure percentile of our study population) and n=25 low PBDE exposures (in the bottom 20th percentile of PBDE exposures), to assess the expression of MMP1 and two additional molecular markers, VE-Cadherin and ITGA1. In addition, we assessed several morphological endpoints in these placental samples, including white blood cell count (leukocyte deposition), the percent of floating villi (fetal side) with fibrinoid deposition, as well as the percent of area in the basal plate region (maternal and fetal side) with fibrinoid deposition. We also captured other histopathological endpoints, including the percent of anchoring villi with fibrinoid deposition and the percent of remodeled maternal blood vessels, but these placental features were less prominent in our samples and thus not as quantifiable. We have just begun the statistical analysis portion of this study and will continue to analyze these data in the coming months. The results will provide unique insight into the relationship between proposed molecular PBDE-targets in the placenta and ∑PBDE levels during mid-gestation, when pathologic alterations with the greatest functional significance may occur.
- Methods for PFCs analysis in serum was developed by Dr. Roy Gerona at UCSF Department of OB/Gyn and Reproductive Sciences. In consultation with our project officers at NIEHS and EPA, a decision was made for the Gerona Lab to analyze PFCs in maternal serum only. It was costlier and took more time to develop the method than anticipated, and to meet budget and time goals, we modified the scope to measure PFCs in maternal serum only. Once these data are available, we will be analyzing them in relation to the placental biomarkers described above.
- Dr. Roy Gerona has completed methods for non-targeted analysis of EOAs in serum using LC- QTOF/MS, and a manuscript has been submitted and is currently under review. The non- targeted analysis of maternal serum samples is complete and we recently published a paper on this analysis in Environmental Health Perspectives (Wang et al., 2018) which received widespread press coverage.
Research Project III: Effects of EDCs and Chronic Psychosocial Stress of Fetal Growth
In fund Year 5 (FY) we finished recruiting participants at Zuckerberg San Francisco General Hospital (ZSFG), and the Betty Irene Moore Women’s Health Hospital at Mission Bay (MB). We exceeded our recruitment goal by achieving a final recruitment number of 510 participants in August of 2017.
We collected 507 2nd trimester maternal serum samples, 502 2nd trimester maternal urine samples, 205 3rd trimester maternal urine samples, 362 3rd trimester maternal serum samples, and 332 umbilical cord blood samples.
PBDE methods development in serum has been completed by our collaborators at California Department of Toxic Substances Drs. Myrto Petreas and June-Soo Park; all maternal serum samples have been transported to the DTSC for PBDEs analysis The first batch of PDBEs analysis (n = 237) was completed in September of 2017. The remaining 276 samples will be completed in the fall of 2018.
The Fisher lab completed CRH analysis on 434 maternal plasma samples in 2018. Also, the Blackburn Lab completed telomere analysis on approximately 300 cord whole blood samples and in September 2018, we will receive the telomere results for our final ~30 cord blood samples.
We hired two post-doctoral fellows, Drs. Monika Izano, an epidemiologist from UC Berkeley’s School of Public Health, and Elizabeth Hom, from the University of Washington’s School of Public Health, both of whom have been collaborating with our team to conduct data analysis and manuscript preparation during this project year. This year we had two abstracts accepted for presentation at the 2018 ISEE/ISES conference in Ottawa, Canada. One abstract, to be presented as a poster, examined effects of maternal psycho-social stress on newborn telomere length (TL) and gestational age. This preliminary analysis applied three statistical approaches, traditional regression analysis, combined with data driven, agnostic models including variable importance analysis, and TMLE, to examine these relationships. VIM analysis found that stressors predicted more verifiability in telomere length and gestational age, compared to biological factors and measures of maternal socioeconomic status, TMLE results suggested relationships between maternal perceived stress exposure depressions associated with shorter TL, while job strain and discrimination were associated with longer TL. We will assess the robustness of these results once receive the rest of the telomere data among our participants. The second abstract, accepted as an oral presentation, examined associations between PFAS and biomarkers of chronic stress response applying similar traditional and agnostic statistical techniques. We found significant associations between PFNA and total PFAS levels and maternal CRH levels, with chemicals explaining more of the variance in CRH than either SES or maternal biological factors in the VIM analysis. However, we did not see any association between maternal PFAS levels and telomere length in any of our statistical models. With support from an Administrative Supplement, we collected 50 placentas from women in our CIOB2 cohort. In Project 1 of our UCSF PEEC Children's Center, we have developed an in vitro model of human placentation to study the effects of PBDEs and PFCs on trophoblasts—the basic building blocks of this organ—at transcriptomic, epigenomic and functional levels. In Project 2, we are integrating exposure science with placental biology by using targeted and non-targeted biomonitoring methods to measure human maternal and fetal exposures to PBDEs, PFCs and
Environmental Organic Acids (EOAs) during the second trimester, and the relationship between these exposures and morphological and molecular markers of placental development. We have been seeking funds to assess the validity of these in vitro an in vivo pathological features and molecular markers of adverse placental effects observed during early periods of fetal development for placental effects during the third trimester of pregnancy in our CIOB2 pregnancy cohort.
