Office of Research and Development Publications

Records 1 to 25 of 278

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Ellison, C., K. Blackburn, P. Carmichael, H. Clewell, M. Cronin, B. Desprez, S. Escher, S. Fergusson, S. Gregoire, N. Hewitt, H. Hollnagel, M. Klaric, A. Patel, S. Salhi, A. Schepky, B. Schmitt, J. Wambaugh, AND A. Worth. Challenges in working towards an internal Threshold of Toxicological Concern (iTTC) for use in the safety assessment of cosmetics: Discussions from the Cosmetics Europe iTTC Working Group workshop. REGULATORY TOXICOLOGY AND PHARMACOLOGY. Elsevier Science Ltd, New York, NY, 103(1):63-72, (2019). <a href="https://doi.org/10.1016/j.yrtph.2019.01.016">https://doi.org/10.1016/j.yrtph.2019.01.016</a>
Wambaugh, J. Comment on: Dong et al. (2017) “Issues raised by the reference doses for perfluorooctonate sulfonate and perfluorooctanoic acid.”. ENVIRONMENT INTERNATIONAL. Elsevier B.V., Amsterdam, Netherlands, 121(2):1372-1374, (2018). <a href="https://doi.org/10.1016/j.envint.2018.10.048">https://doi.org/10.1016/j.envint.2018.10.048</a>
Helman, G., I. Shah, AND G. Patlewicz. Extending the Generalised Read-Across approach (GenRA): A systematic analysis of the impact of physicochemical property information on read-across performance. Computational Toxicology. Elsevier B.V., Amsterdam, Netherlands, 8:34-50, (2018). <a href="https://doi.org/10.1016/j.comtox.2018.07.001">https://doi.org/10.1016/j.comtox.2018.07.001</a>
Helman, G., I. Shah, A. Williams, J. Edwards, J. Dunne, AND G. Patlewicz. Generalised Read-Across (GenRA): A workflow implemented into the EPA CompTox Chemicals Dashboard. ALTEX. Society ALTEX Edition, Kuesnacht, Switzerland, 36(1):1-5, (2019). <a href="https://doi.org/10.14573/altex.1811292">https://doi.org/10.14573/altex.1811292</a>
Roberts, D. AND G. Patlewicz. Letter to the editor - misinterpretation of published work. Current Opinion in Toxicology. Elsevier BV, AMSTERDAM, Netherlands, 6:1-2, (2017).
Judson, R., K. Paul-Friedman, K. Houck, K. Mansouri, P. Browne, AND N. Kleinstreuer. New Approach Methods for Testing Chemicals for Endocrine Disruption Potential. Current Opinion in Toxicology. Elsevier BV, AMSTERDAM, Netherlands, 9:40-47, (2018). <a href="https://doi.org/10.1016/j.cotox.2018.10.002">https://doi.org/10.1016/j.cotox.2018.10.002</a>
Paini, A., J. Leonard, E. Joossens, J. Bessems, A. Desalegn, J. Dorne, J. Gosling, M. Heringa, M. Klaric, T. Kliment, N. Kramer, G. Loizou, J. Louisse, A. Lumen, J. Madden, E. Patterson, S. Proença, A. Punt, Woodrow Setzer, N. Suciu, J. Troutman, M. Yoon, A. Worth, AND C. Tan. Next generation physiologically based kinetic (NG-PBK) models in support of regulatory decision making. Computational Toxicology. Elsevier B.V., Amsterdam, Netherlands, 9:61-72, (2019). <a href="https://doi.org/10.1016/j.comtox.2018.11.002">https://doi.org/10.1016/j.comtox.2018.11.002</a>
Trisciuzzi, D., D. Alberga, K. Mansouri, R. Judson, E. Novellino, G. Mangiatordi, AND O. Nicolotti. Predictive structure-based toxicology approaches to assess the androgenic potential of chemicals. Journal of Chemical Information and Modeling. American Chemical Society, Washington, DC, 57(11):2874-2884, (2017). <a href="https://doi.org/10.1021/acs.jcim.7b00420">https://doi.org/10.1021/acs.jcim.7b00420</a>
