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2024
Nietch, C., Kristina Laidlaw, R. Labiosa, A. Tatters, H. Mash, J. Lu, J. Lazorchak, T. Sanan, E. Pilgrim, P. Weaver, AND L. Webb. USEPA Regions Research Assessing Field Sampling and Analytical Procedures for Characterizing Risk Posed by Harmful Benthic Cyanobacteria in Streams and Rivers. Benthic HAB Workgroup Meeting, Cincinnati (Virtual), OH, March 26, 2024.
2023
Nietch, C., P. Gledhill, N. Smucker, Matthew Heberling, E. Pilgrim, R. Mitchell, A. Pollard, AND L. Yuan. How Small Stream Monitoring and a Benthic Algae DNA Metabarcoding Study has Informed TMDL Development in a SW Ohio Watershed. LAKELINE. North American Lake Management Society, Madison, WI, (Spring):45-49, (2023).
Pilgrim, E., C. Hatzenbuhler, G. Peterson, A. Szczepanski, C. Larson, A. Trebitz, AND J. Hoffman. How many samples are enough? Trying to determine guidelines for fish eDNA sampling to capture full fish assemblages in lakes. 6th Annual eDNA Technical Exchange Workshop, Virtual, OH, January 24 - 26, 2023.
Hoffman, J., G. Peterson, A. Trebitz, C. Hatzenbuhler, J. Myers, J. Ross, S. Okum, AND E. Pilgrim. Leveraging approaches for early detection monitoring of invasive fish introductions to the Great Lakes. Annual Meeting of the Minnesota Chapter of the American Fisheries Society, St. Cloud, MN, January 31 - February 02, 2023. https://doi.org/10.23645/epacomptox.22048154
Yuan, L., R. Mitchell, A. Pollard, C. Nietch, E. Pilgrim, AND N. Smucker. Understanding the effects of phosphorus on diatom richness in rivers and streams using taxon–environment relationships. FRESHWATER BIOLOGY. Blackwell Publishing, Malden, MA, 68(3):473-486, (2023). https://doi.org/10.1111/fwb.14040
2022
Smucker, N., E. Pilgrim, H. Wu, C. Nietch, J. Darling, M. Molina, B. Johnson, AND L. Yuan. Characterizing temporal variability in streams supports nutrient indicator development using diatom and bacterial DNA metabarcoding. SCIENCE OF THE TOTAL ENVIRONMENT. Elsevier BV, AMSTERDAM, Netherlands, 831:154960, (2022). https://doi.org/10.1016/j.scitotenv.2022.154960
Pilgrim, E., N. Smucker, C. Nietch, J. Darling, H. Wu, AND M. Molina. Comparison of stream periphyton assemblages as indicators of nutrient conditions. Joint Aquatic Sciences Meeting 2022, Grand Rapids, MI, May 14 - 20, 2022.
Pilgrim, E., N. Smucker, H. Wu, J. Martinson, C. Nietch, M. Molina, J. Darling, AND B. Johnson. Developing Indicators of Nutrient Pollution in Streams Using 16S rRNA Gene Metabarcoding of Periphyton-Associated Bacteria. WATER. MDPI, Basel, Switzerland, 14(15):2361, (2022). https://doi.org/10.3390/w14152361
Smucker, N., E. Pilgrim, L. Yuan, R. Mitchell, A. Pollard, C. Nietch, J. Darling, AND D. Carlisle. Diatom-environment relationships in streams of the United States based on DNA metabarcoding. 2022 Joint Aquatic Sciences Meeting, Grand Rapids, MI, May 14 - 20, 2022.
Nietch, C., P. Gledhill, N. Smucker, Matthew Heberling, E. Pilgrim, L. Yuan, AND R. Mitchell. How a stream periphyton metabarcoding nutrient change-point study has informed TMDL development in a Southwestern Ohio watershed. 2022 Joint Aquatic Sciences Meeting, Grand Rapids, MI, May 14 - 20, 2022.