We are also collaborating with a colleague at San Francisco State University in our pending application in response to USEPA’s Early Career Awards: Using a Total Environment Framework (Built, Natural, Social Environments) to Assess Life-long Health Effects of Chemical Exposures, EPA-G2017-STAR-D2 to leverage the CIOB cohort data to examine interactions between aspects of the built, natural, and social environment on birth outcomes. Exposures of interest will include 1) residential proximity to traffic and traffic-related air pollution; 2) neighborhood green space; and 3) neighborhood social stressors related to gentrification and housing instability. While this grant received an excellent score and outstanding review, due to program funding cuts our application was ultimately not funded. We are continuing to seek funding to at partially support this work through UCSF’s Pre-term birth Initiative.
Core A: Community Outreach and Translation Core (COTC)
Aim 1: Communicate the Science Broadly: Updated and printed our series of All That Matters brochures in Spanish and English http://prhe.ucsf.edu/cuestiones-de-salud-enlaces. From June 2017, we have distributed an additional 1710 print versions of Toxic Matters and have tracked 3834 electronic downloads, for a total distribution of 5544 copies. Created and released (in fall 2017) 60 MiNueTs (https://www.youtube.com/watch?v=yMdcSKmaiw&list=PL2Ux0VQXdbl8rfj9V8uyVQaZR99zEhUcv) an educational video series which investigates how toxic chemicals are undermining our health. The videos were extremely well received! Based on requests from colleagues on our distribution list, the videos were recently translated and now have Spanish subtitles and have been viewed 4,911 times since its release in 2017. Video lectures on the links between the environment and patient health presented by the foremost leading reproductive health professionals in the U.S. and disseminated through UCTV To date, together these lectures have been viewed over 400,000 times. Presented Making TSCA Matter to Workers and Families at APHA in Nov. 2017, which explain reforms to the TSCA statute that may be used to safeguard workers from exposures to toxic chemicals; describe data and other information about the risks posed by workplace chemicals that may be considered by EPA; discussed the pending and likely legal disputes that will shape the construction of key provisions of the new law; representing the work of FIGO internationally in 4 countries and Dr. Jeanne Conry presented at the 2017 SLCOG (Sri Lanka College of Obstetricians and Gynecologists) Golden Jubilee Congress (August 3-6); the Ecuador Annual Meeting (Aug 9-12); the FLASOG (Federación Latinoamericana de Ginecología y Obstetricia) 22nd Congress of Latinamerican Obstetricians and Gynecologists (Nov 5-9); the AOGO (Association of Obstetricians & Gynaecologists of Odisha) 61st AICOG (All India Congress on Obstetrics and Gynaecology) (Jan 17-21). With RDEH Co-chair Dr. Linda Giudice and members Drs. Nate DeNicola and Marya Zlatnik, Dr. Jeanne Conry presented the work of FIGO at the WHO (World Health Organization) Second Meeting on Avoidable Early Environmental Exposures (Nov 27-28). Also, at the WHO (World Health Organization) Second Meeting on Avoidable Early Environmental Exposures (Nov 27-28), Dr. Marya Zlatnik presented our work in reproductive environmental health education as well as the Pediatric Environmental Health “A Story of Health” e-book, and since the beginning of February our team has been actively engaged in providing environmental health education (lectures, presentations, consultation, testimony, CME, etc.) to diverse audiences of health professionals, policy-makers, and students. During this time period we gave 18 presentations to over 700 attendees.
Aim 2: Harness the Evolving Science to Healthcare: Inquiry: In August 2017 we were invited to create and implement an environmental health course as part of the “Inquiry” deep-dive component of the Bridges curriculum – a mandatory education for all 2nd year medical students. Our team was subsequently asked to create another Inquiry course for August 2018, which will include Dr. Woodruff providing a foundational lecture on the importance of Environmental Health and a case study on the impacts of environmental exposures on infertility, adapted from The Story of Health created by the Pediatric Environmental Health Specialty Unit (PEHSU).
Elective: In fall 2017 we developed and implemented the “Women, the Environment, and Physician Activism: Encouraging Activism through Education” elective for students in the schools of medicine, nursing, pharmacy, and dentistry, and will again implement the elective in fall 2018. We have offered 6 elective courses since 2013, including 4 in the School of Medicine and 2 in collaboration with the School of Pharmacy. Since its inception, between 300-400 students have taken this course and 14 medical students have lead its planning.
LifeStages syllabus: In summer 2017 we revised the LifeStages syllabus into a “Reader” format for the August 2017 lecture, which compiled the material in a more accessible manner for students. In fall 2017, we partnered with Mark Miller and Stephanie Holm from the Western States Pediatric Environmental Health Specialty Unit (PEHSU) to develop a clinically-focused model for integrating environmental health content into all topic areas of the LifeStages medical education curriculum reader. LifeStages is the course material of the new Bridges Medical Education Program that contains all of the lectures and related readings for the Reproductive health, Pediatric, and Geriatric subjects the 2nd year medical students are taught. Working with a 4th year medical student, we used the model to develop the environmental health content for the reader to generate content for 10 syllabus topics/lectures initially focused in reproductive health. Our collaboration with Washington State University resulted in an invited presentation about our medical education work at the 10th World Congress Alternatives and Animal Use in the Life Sciences conference in August 2017: http://wc10seattle.org/2017/General- Information.aspx
Building on many of the relationships we developed through the UC Carbon Neutrality Initiative, which produced a core group of academics and students across UCSF who are working to embed environmental health into their area of the curriculum, we are growing the Environmental Health Initiative and expanding collaborations across the Schools of Medicine, Nursing, Pharmacy, and Dentistry on the topic of environmental health in healthcare education and practice. Two of our UC Carbon Neutrality Initiative (CNI) fellows, Carolyn Rennels and Gabriela Weigel, were responsible for organizing and implementing the “Women, the Environment, and Physician Activism: Encouraging Activism through Education” elective referenced above.