Patlewicz, G., J. Wambaugh, S. Felter, T. Simon, AND R. Becker. Utilizing Threshold of Toxicological Concern (TTC) with High Throughput Exposure Predictions (HTE) as a Risk-Based Prioritization Approach for thousands of chemicals. Computational Toxicology. Elsevier B.V., Amsterdam, Netherlands, 7:58-67, (2018). <a href="https://doi.org/10.1016/j.comtox.2018.07.002">https://doi.org/10.1016/j.comtox.2018.07.002</a>
Stapleton, P., C. Wingard, T. Nurkiewicz, A. Holloway, J. Zelikoff, T. Knudsen, AND L. Rogers. Cardiopulmonary consequences of gestational toxicant exposure: symposium overview at the 56th Annual SOT Meeting, Baltimore, MD. REPRODUCTIVE TOXICOLOGY. Elsevier Science Ltd, New York, NY, 79(1):16-20, (2018). <a href="https://doi.org/10.1016/j.reprotox.2018.04.016">https://doi.org/10.1016/j.reprotox.2018.04.016</a>
Philips, J., D. Svoboda, A. Tandon, S. Patel, A. Sedykh, D. Mav, B. Kuo, C. Yauk, L. Yang, R. Thomas, Jeff Gift, Allen Davis, L. Olysyzk, F. Parham, T. Saddler, R. Shah, S. Auerbach, B. Merrick, AND R. Paules. BMDExpress 2: Enhanced transcriptomic dose-response analysis workflow. BIOINFORMATICS. Oxford University Press, Cary, NC, 35(10):1780-1782, (2019). <a href="https://doi.org/10.1093/bioinformatics/bty878">https://doi.org/10.1093/bioinformatics/bty878</a>
Wetmore, B., R. Clewell, B. Cholewa, B. Parks, S. Pendse, M. Black, K. Mansouri, S. Haider, E. Berg, R. Judson, K. Houck, M. Martin, H. Clewell III, M. Andersen, R. Thomas, AND P. McMullen. Assessing Bioactivity-Exposure Profiles of Fruits and Vegetables in the BioMAP Profiling System. TOXICOLOGY IN VITRO. Elsevier Science Ltd, New York, NY, 54:41-57, (2019). <a href="https://doi.org/10.1016/j.tiv.2018.09.006">https://doi.org/10.1016/j.tiv.2018.09.006</a>
Scialli, A., G. Daston, C. Chen, P. Coder, S. Euling, J. Foreman, A. Hoberman, J. Hui, T. Knudsen, S. Makris, L. Morford, A. Piersma, D. Stanislaus, AND K. Thompson. Rethinking Developmental Toxicity Testing: Evolution or Revolution? Birth Defects Research. John Wiley & Sons, Inc., Hoboken, NJ, 110(10):840-850, (2018). <a href="https://doi.org/10.1002/bdr2.1212">https://doi.org/10.1002/bdr2.1212</a>
McEachran, A., K. Mansouri, Chris Grulke, E. Schymanski, C. Ruttkies, AND A. Williams. “MS-Ready” structures for non-targeted high-resolution mass spectrometry screening studies. Journal of Cheminformatics. Springer, New York, NY, 10(45):1-16, (2018).
Roberts, D. AND G. Patlewicz. Non‐animal assessment of skin sensitization hazard: Is an integrated testing strategy needed, and if so what should be integrated? JOURNAL OF APPLIED TOXICOLOGY. John Wiley & Sons, Ltd., Indianapolis, IN, 38(1):41-50, (2017). <a href="https://doi.org/10.1002/jat.3479">https://doi.org/10.1002/jat.3479</a>
Baker, N., A. Boobis, L. Burgoon, E. Carney, R. Currie, E. Fritsche, T. Knudsen, M. Laffont, A. Piersma, A. Poole, S. Schneider, AND G. Daston. Building a Developmental Toxicity Ontology. BIRTH DEFECTS RESEARCH PART B: DEVELOPMENTAL AND REPRODUCTIVE TOXICOLOGY. John Wiley & Sons, Ltd., Indianapolis, IN, 110(6):502-518, (2018). <a href="https://doi.org/10.1002/bdr2.1189">https://doi.org/10.1002/bdr2.1189</a>
Watford, S., R. Grashow, V. De La Rosa, R. Rudel, K. Paul-Friedman, AND M. Martin. Novel application of normalized pointwise mutual information (NPMI) to mine biomedical literature for gene sets associated with disease: Use case in breast carcinogenesis. Computational Toxicology. Elsevier B.V., Amsterdam, Netherlands, 7:46-57, (2018). <a href="https://doi.org/10.1016/j.comtox.2018.06.003">https://doi.org/10.1016/j.comtox.2018.06.003</a>