Larson, C., J. Barge, C. Hatzenbuhler, J. Hoffman, G. Peterson, E. Pilgrim, B. Wiechman, C. Rees, AND A. Trebitz. Invasive Dreissena Mussel Coastal Transport From an Already Invaded Estuary to a Nearby Archipelago Detected in DNA and Zooplankton Surveys. Frontiers in Marine Science. Frontiers, Lausanne, Switzerland, 9:818738, (2022). https://doi.org/10.3389/fmars.2022.818738
Smucker, N., E. Pilgrim, R. Mitchell, A. Pollard, C. Nietch, J. Darling, AND D. Carlisle. National scale patterns of diatom-environment relationships in rivers and streams of the United States based on DNA metabarcoding. 36th Congress of the International Society of Limnology 2022, Berlin, GERMANY, August 07 - 22, 2022.
Yuan, L., N. Smucker, C. Nietch, AND E. Pilgrim. Quantifying spatial and temporal relationships between diatoms and nutrients in streams strengthens evidence of nutrient effects from monitoring data. Freshwater Science. The Society for Freshwater Science, Springfield, IL, 41(1):100-112, (2022). https://doi.org/10.1086/718631
2021
Reynolds, L. AND E. Pilgrim. A comparison of fish assemblages estimated from eDNA and electrofishing at NRSA wadeable streams. 2021 Association of Mid-Atlantic Aquatic Biologists Workshop Virtual Meeting, Virtual, March 31 - April 01, 2021.
Reynolds, L. AND E. Pilgrim. A comparison of fish assemblages estimated from eDNA and electrofishing at NRSA wadeablestreams. 12th National Monitoring Conference, NWQMC, Virtual, April 19 - 23, 2021.
Smucker, N., E. Pilgrim, C. Nietch, J. Darling, H. Wu, M. Molina, AND B. Johnson. Characterizing temporal variation in diatom rbcL sequences in streams to inform nutrient indicator development using DNA metabarcoding. IDS 2021 – Online International Diatom Symposium, Virtual, JAPAN, August 23 - 25, 2021.
Hoffman, J., C. Meredith, E. Pilgrim, A. Trebitz, C. Hatzenbuhler, J. Kelly, G. Peterson, J. Lietz, S. Okum, AND J. Martinson. Comparison of larval fish detections using morphology-based taxonomy versus high-throughput sequencing for invasive species early detection. CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES. NRC Research Press, Ottawa, Canada, 78(6):752-764, (2021). https://doi.org/10.1139/cjfas-2020-0224
Bagley, M., J. Darling, E. Pilgrim, AND R. Mitchell. DNA data acceptance criteria for biological assessments: Starting the conversation. 2021 North American Lake Management Society National Monitoring Conference, Virtual, April 19 - 23, 2021.
Fetke, J., J. Martinson, R. Flick, W. Huang, Mary Jean See, D. Bencic, E. Pilgrim, R. Debry, AND A. Biales. DNA methylation and expression of estrogen receptor alpha in fathead minnows exposed to 17α-Ethynylestradiol. SETAC Europe, Duluth, MN, May 03 - 06, 2021. https://doi.org/10.23645/epacomptox.14485257
Fetke, J., J. Martinson, R. Flick, W. Huang, Mary Jean See, E. Pilgrim, R. DeBry, AND A. Biales. DNA methylation and expression of estrogen receptor alpha in fathead minnows exposed to 17α-ethynylestradiol. AQUATIC TOXICOLOGY. Elsevier Science Ltd, New York, NY, 233:105788., (2021). https://doi.org/10.1016/j.aquatox.2021.105788
Larson, C., J. Barge, A. Trebitz, C. Hatzenbuhler, J. Hoffman, E. Pilgrim, G. Peterson, S. Okum, AND B. Wiechman. Dreissena transport from the St. Louis River to Apostle Islands detected in eDNA and zooplankton surveys. International Association of Great Lakes Research (IAGLR) Virtual Conference, Duluth, MN, May 17 - 21, 2021. https://doi.org/10.23645/epacomptox.16619671