Our environmental health medical education was featured in a New York Times article (https://www.nytimes.com/2017/11/21/opinion/flint-doctors-chemical-exposure.html ) which prompted several colleagues to request more information about our work, including Lynne Parsons Heilbruns at UT Health Science Center San Antonio, with whom we are sharing resources and will be presenting her work on chemicals in molars as a biomarker to perinatal exposure to our research group and Melissa Pavelack, a pediatric resident at Advocate Children’s Hospital in Chicago, with whom we shared resources and advised in her creation of a new curriculum on pediatric environmental medicine at Midwestern University. We are collaborating with colleagues from Mt. Sinai in the evaluation of health professional environmental health/training materials.
Aim 3: Advance Prevention‐Based Public Policy: Our goal to improve the use of science in decision making to achieve safer building materials and consumer product has been significantly advanced by our collaboration with Touro University. Our plans to leverage current data on formaldehyde and asthma to a broader set of outcomes, especially cancer, will be influential in decision-making on common building materials used in affordable housing: composite wood products. The U.S. Environmental Protection Agency (EPA) considered cancer outcomes in its Formaldehyde Emissions Standards for Composite Wood Products, which has been subject to litigation and unnecessary controversy. Furthermore, how to address financial conflicts of interest in scientific research remains an unresolved issue. In addition to building the evidence base on formaldehyde, the ultimate product of this work will inform general systematic review methodology and incorporation of financial conflict of interest information in evaluating the quality of research studies. Our collaboration with a new partner, Touro University, has been a tremendous success, generating training opportunities in systematic review methods with faculty and students. Developing this new pipeline of scientists is instrumental to ensuring the implementation and evolution of systematic review methods. As we look forward to the completion of this project, we are in active discussion with Touro to further our work with new systematic review projects. This project is contributing to our long-term outcomes and overall objectives through the training of the future generation of scientists in systematic review methods, which will increase the uptake of systematic and transparent methods for reaching evidence-based decisions in environmental health. Our work on "Double Jeopardy," i.e., cumulative co-exposure to social stressors such as poverty and toxic environmental chemicals, has been presented by Dr. Rachel Morello-Frosch (“Cumulative prenatal exposures to exogenous chemicals and psychosocial stress”) speaking at the EPA/NIEHS Children’s Centers Annual Meeting in Oct 2017 and Dr. Tracey Woodruff presenting in Dec 2017 at an event convened in collaboration with UCSF Benioff Children’s Hospital: “Conversations on Children’s Health: Toxic Chemicals and Toxic Stress.” As the science on cumulative risk continues to develop, we also need evaluation methods that incorporate the most current science on cumulative exposures, stressors and impacts. To establish the state of the field on such methods, we published a paper reviewing modeling methods utilized to quantify the cumulative effects of multiple stressors in previous studies. We blogged about our results and promoted on social media, providing policy context and recommendations for a policy-focused audience. (References: Huang H, Wang A, Morello-Frosch R, Lam J, Sirota M, Padula A, et al. Cumulative Risk and Impact Modeling on Environmental Chemical and Social Stressors. Curr Environ Heal Reports. 2018 Feb 13;5(1):88–99. Blog: 1+1>2: Evaluating how risks of pollutants and stressors stack up https://prheucsf.blog/2018/03/05/112-evaluating-how-risks-of-pollutants-and-stressors-stack-up/).
We have continued to implement our systematic review training curriculum with academic, government, NGO and industry scientists and researchers. We tested the training materials: 1) online to a group of 30 scientists who are currently doing systematic reviews for a World Health Organization (WHO)-International Labor Organization (ILO) joint project; 2) a group of 100 scientists at the Society of Toxicology (SOT) annual meeting in San Antonio, Texas; 3) a group of 75 scientists at the University of Michigan (online and in person); 4) a group of 40 US EPA employees representing virtually every Office within the Agency who are responsible for conducting and implementing systematic review methodology; 5) one scientist at Health Canada who the lead for a project to implement the Navigation Guide systematic review methodology for chemicals assessments at the Agency; and 6) one scientist at the Western Suburbs of Paris University Hospital working on a novel application of Navigation Guide --evaluating occupational health case reports. We have found that the demand for training in systematic review methods is quite high, as is the value of improving capabilities to assess the scientific evidence and come to evidence-based conclusions, which will lead to substantial benefits to protecting the public’s health. In addition to training the pipeline of scientists directly with our curriculum, we are providing expertise, insight, and feedback on the conduct of several systematic review projects. This includes: 1) a case study conducted at Texas A&M University on air pollution and adverse birth outcomes; 2) 12 case studies implemented in a joint project between WHO/ILO on occupational health-related topics; 3) a case study at the Western Suburbs of Paris University Hospital using Navigation Guide at the intersection of medical science and environmental health to evaluate occupational health case reports; and 4) a case study conducted at Touro University on the impact of financial conflicts of interest on study quality and author conclusions regarding toxicity. These collaborations and projects contribute to our long-term outcomes and overall objectives through the increasing the uptake of systematic and transparent methods for reaching evidence-based decisions among environmental health scientists, in both the academic and government arena.
