Science Inventory

Comparison of Gull Feces-specific Assays Targeting the 16S rRNA Gene of Catellicoccus Marimammalium and Streptococcus spp.

Citation:

RYU, H., J. F. Griffith, I. U. Khan, S. Hill, T. A. Edge, C. Toledo-Hernandez, J. Gonzalez-Nieves, AND J. W. SANTO-DOMINGO. Comparison of Gull Feces-specific Assays Targeting the 16S rRNA Gene of Catellicoccus Marimammalium and Streptococcus spp. APPLIED AND ENVIRONMENTAL MICROBIOLOGY. American Society for Microbiology, Washington, DC, 78(6):1909-1916, (2012).

Impact/Purpose:

To inform the public.

Description:

Two novel gull-specific qPCR assays were developed using 16S rRNA gene sequences from gull fecal clone libraries: a SYBR-green-based assay targeting Streptococcus spp. (i.e., gull3) and a TaqMan qPCR assay targeting Catellicoccus marimammalium (i.e., gull4). The main objectives of this study were to compare the host specificity of the existing gull-specific SYBR green C. marimammalium qPCR assay (i.e., gull2) with that of the new markers, and to examine the presence of the three gull markers in environmental water samples from different geographic locations. Of the 255 gull fecal samples tested, more than 86% were positive for the gull2 and gull4 assays, whereas only 28% were positive with the gull3 assay. Relatively low prevalence and abundance of tested gull markers were observed in fecal samples from six non-avian species (n=180), whereas the assays cross-reacted to some extent with other (non-gull) avian fecal samples. The gull3 assay was positive against fecal samples from 11 of 15 avian species including gull, suggesting that the gull3 assay has a potential to be a general avian marker. Of the presumed gull-impacted water samples (n=349), 86%, 59%, and 91% were positive for the gull2, the gull3, and the gull4 assays, respectively. Approximately 5% of 239 non-gull impacted waters were positive with the gull2 and the gull4 assays, whereas 21% were positive for the gull3 assay. While the relatively high occurrence of gull markers in waters impacted by gull feces suggests that these assays could be used in environmental monitoring studies, the data also suggest that multiple avian-specific assays will be needed to accurately assess the contribution of different avian sources in recreational waters.

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Record Details:

Record Type: DOCUMENT (JOURNAL/PEER REVIEWED JOURNAL)
Product Published Date: 03/01/2012
Record Last Revised: 03/09/2012
OMB Category: Other
Record ID: 238452

Organization:

U.S. ENVIRONMENTAL PROTECTION AGENCY

OFFICE OF RESEARCH AND DEVELOPMENT

NATIONAL RISK MANAGEMENT RESEARCH LABORATORY

WATER SUPPLY AND WATER RESOURCES DIVISION

MICROBIAL CONTAMINANTS CONTROL BRANCH