Peterson, G., J. Hoffman, A. Trebitz, C. Hatzenbuhler, J. Myers, J. Ross, S. Okum, AND E. Pilgrim. Early detection monitoring for non-indigenous fishes; comparison of survey approaches during two species introductions in a Great Lakes port. Biological Invasions . Springer SBM, New York, NY, , 463-478, (2022). https://doi.org/10.1007/s10530-021-02655-9
Meredith, C., J. Hoffman, A. Trebitz, E. Pilgrim, S. Okum, AND J. Martinson. Evaluating the performance of DNA metabarcoding for assessment of zooplankton communities in Western Lake Superior using multiple markers. Metabarcoding and Metagenomics. Pensoft Publishers, Sofia, Bulgaria, 50:83-97, (2021). https://doi.org/10.3897/mbmg.5.64735
Hatzenbuhler, C., G. Peterson, J. Barge, J. Hoffman, A. Trebitz, S. Okum, AND E. Pilgrim. Testing and refinement of eDNA methodology to support ecological assessment within the St Louis River estuary. St. Louis River Estuary Virtual Summit, Duluth, MN, March 01 - 03, 2021. https://doi.org/10.23645/epacomptox.14075498
2020
Peterson, G., J. Hoffman, A. Trebitz, C. Hatzenbuhler, J. Myers, E. Pilgrim, AND S. Okum. Comparison of early detection survey approaches during two new fish introductions. Upper Midwest Invasive Species Virtual Conference, Duluth, MN, November 02 - 06, 2020. https://doi.org/10.23645/epacomptox.13146284
Smucker, N., E. Pilgrim, C. Nietch, J. Darling, AND B. Johnson. DNA metabarcoding effectively quantifies diatom responses to nutrients in streams. ECOLOGICAL APPLICATIONS. Ecological Society of America, Ithaca, NY, 30(8):e02205, (2020). https://doi.org/10.1002/eap.2205
Hoffman, J., C. Meredith, E. Pilgrim, A. Trebitz, C. Hatzenbuhler, J. Kelly, G. Peterson, J. Lietz, S. Okum, AND J. Martinson. DNA metabarcoding-based identification of fish larvae for invasive species early detection. Upper Midwest Invasive Species Conference, Duluth, MN, November 02 - 06, 2020. https://doi.org/10.23645/epacomptox.13231910
Pilgrim, E., N. Smucker, J. Darling, C. Nietch, AND M. Bagley. Exploring DNA metabarcoding of diatoms and periphyton in a national survey of streams and rivers. 2020 SETAC North America Annual Meeting, Virtual, November 15 - 19, 2020.
Fetke, J., R. Flick, J. Martinson, W. Huang, Mary Jean See, E. Pilgrim, AND A. Biales. Investigating the effects of DNA methylation on EE2 induction of estrogen receptor alpha gene expression in fathead minnows (Pimephales promelas). Society of Integrative and Comparative Biology, Austin, TX, January 03 - 07, 2020.
Darling, J., J. Martinson, K. Pagenkopp-Lohan, K. Carney, E. Pilgrim, A. Banerji, K. Holzer, AND G. Ruiz. Metabarcoding quantifies differences in accumulation of ballast water borne biodiversity among three port systems in the United States. SCIENCE OF THE TOTAL ENVIRONMENT. Elsevier BV, AMSTERDAM, Netherlands, 749:141456, (2020). https://doi.org/10.1016/j.scitotenv.2020.141456
Pilgrim, E. Preliminary Results of the 2017 National Lake Assessment Fish Environmental DNA Survey. NLA Steering Committee, Virtual, September 23, 2020.
Pilgrim, E. So You Want to Start an eDNA/DNA Barcoding Project? 2020 SETAC North America Annual Meeting, Virtual, November 15 - 19, 2020.
Trebitz, A., C. Hatzenbuhler, J. Hoffman, J. Barge, G. Peterson, E. Pilgrim, L. Chadderton, AND A. Tucker. Spatial comparison of eDNA vs. physical fish data from a complex freshwater estuary. Upper Midwest Invasive Species Virtual Conference, Duluth, MN, November 02 - 06, 2020. https://doi.org/10.23645/epacomptox.13122815
Hatzenbuhler, C., J. Barge, A. Cotter, J. Hoffman, C. Meredith, G. Peterson, S. Okum, E. Pilgrim, B. Wiechman, AND A. Trebitz. St. Louis River estuary as possible Dreissena veliger source to western Lake Superior. Presented at St. Louis River Summit, Duluth,MN, March 03 - 04, 2020.