Core B: Administrative Core
Internal Meetings and Communication
PEEC PIs and staff continue to meet monthly. The Center meetings include progress and data presentations for each project and the COTC and consist of a mix of in-person meetings, webinars and quarterly retreats.
The Administrative Core (Core B) was allotted time at each meeting to address program related topics such as Quality Assurance, Children’s Environmental Health Center meetings, External Advisory Committee meeting preparation and to distribute other administrative information to PIs and Staff.
The center is now using UCSF Box, a secure web-based document sharing site, as our project management hub for distributing internal materials such as slides for presentations, Center supporting art, Center descriptions, and the Center one-pager, among other materials.
We held a successful PEEC Retreat with all collaborators on June 20, 2017 to discuss progress and future goals, including leveraging findings between projects to formulate new research questions.
Children’s Environmental Health Center Annual Meeting.
On October 25 & 26 2017, 11 collaborators of the PEEC attended the EPA/NIEHS Children’s Centers Annual Meeting for which Dr. Tracey Woodruff was a plenary speaker. Five of these attendees also participated in the independent COTC meeting.
External Committee and EAC Meeting
The PEEC External Advisory Committee (EAC) held three project-based meetings in 2018. .
Project 1 & 2 held a joint meeting with three EAC members on May 29, 2018. The goal of this meeting was to discuss progress and next steps for Projects 1 & 2 in the final year of funding, specifically pertaining to evaluating biological pathways and endpoints of maternal/fetal chemical exposures.
The COTC met with EAC members on February 27, 2018 with two EAC members. The goal of the COTC meeting was two-fold: 1) to share accomplishments (and challenges) of the Clinical Outreach and Translation Core from these past 5 years and 2) to benefit from expertise and feedback in solidifying our “niche” and goals for the next 5-10 years.
During each EAC meetings, the projects and the COTC delivered a comprehensive presentation to bring attention to project accomplishments, current obstacles, and future directions, which was followed by a lengthy discussion with EAC members to advise project leads on changes that could be made in the future, and suggestions for possible follow-up grants based on the results of this work.
Future Activities:
Research Project I: Modeling the Effects of EDCs on Early Stages of Human Placental Development:
We will finalize the final proof which we expect to receive in September of 2018. We will write-up the analyses of the data that we have obtained so far on the transcriptome and epigenome in BDE-47 exposed and control CTBs. In independent cultures, we will continue to confirm and interrogate DE targets due to PBDE exposures on molecular levels in a dose-dependent manner. Examples of targets include MMP1 and PLAC4, in which we have interrogated the dose-response relationship of using qRT-PCR or immunoblot. We will continue to pursue other targets of interest using these methodologies. Using our initial methylation data analyses, we plan to conduct focused assessments of promoter regions of genes significantly altered by BDE-47 to identify potential altered epigenetic markers. We will summarize these findings and use this information to inform the design of future experiments. As we finalize and coalesce these datasets, we will select targets on which the functional analyses will concentrate for Aim 3. With supplemental funds, proteomic analyses of BDE-47 and PFOA are also underway. Therefore, we will analyze these data in comparison with transcriptomic/methylation datasets, and expand our targeted studies to include molecules altered by BDE- 47 and/or PFOA. We plan to submit a manuscript which describes the effects of BDE-47 in the human primary CTB model with a focus on the transcriptomic alterations.
Research Project II: Mid-Gestational Exposure to EDCs and Effects on Placental Development:
Placental biomarkers show some promise as indicators of PBDE exposure but we will continue to examine the relationship between PBDE levels, placental biomarkers, and morphological endpoints in the year following completion of project 2. We will also perform statistical analyses to determine how well serum PBDE levels represent placental levels and will continue to assess additional potential biomarkers for further study in future analyses. We will analyze PFAS data in maternal serum and we also plan to develop potency-based and data driven approaches for combined PBDE and PFAS exposures in the coming year. Finally, we will continue with data analysis and manuscript preparation from project 2 beyond the project period.
Research Project III: Effects of EDCs and Chronic Psychosocial Stress of Fetal Growth
We plan to finalize sample analysis for PBDEs, PFAS, CRH and telomeres by the end of the year, and meanwhile we are continuing with data analysis and journal submissions, which we expect to complete by May of 2019.
Core A: Community Outreach and Translation Core (COTC)
Our next step is to implement the content we have developed for the 10 syllabus topics, which we plan to begin in fall 2018. To be successful we will need the support and endorsement of both the faculty overseeing their respective area of LifeStages (Preconception/reproductive health, Pediatrics, and Geriatrics) as well as the lecturers of each course. To this end, we have the support and endorsement of Dr. Naomi Stotland, our colleague who oversees the Preconception/Reproductive health section of LifeStages medical school curriculum, as she has also been our champion and advocate for greater integration of environmental health in the medical education curriculum. We have also recently garnered the support of Dr. Patrick Newman, the faculty member overseeing the Pediatrics element of LifeStages.
