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Ryu, H., M. Elk, I. Khan, V. Harwood, M. Molina, T. Edge, AND J. Santodomingo. Comparison of two poultry litter qPCR assays targeting the 16S rRNA gene of Brevibacterium sp. WATER RESEARCH. Elsevier Science Ltd, New York, NY, 48(1):613-621, (2014).

Beaulieu, J., P. Mayer, S. Kaushal, M. Pennino, C. Arango, D. Balz, T. Canfield, C. Elonen, K. Fritz, B. Hill, H. Ryu, AND J. Santodomingo. Effects of Urban Stream Burial on Organic Matter Dynamics and Reach Scale Nitrate Retention. BIOGEOCHEMISTRY. Springer, New York, NY, 121(1):107-126, (2014).

BEAULIEU, J., P. MAYER, S. S. Kaushal, M. J. Pennino, C. P. Arango, D. A. Balz, T. J. CANFIELD, C. M. ELONEN, K. M. FRITZ, B. H. Hill, H. RYU, AND J. W. SANTO-DOMINGO. Effects of urban stream burial on organic matter dynamics and reach scale nitrate retention - final. BIOGEOCHEMISTRY. Springer, New York, NY, 121(1):107-126, (2014).

Grond, K., H. Ryu, A. Baker, J. Santodomingo, AND D. Buehler. Gastro-intestinal microbiota of two migratory shorebird species during spring migration staging in Delaware Bay, USA. Journal of Field Ornithology. Springer Berlin - Heidelberg, , Germany, 155(4):969-977, (2014).

Ryu, H., K. Grond, B. Verheijen, M. Elk, D. Buehler, AND J. Santodomingo. Intestinal Microbiota and Species Diversity of Campylobacter and Helicobacter spp. in Migrating Shorebirds in Delaware Bay. APPLIED AND ENVIRONMENTAL MICROBIOLOGY. American Society for Microbiology, Washington, DC, 80(6):1838-1847, (2014).

Soto-Giron, J., J. W. Santo-Domingo, H. Ryu, M. Elk, AND K. Konstantinidis. Metagenomic Analysis of Showerhead Biofilms from a Hospital in Ohio. Presented at ASM Annual Meeting, #1402, Boston, MA, May 17 - 20, 2014.

Wang, H., C. Proctor, M. Edwards, M. Pryor, J. Santodomingo, H. Ryu, A. Camper, A. Olson, AND A. Pruden. Microbial community response to chlorine conversion in a chloraminated drinking water distribution system. ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, 48(18):10624-10633, (2014).

Daniels, Q., H. Ryu, M. Elk, AND E. Alm. POTENTIAL FOR GULLS TO TRANSPORT BACTERIA FROM HUMAN WASTE SITES. Presented at ASM Annual Meeting, Session 141, Poster 1861, Boston, MA, May 17 - 20, 2014.

Gao, Y., H. Ryu, J. Santodomingo, AND H. Lee. Syntrophic interactions between H2-scavenging and anode-respiring bacteria can improve current density in microbial electrochemical cells. Bioresource Technology. Elsevier Online, New York, NY, 153:245-253, (2014).

Jent, J. R., H. Ryu, C. Toledo-Hernandez, J. Santo Domingo, AND L. Yeghiazarian. DETERMINING HOT SPOTS OF FECAL CONTAMINATION IN A TROPICAL WATERSHED BY COMBINING LAND-USE INFORMATION AND METEOROLOGICAL DATA WITH SOURCE-SPECIFIC ASSAYS. ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, 47(11):5794-5802, (2013).

Pitkanen, T., H. Ryu, M. Elk, A. Hokajarvi, S. Siponen, A. Vepsalainen, P. Rasanen, AND J. Santodomingo. Detection of fecal bacteria and source tracking identifiers in environmental waters using rRNA-based RT-qPCR and rDNA-based qPCR assays. ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, 47(23):13611-13620, (2013).

Ryu, H., M. Henson, M. Elk, C. Toledo-Hernandez, J. Griffith, D. Blackwood, R. Noble, M. Gourmelon, S. Glassmeyer, AND J. Santodomingo. Development of quantitative PCR assays targeting 16S rRNA gene of Enterococcus spp. and their application to the identification of Enterococcus species in environmental samples. APPLIED AND ENVIRONMENTAL MICROBIOLOGY. American Society for Microbiology, Washington, DC, 79(1):196-204, (2013).

Weigand, M. R., H. Ryu, L. Boczek, K. T. Konstantinidis, AND J. W. Santo Domingo. Draft Genome Sequence of Catellicoccus marimammalium, a Novel Species Commonly Found in Gull Feces. Genome Announcements. American Society for Microbiology, Washington, DC, 1(1):e00019-12, (2013).

Ebentier, D., K. Hanley, Y. Cao, B. Badgley, A. Boehm, J. Ervin, K. Goodwin, M. Gourmelon, J. Griffith, P. Holden, C. Kelty, S. Lozach, C. McGee, L. Peed, M. Raith, H. Ryu, M. Sadowsky, E. Scott, J. Santodomingo, A. Schriewer, C. Sinigalliano, O. Shanks, L. Van De Werfhorst, D. Wang, S. Wuertz, AND J. Jay. Evaluation of the repeatability and reproducibility of a suite of qPCR based microbial source tracking methods. WATER RESEARCH. Elsevier Science Ltd, New York, NY, 47(18):6839–6848, (2013).

