Science Inventory

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Patlewicz, G., A. Richard, A. Williams, R. Judson, AND R. Thomas. Towards reproducible structure-based chemical categories for PFAS to inform and evaluate toxicity and toxicokinetic testing. Computational Toxicology. Elsevier B.V., Amsterdam, Netherlands, 24:100250, (2022). https://doi.org/10.1016/j.comtox.2022.100250

Feshuk, M., J. Brown, S. Davidson, L. Kolackowski, K. Dunham, R. Judson, AND K. Paul-Friedman. ToxCast’s invitroDB: Software and database enhancements to support continued integration and use of in vitro screening data. SETAC, Pittsburgh, PA, November 13 - 17, 2022. https://doi.org/10.23645/epacomptox.21411579

Judson, R. ToxValDB V9.2. U.S. Environmental Protection Agency, Washington, DC, 2022. https://doi.org/10.23645/epacomptox.20394501

Vallanat, B., R. Judson, D. Haggard, L. Taylor, B. Chambers, J. Bundy, I. Shah, J. Rogers, K. Paul-Friedman, J. Harrill, AND L. Everett. Utilization of transcriptomics data in use class based grouping and classification of chemicals in toxicity testing. Society of Toxicology 61st Annual Meeting and ToxExpo 2022, San Diego, CA, March 27 - April 01, 2022.

Foster, M., R. Judson, Woodrow Setzer, AND K. Paul-Friedman. Variability of organ-level effects in repeat dose animal studies. Society of Toxicology 61st Annual Meeting and ToxExpo 2022, San Diego/hybrid/virtual, California, March 27 - 31, 2022. https://doi.org/10.23645/epacomptox.19601434

Sheffield, T., J. Brown, S. Davidson-Fritz, K. Friedman, AND R. Judson. tcplfit2: an R-language general purpose concentration-response modeling package. BIOINFORMATICS. Oxford University Press, Cary, NC, 38(4):1157-1158, (2022). https://doi.org/10.1093/bioinformatics/btab779

Judson, R. A Proof-of-Concept Case Study Integrating Publicly Available Information to Screen Candidates for Chemical Prioritization under TSCA (APCRA). Accelerating the Pace of Chemical Risk Assessment (APCRA) meeting, NA, Virtual, October 14 - 15, 2021. https://doi.org/10.23645/epacomptox.17334350

Dawson, D., Chris Lau, P. Pradeep, R. Judson, R. Tornero-Velez, AND J. Wambaugh. A quantitative structure-activity relationship (QSAR) model to estimate serum half-lives of per- and polyfluoroalkyl substances (PFAS) in multiple species (SOT 2021). Society of Toxicology 2021 Virtual Annual meeting, Virtual, NC, March 12 - 26, 2021. https://doi.org/10.23645/epacomptox.14470734

Wambaugh, J., T. Barton-Maclaren, M. Beal, M. Devito, J. Dorne, S. Ferguson, M. Hughes, R. Judson, I. Moffat, A. Nong, A. Paini, K. Paul-Friedman, R. Thomas, AND B. Wetmore. APCRA Case Study:High Throughput Toxicokinetics for In Vitro-In Vivo Extrapolation. Accelerating the Pace of Chemical Risk Assessment (APCRA) meeting, Virtual, NC, October 14 - 15, 2021. https://doi.org/10.23645/epacomptox.16828510

Pradeep, P., R. Judson, D. DeMarini, Nagalakshmi Keshava, T. Martin, J. Dean, C. Gibbons, A. Simha, S. Warren, M. Gwinn, AND G. Patlewicz. An Evaluation of Existing QSAR Models and Structural Alerts and Development of New Ensemble Models for Genotoxicity Using a Newly Compiled Experimental Dataset. Computational Toxicology. Elsevier B.V., Amsterdam, Netherlands, 18:100167, (2021). https://doi.org/10.1016/j.comtox.2021.100167

Judson, R. Biosolids Pollutant Prioritization. National Biosolids meeting, virtual, NC, November 03 - 05, 2021. https://doi.org/10.23645/epacomptox.17203490

Wambaugh, J., N. Sipes, J. Arnot, T. Brown, D. Dawson, S. Davidson, M. Devito, J. DiBella, S. Ferguson, M. Goldsmith, Chris Grulke, R. Judson, M. Lawless, K. Mansouri, G. Patlewicz, E. Papa, P. Pradeep, A. Sangion, R. Sayre, R. Tornero-Velez, AND B. Wetmore. Collaborative Evaluation of In Silico Predictions for High Throughput Toxicokinetics. QSAR 2021 International Workshop on QSAR in Environmental and Health Sciences, Virtual, NC, June 07 - 10, 2021. https://doi.org/10.23645/epacomptox.15077418