We are thrilled to report that we were recently invited to present our environmental health educational work on June 25, 2018 to the UCSF Medical Student Education “Topic Steward” Committee, for consideration of environmental health as a topic to be strategically woven throughout all 4 years of our medical student education. The “Topic Steward” Committee is a new component of the Bridges Medical Education curriculum. Their charge is to identify where and when critical and pervasive topics (i.e., topics that can generally apply to all life stages, body systems, diseases, etc.) are taught throughout the entire medical education curriculum. As a new committee, they are still evolving a process and governance structure. The committee seemed agree that environmental health was an important topic that should be holistically included in the curriculum, and that their next step would be to discuss how to make this happen. As our presentation just occurred (and as of this writing) we have not yet had a follow up conversation. However we believe this opportunity was still a significant step in institutionalizing the uptake of environmental health throughout UCSF. We look forward to update you on the outcome of this meeting in our next report.
Our team has significantly sought to increase collaborations with faculty from other UCSF Schools and departments. Recent examples include collaborating with the Pediatric Environmental Health Specialty Unit (PEHSU) to create a model for the educational modules we are creating for the LifeStages syllabus and collaborating with Occupational and Environmental Medicine to explore environmental health education and training for practicing clinicians in the Bayview. We have seen a great deal of synergy and new, emerging opportunities for collaboration and have recently initiated monthly meetings with our team and colleagues from Nursing, the PEHSU, Occupational and Environmental Medicine, Sustainability, and Global Health. We believe that casting a wider net to expand our collaborative work together will only accelerate our goal of truly institutionalizing environmental health throughout UCSF. In collaboration with colleagues in UCSF’s Occupational and Environmental Medicine and the Southeast Clinic Patient Advisory Group, we are exploring the creation and implementation of environmental health trainings, including CME, for clinicians and staff at the clinic. The Southeast clinic serves the Bayview, an underserved San Francisco community with significant socioeconomic and health disparities, which is also a USEPA designated Superfund site. We have at least three more presentations upcoming to advance the conversation on this issue: (1) on our review of current methods to evaluate cumulative risk at the joint meeting of the International Society for Exposure Science and International Society for Environmental Epidemiology in August 2018; (2) at the University of California exposome and metabolic health symposium in Sept 2018, hosted at UCSF, which explores the big question “How do our social, psychological and physical environments create metabolic disease?”; and (3) at the NIEHS/ EPA Children’s Centers Annual Meeting in Oct 2018.
Core B: Administrative Core
We will continue holding monthly meetings and retreats in the coming year, with a focus on data dissemination, communications, and publications.
The Center will continue to engage program officers and send them any manuscripts that are produced within the upcoming project period.
Center PIs will continue to engage trainees and provide them with career-development opportunities.
Journal Articles: 48 Displayed | Download in RIS Format
Other center views: | All 77 publications | 54 publications in selected types | All 48 journal articles |
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Abrahamsson D, Park J, Singh R, Sirota M, Woodruff T. Applications of Machine Learning to In Silico Quantification o Chemicals without Analytical Standards. Journal of Chemical Information and Modeling 2020;60(6):2718-2727. |
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Abrahamsson D, Siddharth A, Young T, Sirota M, Park J, Martin J, Woodruff T. In Silico Structure Predictions for Non-targeted Analysis: From Physicochemical Properties to Molecular Structures. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMOTY 2022;33(7):1134-1147 |
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Abrahamsson D, Brueck C, Prasse C, Lambropoulou D, Koronaiou L, Wang M, Park J, Woodruff T. Extracting Structural Information from Physicochemical Property Measurements Using Machine Learning-A New Approach for Structure Elucidation in Non-targeted Analysis. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2023;27(40):14827-14838 |
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Bland G, Abrahamsson D, Wang M, Zlatnik M, Morello-Frosch R, Park J, Sirota M, Woodruff T. Exploring applications of non-targeted analysis in the characterization of the prenatal exposome. SCIENCE OF THE TOTAL ENVRIONMENT 2023;912(169458) |
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Casey JA, Karasek D, Ogburn, EL, Goin DE, Dang K, Braveman PA, Morello-Frosch R. Coal and oil power plant retirements in California:association with reduced preterm birth among populations nearby. American Journal of Epidemiology 2018;187(8):1586-1594. |