Pupier, M., J. Nuzillard, J. Wist, N. Schlörer, S. Kuhn, M. Erdelyi, C. Steinbeck, A. Williams, C. Butts, T. Claridge, B. Mikhova, W. Robien, H. Dashti, H. Eghbalnia, C. Farès, C. Adam, P. Kessler, F. Moriaud, M. Elyashberg, D. Argyropoulos, M. Pérez, P. Giraudeau, R. Gil, P. Trevorrow, AND D. Jeannerat. NMReDATA, a standard to report the NMR assignment and parameters of organic compounds. Magnetic Resonance in Chemistry. John Wiley & Sons, Inc., Hoboken, NJ, 56(8):703-715, (2018). <a href="https://doi.org/10.1002/mrc.4737">https://doi.org/10.1002/mrc.4737</a>
Malloy, T., V. Zaunbrecher, E. Beryt, R. Judson, R. Tice, P. Allard, A. Blake, I. Cote, H. Godwin, L. Heine, P. Kerzic, J. Kostal, G. Marchant, J. McPartland, K. Moran, A. Nel, O. Ogunseitan, M. Rossi, K. Thayer, J. Tickner, M. Whittaker, AND K. Zarker. Advancing Alternatives Analysis: The Role of Predictive Toxicology in Selecting Safer Chemical Products and Processes. Integrated Environmental Assessment and Management. Allen Press, Inc., Lawrence, KS, 13(5):915-925, (2017). <a href="https://doi.org/10.1002/ieam.1923">https://doi.org/10.1002/ieam.1923</a>
Kuenemann, M., M. Szymczyk, Y. Chen, N. Sultana, D. Hinks, H. Freeman, A. Williams, D. Fourches, AND N. Vinueza. Weaver’s Historic Accessible Collection of Synthetic Dyes: A Cheminformatics Analysis. Chemical Science. RSC Publishing, Cambridge, Uk, (8):4334-4339, (2017). <a href="https://doi.org/10.1039/c7sc00567a">https://doi.org/10.1039/c7sc00567a</a>
Nguyen, E., W. Daly, N. Le, M. Farnoodian, D. Belair, M. Schwartz, C. Lebakken, G. Ananiev, M. Saghiri, T. Knudsen, N. Sheibani, AND W. Murphy. Versatile synthetic alternatives to Matrigel for vascular toxicity screening and stem cell expansion. Nature Communications. Nature Publishing Group, London, Uk, 1(0096):1-34, (2018). <a href="https://doi.org/10.1038/s41551-017-0096">https://doi.org/10.1038/s41551-017-0096</a>
Watt, Eric AND R. Judson. Uncertainty Quantification in ToxCast High Throughput Screening. PLoS Computational Biology. Public Library of Science, San Francisco, CA, 13(7):1-23, (2018). <a href="https://doi.org/10.1371/journal.pone.0196963">https://doi.org/10.1371/journal.pone.0196963</a>
Williams, A., L. Peck, AND S. Ekins. The New Alchemy: Online Networking, Data Sharing and Research Activity Distribution Tools for Scientists. F1000 Research. Faculty of 1000, London, Uk, (6):1315, (2017). <a href="https://doi.org/10.12688/f1000research.12185.1">https://doi.org/10.12688/f1000research.12185.1</a>
Hartung, T., R. FitzGerald, P. Jennings, G. Mirams, M. Peitsch, A. ostami-Hodjegan, I. Shah, M. Wilks, AND S. Sturla. Systems Toxicology: Real World Applications and Opportunities. CHEMICAL RESEARCH IN TOXICOLOGY. American Chemical Society, Washington, DC, 30(4):870-882, (2017). <a href="https://doi.org/10.1021/acs.chemrestox.7b00003">https://doi.org/10.1021/acs.chemrestox.7b00003</a>
Knudsen, T., B. Klieforth, AND W. Slikker. Programming Microphysiological Systems for Children’s Health Protection. Experimental Biology and Medicine. SAGE Publications, THOUSAND OAKS, CA, 242(16):1586-1592, (2017). <a href="https://doi.org/10.1177/1535370217717697">https://doi.org/10.1177/1535370217717697</a>
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