Barge, J., C. Hatzenbuhler, A. Cotter, J. Hoffman, C. Meredith, G. Peterson, S. Okum, E. Pilgrim, B. Wiechman, AND A. Trebitz. St. Louis River estuary as possible Dreissena veliger source to western Lake Superior. Upper Midwest Invasive Species Virtual Conference, Duluth, MN, November 02 - 06, 2020. https://doi.org/10.23645/epacomptox.13138586
Meredith, C., A. Trebitz, J. Hoffman, C. Hatzenbuhler, E. Pilgrim, S. Okum, J. Martinson, AND G. Peterson. Strategies and challenges in detecting non-indigenous species in the Great Lakes. Ecological Society of America Virtual Conference, Salt Lake City, UT, August 02 - 07, 2020.
Hatzenbuhler, C., J. Barge, A. Cotter, J. Hoffman, C. Meredith, G. Peterson, S. Okum, E. Pilgrim, B. Wiechman, AND A. Trebitz. Using DNA tools to elucidate source of invasive Dreissena veligers to western Lake Superior. Upper Midwest Invasive Species Conference, Duluth, MN, October 12 - 14, 2020.
2019
Pilgrim, E., N. Smucker, C. Nietch, J. Darling, AND B. Johnson. A Preliminary Look At DNA Metabarcoding Stream and River Diatoms in a National Survey. 2019 Society of Freshwater Science Annual Meeting, Salt Lake City, Utah, May 19 - 24, 2019.
Pilgrim, E. Applying DNA Metabarcoding to Periphyton Biomonitoring: Lessons Learned from Mesocosm, Watershed, and National Scale Research. 2019 Coastal & Estuarine Research Federation Conference, Mobile, AL, November 03 - 07, 2019.
Barge, J., A. Trebitz, M. Sykes, C. Hatzenbuhler, AND E. Pilgrim. Building up the Great Lakes fauna inventory and DNA barcode library. International Association for Great Lakes Research, Brockport, NY, June 10 - 14, 2019.
Hoffman, J., M. Mills, G. Peterson, M. Pearson, T. Angradi, D. Walters, M. Elliot, S. Janssen, J. DeWild, D. Krabbenhoft, AND E. Pilgrim. Characterizing sources, biogeochemistry, and accumulation of Hg in food webs of the St. Louis River Area of Concern. 2019 SETAC North America Annual Meeting, Toronto, CANADA, November 03 - 07, 2019.
Pilgrim, E. Complementing National Assessment Programs with DNA Metabarcoding Surveys. 2019 International Workshop on Environmental Genomics, St Johns, CANADA, June 12 - 13, 2019.
Fetke, J., R. Flick, J. Martinson, W. Huang, Mary Jean See, E. Pilgrim, AND A. Biales. DNA Methylation Profile of Estrogen Receptor Alpha in Fish Exposed to EE2. SETAC North America, Toronto, ON, CANADA, November 03 - 07, 2019.
Trebitz, A., C. Hatzenbuhler, J. Hoffman, C. Meredith, Greg Peterson, E. Pilgrim, J. Barge, A. Cotter, AND M. Wick. Dreissena veligers in western Lake Superior -- inference from new low-density detection. JOURNAL OF GREAT LAKES RESEARCH. International Association for Great Lakes Research, Ann Arbor, MI, 45(3):691-699, (2019). https://doi.org/10.1016/j.jglr.2019.03.013
Bagley, M., E. Pilgrim, M. Knapp, C. Yoder, J. Santo Domingo, AND A. Banerji. High-Throughput Environmental DNA Analysis Informs Biological Assessment of an Urban Stream. 2019 SFS Annual Meeting, Salt Lake City, UT, May 19 - 23, 2019.
Bagley, M., E. Pilgrim, M. Knapp, C. Yoder, J. Santodomingo, AND A. Banerji. High-throughput environmental DNA analysis informs a biological assessment of an urban stream. ECOLOGICAL INDICATORS. Elsevier Science Ltd, New York, NY, 104:378-389, (2019). https://doi.org/10.1016/j.ecolind.2019.04.088
Trebitz, A., J. Hoffman, E. Pilgrim, AND G. Peterson. Lessons learned from broad-spectrum early-detection monitoring in the Laurentian Great Lakes. International Conference on Aquatic Invasive Species, Montreal, N/A, CANADA, October 27 - 31, 2019.