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Casey JA, Gemmill A, Karasek D, Ogburn, EL, Goin DE, Morello-Frosch R. Increase in fertility following coal and oil power plant retirements in California. Environmental Health 2018;17(1):44 (10 pp.). |
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Di Renzo GC, Conry JA, Blake J, DeFrancesco MS, DeNicola N, Martin Jr. JN, McCue KA, Richmond D, Shah A, Sutton P, Woodruff TJ, van der Poel SZ, Giudice LC. International Federation of Gynecology and Obstetrics opinion on reproductive health impacts of exposure to toxic environmental chemicals. International Journal of Gynaecology and Obstetrics 2015;131(3):219-225. |
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Gerona RR, Pan J, Zota AR, Schwartz JM, Friesen M, Taylor JA, Hunt PA, Woodruff TJ. Direct measurement of bisphenol A (BPA), BPA glucuronide and BPA sulfate in a diverse and low-income population of pregnant women reveals high exposure, with potential implications for previous exposure estimates: a cross-sectional study. Environmental Health 2016;15:50 (14 pp.). |
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Gerona RR, Schwartz JM, Pan J, Friesen MM, Lin T, Woodruff TJ. Suspect screening of maternal serum to identify new environmental chemical biomonitoring targets using liquid chromatography-quadrupole time-of-flight mass spectrometry. Journal of Exposure Science & Environmental Epidemiology 2018;28(2):101-108. |
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Goin D, Abrahamsson D, Wang M, Jiang T, Park J, Sirota M, Morello-Frosch R, DeMicco E, Zlatnik M, Woodruff T. Disparities in chemical exposures among pregnant women and neonates by socioeconomic and demographic characteristics:A nontargeted approach. ENVIRONMENTAL RESEARCH 2022;215(1):114158. |
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Goin D, Abrhamsson D, Wang M, Park J, Sirota M, Morello-Frosch R, DeMicco E, Trowbridge J, Augt L, O'Connell S, Ladella S, Zlatnik M, Woodruff T. Investigating geographic differences in environmental chemical exposures in maternal and cord sera using non-targeted screening and silicone wristbands in California. JOURNAL OF EXPOSURE SCIENCE AND ENVIRONMENTAL EPIDEMIOLOGY 2022;. |
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Huang H, Wang A, Morello-Frosch R, Lam J, Sirota M, Padula A, Woodruff TJ. Cumulative risk and impact modeling on environmental chemical and social stressors. Current Environmental Health Reports 2018;5(1):88-99. |
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Johnson PI, Sutton P, Atchley DS, Koustas E, Lam J, Sen S, Robinson KA, Axelrad DA, Woodruff TJ. The Navigation Guide—evidence-based medicine meets environmental health: systematic review of human evidence for PFOA effects on fetal growth. Environmental Health Perspectives 2014;122(10):1028-1039. |
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Johnson PI, Koustas E, Vesterinen HM, Sutton P, Atchley DS, Kim AN, Campbell M, Donald JM, Sen S, Bero L, Zeise L, Woodruff TJ. Application of the Navigation Guide systematic review methodology to the evidence for developmental and reproductive toxicity of triclosan. Environment International 2016;92-93:716-728. |
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Koustas E, Lam J, Sutton P, Johnson PI, Atchley DS, Sen S, Robinson KA, Axelrad DA, Woodruff TJ. The Navigation Guide—evidence-based medicine meets environmental health:systematic review of nonhuman evidence for PFOA effects on fetal growth. Environmental Health Perspectives 2014;122(10):1015-1027. |
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Lam J, Koustas E, Sutton P, Johnson PI, Atchley DS, Sen S, Robinson KA, Axelrad DA, Woodruff TJ. The Navigation Guide—evidence-based medicine meets environmental health:integration of animal and human evidence for PFOA effects on fetal growth. Environmental Health Perspectives 2014;122(10):1040-1051. |
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Lam J, Lanphear BP, Bellinger D, Axelrad DA, McPartland J, Sutton P, Davidson L, Daniels N, Sen S, Woodruff TJ. Developmental PBDE exposure and IQ/ADHD in childhood: a systematic review and meta-analysis. Environmental Health Perspectives 2017;125(8):086001 (20 pp.). |
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Lam J, Kotas E, Sutton P, Padula A, Cabana M, Vesterinen H, Griffiths C, Dickie M, Daniels N, Whitaker E, Woodruff T. Exposure to formaldehyde and asthma outcomes:A systematic review, meta-analysis, and economic assessment. PLOS ONE 2021;16(3):e0248258. |
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Lam J, Sutton P, Kalkbrenner A, Windham G, Halladay A, Koustas E, Lawler C, Davidson L, Daniels N, Newschaffer C, Woodruff T. A Systematic Review and Meta-Analysis of Multiple Airborne Pollutants and Autism Spectrum Disorder. PLoS One. 2016 Sep 21;11(9):e0161851. doi:10.1371/journal.pone.0161851. PubMed PMID:27653281; PubMed Central PMCID:PMC5031428. |
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McHale CM, Osborne G, Morello-Frosch R, Salmon AG, Sandy MS, Solomon G, Zhang L, Smith MT, Zeise L. Assessing health risks from multiple environmental stressors: moving from G×E to I×E. Mutation Research 2018;775:11-20. |