Flynn, T. M., R. A. Sanford, H. RYU, C. M. Bethke, A. D. Devine, N. ASHBOLT, AND J. W. SANTO-DOMINGO. Functional Microbial Diversity Explains Groundwater Chemistry in a Pristine Aquifer. BMC Microbiology. BioMed Central Ltd, London, Uk, 13:146, (2013).

Sinigalliano, C., J. Ervin, L. Van De Werfhorst, B. Badgley, E. Balleste', J. Bartkowiak, A. Boehm, M. Byappanahalli, K. Goodwin, M. Gourmelon, J. Griffith, P. Holden, J. Jay, B. Layton, C. Lee, J. Lee, W. Meijer, R. Noble, M. Raith, H. Ryu, M. Sadowsky, A. Schriewer, D. Wang, D. Wanless, R. Whitman, S. Wuertz, AND J. Santodomingo. Multi-laboratory evaluations of the performance of Catellicoccus marimammalium PCR assays developed to target gull fecal sources. WATER RESEARCH. Elsevier Science Ltd, New York, NY, 47(18):6883–6896, (2013).

Toledo, C., H. Ryu, J. Gonzalez, E. Huertas, G. Toranzos, AND J. Santodomingo. Tracking the Primary Sources of Fecal Pollution in a Tropical Watershed in a One-Year Study. APPLIED AND ENVIRONMENTAL MICROBIOLOGY. American Society for Microbiology, Washington, DC, 79(5):1689-1696, (2013).

Santodomingo, J., V. Gomez-Alvarez, H. Ryu, A. Mondala, W. French, AND R. Hernandez. Characterization of fatty acid-producing wastewater microbial communities using next generation sequencing technologies. Presented at The 1st Waterloo International Conference of Sustainable Wastewater Treatment, Waterloo, ON, CANADA, August 08 - 09, 2012.

RYU, H., J. F. Griffith, I. U. Khan, S. Hill, T. A. Edge, C. Toledo-Hernandez, J. Gonzalez-Nieves, AND J. W. SANTO-DOMINGO. Comparison of Gull Feces-specific Assays Targeting the 16S rRNA Gene of Catellicoccus Marimammalium and Streptococcus spp. APPLIED AND ENVIRONMENTAL MICROBIOLOGY. American Society for Microbiology, Washington, DC, 78(6):1909-1916, (2012).

RYU, H., J. LU, J. Vogel, M. Elk, F. Chavez-Ramirez, N. ASHBOLT, AND J. W. SANTO-DOMINGO. Development and Evaluation of a Quantitative PCR Assay Targeting Sandhill Crane (Grus canadensis) Fecal Pollution . APPLIED AND ENVIRONMENTAL MICROBIOLOGY. American Society for Microbiology, Washington, DC, 78(12):4338-4345, (2012).

RYU, H., M. Henson, M. Elk, S. GLASSMEYER, AND J. W. SANTO-DOMINGO. Development and evaluation of 16S rRNA gene targeting Enterococcus genus- and species-specific assays . Presented at 112th American Society for Microbiology General Meeting, San Francisco, CA, June 16 - 19, 2012.

Mondala, A. H., R. Hernandez, T. French, L. McFarland, J. W. SANTO-DOMINGO, M. MECKES, H. RYU, AND I. Brandon. Enhanced Lipid and Biodiesel Production from Glucose-Fed Activated Sludge: Kinetics an Microbial Community Analysis. doi: 10.1002/aic.12655 (ed.), AMERICAN INSTITUTE OF CHEMICAL ENGINEERS JOURNAL. American Institute of Chemical Engineers, New York, NY, 58(4):1279-1290, (2012).

SANTO-DOMINGO, J. W., M. E. SCHOEN, N. ASHBOLT, AND H. RYU. Using qPCR for Water Microbial Risk Assessments. Chapter 7, M. Filion (ed.), Quantitative Readl-time PCR in Applied Microbiology, ISBN:9781908230010. Caister Academic Press, Norwich, Uk, , ,, (2012).

RYU, H., T. TRAN, M. W. WARE, B. Iker, S. GRIFFIN, A. EGOROV, T. Edge, N. Newmann, E. N. VILLEGAS, AND J. W. SANTO-DOMINGO. Application of leftover sample material from waterborne protozoa monitoring for the molecular detection of Bacteroidales and fecal source tracking markers. JOURNAL OF MICROBIOLOGICAL METHODS. Elsevier Science Ltd, New York, NY, 86(3):337-343, (2011).

RYU, H., B. Iker, J. Pearce, J. Griffith, AND J. W. SANTO-DOMINGO. Comparison of gull-specific assays targeting 16S rRNA gene of Catellicoccus marimammalium and Streptococcus spp. . Presented at ASM 111th General Meeting, New Orleans, LA, May 21 - 24, 2011.