Smucker, N., C. Nietch, E. Pilgrim, Matthew Heberling, A. Safwat, J. McManus, R. McClatchey, H. Lubbers, AND L. Lenhart. Translating historical and ongoing monitoring data into goals and actions in watersheds. 2019 Society for Freshwater Science Annual Meeting, Salt Lake City, UT, May 19 - 23, 2019.
Hatzenbuhler, C., W. Chadderton, J. Hoffman, S. Okum, B. Olds, E. Pilgrim, A. Trebitz, A. Tucker, AND M. Renshaw. Using eDNA to elucidate distribution of fish species in a complex river system. St. Louis River Summit, Superior, WI, March 05 - 06, 2019.
Smucker, N., E. Pilgrim, AND C. Nietch. Using ecological responses to inform freshwater nutrient targets. 2019 Ecological Society of America Annual Meeting, Louisville, KY, August 12 - 16, 2019.
2018
Lazorchak, Jim, J. Hoffman, M. Mills, K. Fritz, Greg Peterson, M. Pearson, T. Angradi, D. Walters, M. Elliott, S. Janssen, J. DeWild, D. Krabbenhoft, AND E. Pilgrim. Assessing the suitability of the Bad River as a reference system for the St Louis River AOC using geochemistry, biotic condition of macroinvertebrates and bioaccumulation of mercury. 2018 SETAC NA Annual Meeting, Sacramento, California, November 04 - 08, 2018.
Darling, J., J. Martinson, Y. Gong, S. Okum, E. Pilgrim, K. Pagenkopp Lohan, J. Carney, AND G. Ruiz. Ballast Water Exchange and Invasion Risk Posed by Intracoastal Vessel Traffic: An Evaluation Using High Throughput Sequencing. ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, 52(17):9926-9936, (2018). https://doi.org/10.1021/acs.est.8b02108
Barge, J., C. Hatzenbuhler, A. Cotter, J. Hoffman, C. Meredith, Greg Peterson, S. Okum, E. Pilgrim, A. Trebitz, AND M. Wick. Early-detection monitoring survey addressing Dreissenid incursions to Apostle Islands National Lakeshore. State of Lake Superior Conference, Houghton, MI, October 09 - 12, 2018.
Hatzenbuhler, C., J. Barge, A. Cotter, J. Hoffman, C. Meredith, Greg Peterson, S. Okum, E. Pilgrim, A. Trebitz, AND M. Wick. Early-detection monitoring survey addressing dreissenid incursions to Apostle Islands National Lakeshore. Upper Midwest Invasive Species Conference, Rochester, MN, October 15 - 18, 2018.
Pilgrim, E., A. Banerji, J. Darling, C. Hatzenbuhler, J. Hoffman, A. Maloy, J. Martinson, R. Mitchell, C. Meredith, S. Okum, A. Trebitz, AND L. Yuan. How Gene Marker and PCR Primer Choice Influence DNA Metabarcoding of Aquatic Communities. 2018 Society of Freshwater Science Annual Meeting, Detroit, MI, May 20 - 24, 2018.
Trebitz, A., C. Hatzenbuhler, J. Hoffman, C. Meredith, Greg Peterson, J. Martinson, S. Okum, AND E. Pilgrim. Pairing traditional biological assessment with DNA-based tools for AIS early-detection monitoring. Upper Midwest Invasive Species Conference, Rochester, MN, October 15 - 18, 2018.
Banerji, A., M. Bagley, M. Elk, E. Pilgrim, J. Martinson, AND J. Santodomingo. Spatial and temporal dynamics of a freshwater eukaryotic plankton community revealed via 18S rRNA gene metabarcoding. HYDROBIOLOGIA. Springer, New York, NY, 818(1):71-86, (2018). https://doi.org/10.1007/s10750-018-3593-0
Hatzenbuhler, C., W. Chadderton, J. Hoffman, S. Okum, B. Olds, E. Pilgrim, A. Trebitz, A. Tucker, AND M. Wrenshaw. Using eDNA to estimate distribution of fish species in a complex river system (presentation). Society for Freshwater Science, Detroit, MI, May 20 - 24, 2018.
Meredith, C., J. Hoffman, A. Trebitz, E. Pilgrim, J. Martinson, AND S. Okum. Using occupancy modeling to compare traditional versus DNA metabarcoding methods for characterizing zooplankton biodiversity. Freshwater Science, Detroit, MI, May 20 - 24, 2018.
2017
Hoffman, J., C. Meredith, A. Trebitz, Greg Peterson, J. Lietz, C. Hatzenbuhler, E. Pilgrim, S. Okum, AND J. Martinson. DNA metabarcoding of fish larvae for detection of non-native fishes. Ichthyologists and Herpetologists Meeting, Austin, TX, July 12 - 16, 2017.
Meredith, C., J. Hoffman, A. Trebitz, Greg Peterson, J. Lietz, C. Hatzenbuhler, E. Pilgrim, S. Okum, AND J. Martinson. Development of DNA-based Identification methods to track the species composition of fish larvae within nearshore areas of the Great Lakes. Minnesota Chapter of the American Fisheries Society, St. Cloud, MN, February 21 - 23, 2017.
Trebitz, A., J. Hoffman, J. Darling, E. Pilgrim, J. Kelly, E. Brown, W. Chadderton, S. Egan, E. Grey, S. Hashsham, K. Klymus, A. Mahon, J. Ram, M. Schultz, C. Stepien, AND J. Schardt. Early detection monitoring for aquatic non-indigenous species: optimizing surveillance, incorporating advanced technologies, and identifying research needs. JOURNAL OF ENVIRONMENTAL MANAGEMENT. Elsevier Science Ltd, New York, NY, 202:299-310, (2017).
Pilgrim, E. Expanding Genomic Biomonitoring to Regional & National Scale Projects. International Workshop on Environmental Genomics, St. John's, Newfoundland, CANADA, June 07 - 09, 2017.
Ware, J., E. Pilgrim, M. May, N. Donnelly, AND K. Tennessen. Phylogenetic relationships of North American Gomphidae and their close relatives. Systematic Entomology. John Wiley & Sons, Inc., Hoboken, NJ, 42(2):347-358, (2017). https://doi.org/10.1111/syen.12218
Barge, J., C. Hatzenbuhler, J. Hoffman, Greg Peterson, E. Pilgrim, AND A. Trebitz. Plans and progress for building a Great Lakes fauna DNA barcode reference library. St. Louis River Estuary summit, Superior, WI, March 14 - 15, 2017.
Hatzenbuhler, C., J. Kelly, J. Martinson, S. Okum, AND E. Pilgrim. Sensitivity and accuracy of high-throughput metabarcoding methods for early detection of invasive fish species. Scientific Reports. Nature Publishing Group, London, Uk, 7:1-10 (46393), (2017).
Hatzenbuhler, C., W. Chadderton, J. Hoffman, S. Okum, B. Olds, E. Pilgrim, A. Trebitz, A. Tucker, AND M. Wrenshaw. Using eDNA to estimate distribution of fish species in the St. Louis River. St. Louis River Summit, Superior, WI, March 14 - 15, 2017.
Pilgrim, E. eDNA Applications for Detecting & Monitoring Invasive Species. University of Cincinnati course in Invasive Species, Cincinnati, OH, March 27, 2017.
2016
Meredith, C., J. Hoffman, A. Trebitz, Greg Peterson, J. Lietz, C. Hatzenbuhler, E. Pilgrim, S. Okum, AND J. Martinson. Benefits and challenges to using DNA-based identification methods: An example study of larval fish from nearshore areas of Lake Superior. Minnesota Society of the American Fisheries Society, Duluth, MN, February 01 - 03, 2016.
Trebitz, A., J. Hoffman, Greg Peterson, E. Pilgrim, J. Martinson, J. Lietz, C. Hatzenbuhler, S. Okum, Y. Zhang, AND C. Meredith. Challenges and progress in making DNA-based AIS early detection monitoring operational. Upper Midwest Invasive Species, La Crosse, WI, October 16 - 19, 2016.
Trebitz, A., J. Hoffman, Greg Peterson, E. Pilgrim, J. Martinson, J. Lietz, C. Hatzenbuhler, S. Okum, Y. Zhang, AND C. