Office of Research and Development Publications

National Risk Management Research Laboratory (NRMRL) Research Publications

Records 1 to 25 of 53 records from ORD-NRMRL published between 10/07/2012 and 10/07/2017 from author Orin Shanks

Stachler, E., C. Kelty, Mano Sivaganesan, X. Li, K. Bibby, AND O. Shanks. Quantitative CrAssphage PCR Assays for Human Fecal Pollution Measurement. ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, 51(16):9146-9154, (2017). <a href="https://doi.org/10.1021/acs.est.7b02703">https://doi.org/10.1021/acs.est.7b02703</a>
SHANKS, O. C., L. PEED, M. SIVAGANESAN, R. A. HAUGLAND, AND E. C. CHERN. Human fecal source identification with real-time quantitative PCR. 2ndChapter 7, Paulsen I., Holmes A. (ed.), Environmental Microbiology, Methods in Molecular Biology Series. Humana Press Incorporated, Totowa, NJ, 1096:85-99, (2014).
McLellan, S. L., A. B. Boehm, AND O. C. SHANKS. Marine and Freshwater Fecal Indicators and Source Identification. 1Chapter 9, Phyllis Kanki, Jay Grimes (ed.), Infectious Diseases Selected Entries from the Encyclopedia of Sustainability Science and Technology. Springer, New York, NY, , 199-235, (2013).
Boehm, A., D. Wang, A. Ercumen, M. Shea, A. Harris, O. Shanks, C. Kelty, A. Ahmed, Z. Mahmud, B. Arnold, C. Chase, C. Kullman, R. Ahmed, J. Colford, Jr., S. Luby, AND A. Pickering. Occurrence of host-associated fecal markers on child hands, household soil, and drinking water in rural Bangladeshi households. Environmental Science & Technology Letters. American Chemical Society, Washington, DC, 3(11):393-398, (2016).
Li, X., Mano Sivaganesan, C. Kelty, A. Zimmer-Faust, Pat Clinton, J. Reichman, Y. Johnson, W. Matthews, S. Bailey, AND O. Shanks. Quantitative Real-Time PCR Fecal Source Identification in the Tillamook Basin (abstract). Presented at Water Microbiology Conference 2017, Chapel Hill, NC, May 15 - 19, 2017.
Li, X., L. peed, Mano Sivaganesan, C. Kelty, C. Neitch, AND O. Shanks. Simultaneous measurement of genetic fecal indicators in water column and periphyton biofilms in artificial streams - abstract. To be Presented at Water Microbiology Conference 2017, Chapel Hill, NC, May 15 - 19, 2017.
Shrestha, A., C. Kelty, Mano Sivaganesan, O. Shanks, AND S. Dorevitch. Examining trends in general fecal indicator bacteria and microbial source tracking genetic markers at non-point source impacted Chicago beaches. Presented at Water Microbiology Conference 2017, Chapel Hill, NC, May 15 - 19, 2017.
Shanks, O. Implementation of Molecular Human Fecal Source Identification Technologies. To be Presented at 2017 American Public Health Laboratory National Meeting, Providence, RI, June 11 - 14, 2017.
Wanjugi, P., Mano Sivaganesan, A. Korajkic, C. Kelty, B. McMinn, R. Ulrich, V. Harwood, AND O. Shanks. Differential Decomposition of Bacterial and Viral Fecal Indicators in Common Human Pollution Types. WATER RESEARCH. Elsevier Science Ltd, New York, NY, 105:591-601, (2016).
Green, H., J. Fisher, S. McLellan, M. Sogin, AND O. Shanks. Distributions of Bacterial Generalists among the Guts of Birds, Fish, and Mammals - abstract. Presented at International Symposium on Microbial Ecology, Montreal, CANADA, August 21 - 26, 2016.
Stachler, E., C. Kelty, K. Bibby, AND O. Shanks. Development of Cross-Assembly Phage PCR-Based Methods for Human Fecal Source Identification. Presented at Water Microbiology Conference, Chapel Hill, NC, May 17 - 19, 2016.
Shanks, O. Human Microbial Source Tracking with qPCR: Method Standardization Update and Research Activities. To be Presented at 19th Annual Laboratory Technical Information Group Meeting, Edison, NJ, May 04, 2016.
Cao, Y., Mano Sivaganesan, C. Kelty, D. Wang, A. Boehm, J. Griffith, S. Weisberg, AND O. Shanks. A human fecal contamination index for ranking impaired recreational watersusing the HF183 quantitative real-time PCR method. Presented at Water Microbiology Conference, UNC Water Institute, Chapel Hill, NC, May 17 - 19, 2016.
Wanjugi, P., Mano Sivaganesan, C. Kelty, A. Korajkic, E. Rhodes, B. McMinn, Mike Cyterski, K. Oshima, E. Stachler, A. Topper, L. Bertaux-Skeirik, J. Kinzelkman, M. Citriglia, F. Hsu, AND O. Shanks. Incidence of Somatic and F+ Coliphage at Three Great Lake Beaches. Water Microbiology Conference 2016, UNC Water Institute, Chapel Hill, NC, May 17 - 19, 2016.
Wanjugi, P., Mano Sivaganesan, C. Kelty, A. Korajkic, B. McMinn, R. Ulrich, V. Harwood, AND O. Shanks. Differential Decay of Bacterial and Viral Fecal Indicators in Common Human Pollution Sources. Presented at 2016 Recreational Waters Conference, New Orleans, LA, April 12 - 15, 2016.
Shanks, O., C. Kelty, R. Oshiro, Rich Haugland, T. Madi, L. Brooks, K. Field, AND Mano Sivaganesan. Data Acceptance Criteria for Standardized Human-Associated Fecal Source Identification Quantitative Real-Time PCR Methods. APPLIED AND ENVIRONMENTAL MICROBIOLOGY. American Society for Microbiology, Washington, DC, 82(9):2773-2782, (2016).
Boehm, A., J. Soller, AND O. Shanks. Human-associated fecal qPCR measurements and predicted risk of gastrointestinal illness in recreational waters contaminated with raw sewage. Presented at 2016 Recreational Waters Conference, New Orleans, LA, April 12 - 15, 2016.
Green, H., J. Fisher, S. McLellan, M. Sogin, AND O. Shanks. Identification of specialists and abundance-occupancy relationships among intestinal bacteria of Aves, Mammalia, and Actinopterygii. APPLIED AND ENVIRONMENTAL MICROBIOLOGY. American Society for Microbiology, Washington, DC, 82(5):1496-1503, (2016).
Wanjugi, P. AND O. Shanks. Assessment of Diffuse Sources of Human Fecal Pollution. Presented at Ohio Onsite Wastewater Annual Conference, Mt. Sterling, OH, January 12 - 14, 2016.
Shanks, O., H. Green, A. Korajkic, AND K. Field. Overview of Microbial Source Tracking Methods Targeting Human Fecal Pollution Sources. Chapter 3, Cindy H. Nakatsu, Robert V. Miller, Suresh D. Pillai (ed.), Manual of Environmental Microbiology, 4th Edition. American Society for Microbiology. ASM Press, Washington, DC, , 3.4.3-1 - 3.4.3-8, (2015).
Boehm, A., J. Soller, AND O. Shanks. Human-Associated Fecal Quantitative Polymerase Chain ReactionMeasurements and Simulated Risk of Gastrointestinal Illness in Recreational Waters Contaminated with Raw Sewage. Environmental Science & Technology Letters. American Chemical Society, Washington, DC, 2:270-275, (2015).
Fisher, J., A. Eren, H. Green, O. Shanks, H. Morrison, J. Vineis, M. Sogin, AND S. McLellan. Comparison of Sewage and Animal Fecal Microbiomes by using Oligotyping Reveals Potential Human Fecal Indicators in Multiple Taxonomic Groups. APPLIED AND ENVIRONMENTAL MICROBIOLOGY. American Society for Microbiology, Washington, DC, 81(20):7023-7033, (2015).
Wang, D., H. Green, O. Shanks, AND A. Boehm. New Performance Metrics for Quantitative Polymerase Chain Reaction-Based Microbial Source Tracking Methods. Environmental Science & Technology Letters. American Chemical Society, Washington, DC, 1(1):20-25, (2014).
Shanks, O. Fecal Source Identification: Method Standardization and Field Demonstrations. Presented at Laboratory Technical Information Group 2014 meeting, Cincinnati, OH, April 30, 2014.
Shanks, O. Biological and Microbial Aspects of Septic System Pollution: Fecal Source Identification of Septic System Pollution in Receiving Waters. Presented at 2015 ORD/OW Monthly Webinar Series, Cincinnati, OH, June 30, 2015.