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Morello-Frosch R, Cushing LJ, Jesdale BM, Schwartz JM, Guo W, Guo T, Wang M, Harwani S, Petropoulou SE, Duong W, Park J-S, Petreas M, Gajek R, Alvaran J, She J, Dobraca D, Das R, Woodruff TJ. Environmental chemicals in an urban population of pregnant women and their newborns from San Francisco. Environmental Science & Technology 2016;50(22):12464-12472. |
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Morgan RL, Thayer KA, Bero L, Bruce N, Falck-Ytter Y, Ghersi D, Guyatt G, Hooijmans C, Langendam M, Mandrioli D, Mustafa RA, Rehfuess EA, Rooney AA, Shea B, Silbergeld EK, Sutton P, Wolfe MS, Woodruff TJ, Verbeek JH, Holloway AC, Santesso N, Schunemann HJ. GRADE: assessing the quality of evidence in environmental and occupational health. Environment International 2016;92-93:611-616. |
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Parry E, Zota AR, Park J-S, Woodruff TJ. Polybrominated diphenyl ethers (PBDEs) and hydroxylated PBDE metabolites (OH-PBDEs): a six-year temporal trend in Northern California pregnant women. Chemosphere 2018;195-777-783. |
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Pelch K, Reade A, Kwiatkowski C, Merced-Nieves F, Cavalier H, Schultz K, Wolffe T, Varshavsky J. The PFAS-Tox Database:A systematic evidence map of health studies on 29 per-and polyfluoroalkyl substances. ENVIRONMENTAL INTERNATIONAL 2022;167(107408). |
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Roadmap Epigenomics Consortium, Kundaje A, Meuleman W, Ernst J, Bilenky M, Yen A, Heravi-Moussavi A, Kheradpour P, Zhang Z, Wang J, Ziller MJ, Amin V, Whitaker JW, Schultz MD, Ward LD, Sarkar A, Quon G, Sandstrom RS, Eaton ML, Wu YC, Pfenning AR, Wang X, Claussnitzer M, Liu Y, Coarfa C, Harris RA, Shoresh N, Epstein CB, Gjoneska E, Leung D, Xie W, Hawkins RD, Lister R, Hong C, Gascard P, Mungall AJ, Moore R, Chuah E, Tam A, Canfield TK, Hansen RS, Kaul R, Sabo PJ, Bansal MS, Carles A, Dixon JR, Farh KH, Feizi X, Karlic R, Kim AR, Kulkarni A, Li D, Lowdon R, Elliott G, Mercer TR, Naph SJ, Onuchic V, Polak P, Rajagopal N, Ray P, Sallari RC, Siebenthall KT, Sinnott-Armstrong NA, Stevens M, Thurman RE, Wu J, Zhang B, Zhou X, Beaudet AE, Boyer LA, De Jager PL, Farnham PJ, Fisher SJ, Haussler D, Jones SJ, Li W, Marra MA, McManus MT, Sunyaev S, Thomson JA, Tlsty TD, Tsai LH, Wang W, Waterland RA, Zhang MQ, Chadwick LH, Bernstein BE, Costello JF, Ecker JR, Hirst M, Meissner A, Milosavljevic A, Ren B, Stamatoyannopoulos JA, Wang T, Kellis M. Integrative analysis of 111 reference human epigenomes. Nature 2015;518(7539):317-330. |
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Robinson JF, Kapidzic M, Gormley M, Ona K, Dent T, Seifikar H, Hamilton EG, Fisher SJ. Transcriptional dynamics of cultured human villous cytotrophoblasts. Endocrinology 2017;158(6):1581-1594. |
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Robinson J, Hamilton E, Lam J, Chen H, Woodruff T. Differences in cytochrome p450 enzyme expression and activity in fetal and adult tissues. PLACENTA 2020;100:35-44. |
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Solomon GM, Morello-Frosch R, Zeise L, Faust JB. Cumulative environmental impacts: science and policy to protect communities. Annual Review of Public Health 2016;37:83-96. |
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Stotland NE, Sutton P, Trowbridge J, Atchley DS, Conry J, Trasande L, Gerbert B, Charlesworth A, Woodruff TJ. Counseling patients on preventing prenatal environmental exposures--a mixed-methods study of obstetricians. PLoS ONE 2014;9(6):e98771 (7 pp.). |
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Sutton PM, Giudice LC, Woodruff TJ. Moving from awareness to action on preventing patient exposure to toxic environmental chemicals. American Journal of Obstetrics and Gynecology 2016;214(5):555-558. |
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Sutton, P, Woodruff, TJ, Conry, J, Giudice, LC. Exposure to toxic chemicals:reproductive health professionals speak about the first 1,000 days. San Francisco Medicine 2014;87(9):12-13. |
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Uyghurturk D, Goin D, Martinez-MierEA, Woodruff T, DenBesten P. Maternal and fetal exposures to fluoride during mid-gestation among pregnant women in northern California. ENVIRONMENTAL HEALTH 2020;19(1):38. |
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Vandenberg LN, Ågerstrand M, Beronius A, Beausoleil C, Bergman A, Bero LA, Bornehag CG, Boyer CS, Cooper GS, Cotgreave I, Gee D, Grandjean P, Guyton KZ, Hass U, Heindel JJ, Jobling S, Kidd KA, Kortenkamp A, Macleod MR, Martin OV, Norinder U, Scheringer M, Thayer KA, Toppari J, Whaley P, Woodruff TJ, Ruden C. A proposed framework for the systematic review and integrated assessment (SYRINA) of endocrine disrupting chemicals. Environmental Health 2016;15(1):74. |
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Vandenberg LN, Gerona RR, Kannan K, Taylor JA, van Breemen RB, Dickenson CA, Liao C, Yuan Y, Newbold RR, Padmanabhan V, Vom Saal FS, Woodruff TJ. Erratum to: A round robin approach to the analysis of bisphenol A (BPA) in human blood samples. Environmental Health 2016;15:43. |
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Varshavsky J, Zota A, Woodruff T. A Novel Method for Calculating Potency-Weighted Cumulative Phthalates Exposure with Implications for Identifying Racial/Ethnic Disparities among Reproductive-Aged Women in NHANES 2001-2012. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2016;5(19):10616-10624. |
