Karmaus, A., P. Kothiya, S. Watford, R. Thomas, AND M. Martin. Customizing the Connectivity Map Approach for Functional Evaluation in Toxicogenomics Studies (SOT). Presented at SOT National Meeting, Baltimore, MD, March 13 - 16, 2017. https://doi.org/10.23645/epacomptox.5176657

Judson, R., K. Houck, M. Martin, A. Richard, T. Knudsen, I. Shah, S. Little, J. Wambaugh, Woodrow Setzer, P. Kothiya, J. Phuong, D. Filer, D. Smith, D. Reif, D. Rotroff, N. Kleinstreuer, N. Sipes, M. Xia, R. Huang, K. Crofton, AND R. Thomas. Analysis of the Effects of Cell Stress and Cytotoxicity on In Vitro Assay Activity Across a Diverse Chemical and Assay Space. TOXICOLOGICAL SCIENCES. Society of Toxicology, RESTON, VA, 152(2):323-339, (2016).

Thomas, R., A. Karmaus, P. Kothiya, AND M. Martin. Evaluation of sequencing approaches for high-throughput toxicogenomics (SOT). Presented at Society of Toxicology 55th Annual Meeting, New Orleans, LA, March 13 - 17, 2016. https://doi.org/10.23645/epacomptox.5155975

Palmer, J., T. Knudsen, L. Egnash, P. Kothiya, K. Houck, AND B. Donley. Human Pluripotent Stem Cell-Based Assay Predicts Developmental Toxicity Potential of ToxCast Chemicals (ACT meeting). Presented at American College of Toxicology, Baltimore, MD, November 06 - 09, 2016. https://doi.org/10.23645/epacomptox.5181325

Knudsen, T., P. Kothiya, AND K. Houck. Toxcast Profiling in a Human Stem Cell Assay for Developmental Toxicity (SOT). Presented at Society of Toxicology Annual Meeting, New Orleans, LA, March 13 - 17, 2016. https://doi.org/10.23645/epacomptox.5155729

Filer, Dayne L., P. Kothiya, R. Woodrow Setzer, Richard S. Judson, AND Matthew T. Martin. tcpl: The ToxCast Pipeline for High-Throughput Screening Data. BIOINFORMATICS. Oxford University Press, Cary, NC, , 1-3, (2016).

Knudsen, T. B., A. M. Richard, P. G. Kothiya, R. S. Judson, K. A. Houck, K. C. Crofton, R. S. Thomas, S. Little, E. S. Hunter, N. C. Baker, C. K. M. Leung, J. Palmer, A. Smith, M. Colwell, P. West, R. Burrier, AND L. Egnash. Evaluation of 1066 ToxCast Chemicals in a human stem cell assay for developmental toxicity (SOT). Presented at Society of Toxicology, San Diego, CA, March 21 - 26, 2015. https://doi.org/10.23645/epacomptox.5178703

Franzosa, J., J. Jack, P. Kothiya, D. Filer, J. Liu, J. Bonzo, S. Ferguson, I. Shah, A. Richard, R. Thomas, J. Wambaugh, AND K. Houck. Evaluation of In Vitro Biotransformation Using HepaRG Cells to Improve High-Throughput Chemical Hazard Prediction: A Toxicogenomics Analysis (SOT). Presented at 2015 Annual SOT Meeting, San Diego, CA, March 22 - 26, 2015. https://doi.org/10.23645/epacomptox.5178868

Kothiya, P., J. Phuong, AND M. Martin. ToxCast Assay Network (TCAN) Viewer: A Visualization Tool for High-throughput Assay Chemical Data (SOT). Presented at Society of Toxicology, San Diego, CA, March 22 - 26, 2015. https://doi.org/10.23645/epacomptox.5178724

Houck, K., S. Mosher, S. Frady, J. Liu, J. Phuong, D. Filer, R. Judson, M. Martin, J. Wambaugh, P. Kothiya, J. Franzosa, AND S. Padilla. Considerations in Use of the EPA’s ToxCast Data for Environmental Toxicology (SETAC). SETAC North America 35th Annual Meeting, Vancouver, BC, CANADA, November 09 - 13, 2014. https://doi.org/10.23645/epacomptox.5080033

Judson, R., K. Houck, M. Martin, A. Richard, T. Knudsen, N. Sipes, I. Shah, S. Little, J. Wambaugh, Woodrow Setzer, J. Rabinowitz, M. Linnenbrink, J. Franzosa, P. Kothiya, J. Phuong, K. McLaurin, D. Filer, M. Leung, C. Strope, L. Truong, R. Thomas, D. Smith, D. Reif, D. Rotroff, N. Kleinstreuer, M. Xia, AND R. Huang. In Vitro Screening of 1877 Industrial and Consumer Chemicals, Pesticides and Pharmaceuticals in up to 782 Assays: ToxCast Phase I and II (SOT). Presented at SOT, Pheonix, AZ, March 23 - 27, 2014. https://doi.org/10.23645/epacomptox.5193274

Kothiya, P., D. Reif, R. Judson, D. Filer, A. Richard, AND M. Martin. ToxCast Workflow: High-throughput screening assay data processing, analysis and management (SOT). Presented at SOT's 53rd Annual Meeting, Phoenix, AZ, March 24 - 27, 2014.

Sipes, N., M. Martin, P. Kothiya, D. Reif, R. Judson, A. Richard, K. Houck, D. Dix, R. Kavlock, AND T. Knudsen. Profiling 976 ToxCast chemicals across 331 enzymatic and receptor signaling assays. CHEMICAL RESEARCH IN TOXICOLOGY. American Chemical Society, Washington, DC, 26:878−895, (2013).