Wambaugh, J., N. Sipes, J. Arnot, T. Brown, D. Dawson, S. Davidson, M. Devito, J. DiBella, S. Ferguson, R. Goldsmith, Chris Grulke, R. Judson, M. Lawless, K. Mansouri, G. Patlewicz, E. Papa, P. Pradeep, A. Sangion, R. Sayre, R. Tornero-Velez, AND B. Wetmore. Collaborative Evaluation of In Silico Predictions for High Throughput Toxicokinetics (QSAR). Workshop on (Quantitative) Structure-Activity Relationships in Environmental and Health Sciences, Virtual, NC, June 07 - 09, 2021. https://doi.org/10.23645/epacomptox.16554114

Karmaus, A., J. Hseih, R. Huang, K. Shockley, K. Paul-Friedman, R. Judson, W. Casey, N. Kleinstreuer, AND N. Sipes. Comparing and Interpreting Tox21 Data Analysis Approaches. 11th World Congress on Alternatives and Animal Use in the Life Sciences Virtual Conference, Virtual, NC, August 23 - September 02, 2021. https://doi.org/10.23645/epacomptox.19229838

Nyffeler, J., D. Haggard, C. Willis, Woodrow Setzer, R. Judson, K. Paul-Friedman, L. Everett, AND J. Harrill. Comparison of Approaches for Determining Bioactivity Hits from High-Dimensional Profiling Data. SLAS Discovery. SAGE Publications, THOUSAND OAKS, CA, 26(2):292-308, (2021). https://doi.org/10.1177/2472555220950245

Taylor, L. AND R. Judson. Cross-Partner Project 8: Automation of Reference Chemical Generation. Toxicology in the 21st Century, NA, Virtual Meeting, October 08, 2021. https://doi.org/10.23645/epacomptox.16828501

Haggard, D., T. Sheffield, J. Harrill, I. Shah, R. Judson, Woodrow Setzer, AND L. Everett. Determining Transcriptional Points of Departure Using a Whole Transcriptome Screening Assay. Midsouth Computational Biology & Bioinformatics Society (MCBIOS) and MAQC 2021 Joint Conference, Virtual, North Carolina, April 26 - 30, 2021. https://doi.org/10.23645/epacomptox.16899823

Shah, I., J. Harrill, L. Everett, AND R. Judson. Determining points of departure from multivariate experimental data. Presented at British Society for Toxicology (BTS) Annual Congress, Cardiff, Virtual, UK, April 12 - 15, 2021. https://doi.org/10.23645/epacomptox.19175489

Judson, R. EPA ER/AR Minimal Assay Testing Plan. Joint Research Centre (JRC) teleconference, RTP, North Carolina, December 06, 2021. https://doi.org/10.23645/epacomptox.19074170

Fantke, P., W. Chiu, L. Aylward, R. Judson, L. Huang, S. Jang, T. Gouin, L. Rhomberg, N. Aurisano, T. McKone, AND O. Jolliet. Exposure and Toxicity Characterization of Chemical Emissions and Chemicals in Products: Global Recommendations and Implementation in USEtox. INTERNATIONAL JOURNAL OF LIFE CYCLE ASSESSMENT. Ecomed Verlagsgesellschaft AG, Landsberg, Germany, 26(5):899-915, (2021). https://doi.org/10.1007/s11367-021-01889-y

Judson, R. High Throughput In Vitro Assays for Chemical Safety Evaluation. Advanced Cell Culture & Tissue Engineering lab course Presentation Carleton University Canada, Virtual, CANADA, March 19, 2021. https://doi.org/10.23645/epacomptox.16755007

Everett, L., J. Harrill, D. Haggard, J. Bundy, B. Vallanat, I. Shah, AND R. Judson. High-Throughput Chemical Safety Screening Using Targeted RNA-seq (ISMB 2021 Abstract). Intelligent Systems for Molecular Biology (ISMB), Virtual, Virtual, July 25 - 30, 2021. https://doi.org/10.23645/epacomptox.15036114

Harrill, J., L. Everett, D. Haggard, T. Sheffield, J. Bundy, C. Willis, R. Thomas, I. Shah, AND R. Judson. High-Throughput Transcriptomics Platform for Screening Environmental Chemicals. TOXICOLOGICAL SCIENCES. Society of Toxicology, RESTON, VA, 181(1):68-89, (2021). https://doi.org/10.1093/toxsci/kfab009

Judson, R. High-throughput In Vitro Profiling of Chemicals for Hazard Assessment. Istanbul University, 18th Winter School Istanbul University Genetics Students Club, Istanbul (virtual), TURKEY, March 28, 2021. https://doi.org/10.23645/epacomptox.14547570

Judson, R., I. Shah, L. Everett, D. Haggard, AND J. Harrill. High-throughput Transcriptomic Profiling of Chemicals for Risk Assessment Applications. Midsouth Computational Biology & Bioinformatics Society (MCBIOS) and MAQC 2021 Joint Conference, Virtual, NC, April 26 - 30, 2021. https://doi.org/10.23645/epacomptox.19317818