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Varshavsky J, Morello-Frosch R, Woodruff T, Zota A. Dietary sources of cumulative phthalates exposure among the general population in NHANES 2005-2014. ENVIRONMENT INTERNATIONAL 2018;115:417-429. |
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Varshavsky J, Morello-Frosch R, Harwani S, Snider M, Petropoulou S, Park J, Petras M, Reynolda P, Nguyen T, Quach T. A Pilot Biomonitoring Study of Cumulative Phthalates Exposure among Vietnamese American Nail Salon Workers. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2020;17(1). |
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Varshavsky J, Smith A, Wang A, Hom E, Izano M, Huang H, Padula A, Woodruff T. Heightened susceptibility:A review of how pregnancy and chemical exposures influence maternal health. Reproductive Toxicology 2020;92(SI):14-56. |
R835433 (Final) R835643 (Final) |
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Vesterinen HM, Johnson PI, Koustas E, Lam J, Sutton P, Woodruff TJ. In support of EHP's proposal to adopt the ARRIVE guidelines. Environmental Health Perspectives 2013;121(11‐12):A325. |
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Vesterinen HM, Morello-Frosch R, Sen S, Zeise L, Woodruff TJ. Cumulative effects of prenatal-exposure to exogenous chemicals and psychosocial stress on fetal growth: systematic-review of the human and animal evidence. PLoS One 2017;12(7):e0176331 (29 pp.). |
R835433 (2017) R835433 (Final) |
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Wang A, Padula A, Sirota M, Woodruff TJ. Environmental influences on reproductive health: the importance of chemical exposures. Fertility and Sterility 2016;106(4):905-929. |
R835433 (2016) R835433 (2017) R835433 (Final) R835643 (2016) R835643 (2017) |
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Wang A, Gerona RR, Schwartz JM, Lin T, Sirota M, Morello-Frosch R, Woodruff TJ. A suspect screening method for characterizing multiple chemical exposures among a demographically diverse population of pregnant women in San Francisco. Environmental Health Perspectives 2018;126(7):077009 (13 pp.). |
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Woodruff TJ, Sutton P. The Navigation Guide systematic review methodology: a rigorous and transparent method for translating environmental health science into better health outcomes. Environmental Health Perspectives 2014;122(10):1007-1014. |
R835433 (2014) R835433 (Final) |
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Zota AR, Linderholm L, Park JS, Petreas M, Guo T, Privalsky ML, Zoeller RT, Woodruff TJ. Temporal comparison of PBDEs, OH-PBDEs, PCBs, and OH-PCBs in the serum of second trimester pregnant women recruited from San Francisco General Hospital, California. Environmental Science & Technology 2013;47(20):11776-11784. |
R835433 (2017) R835433 (Final) |
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Zota AR, Mitro SD, Robinson JF, Hamilton EG, Park JS, Parry E, Zoeller RT, Woodruff TJ. Polybrominated diphenyl ether (PBDEs) and hydroxylated PBDE metabolites (OH-PBDEs) in maternal and fetal tissues, and associations with fetal cytochrome P450 gene expression. Environment International 2018;112:269-278. |
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Zota A, Mitro S, Robinson J, Hamilton E, Park J, Parry E, Zoeller R, Woodruff J. Polybrominated diphenyl ethers PBDEs and hydroxylated PBDE metabolites OH-PBDEs in maternal and fetal tissues, and associations with fetal cytochrome P450 gene expression. ENVIRONMENT INTERNATIONAL 2018;112:269-278. |
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Morello-Frosch R, Cushing LJ, Jesdale BM, Schwartz JM, Guo W, Guo T, Wang M, Harwani S, Syrago-Petropoulou SSE, Duong W, Park J-S, Petreas M, Gajek R, Alvaran J, She J, Dobraca D, Das R, Woodruff TJ (2016) Environmental Chemicals in an Urban Population of Pregnant Women and their Newborns from San Francisco. Environ Sci and Technol DOI:10.1021/acs.est.6b03492. |
R835433 (2016) |
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Johnson PI, Sutton P, Koustas E, Vesterinen HM, Woodruff TJ. Response to correspondence by Heather Lynch, Julie Goodman and Nancy Beck Re:"Application of the Navigation Guide systematic review methodology to the evidence for developmental and reproductive toxicity of triclosan". Environ Int. 2017 Feb 21. pii:S0160-4120(17)30231-3. doi:10.1016/j.envint.2017.02.007. [Epub ahead of print] PubMed PMID:28236502. |
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Relevant Websites:
UCSF Program on Reproductive Health and the Environment Exit Exit
Progress and Final Reports:
Original AbstractThe perspectives, information and conclusions conveyed in research project abstracts, progress reports, final reports, journal abstracts and journal publications convey the viewpoints of the principal investigator and may not represent the views and policies of ORD and EPA. Conclusions drawn by the principal investigators have not been reviewed by the Agency.
Project Research Results
- Final Report
- 2016 Progress Report
- 2015 Progress Report
- 2014 Progress Report
- 2013 Progress Report
- Original Abstract
48 journal articles for this center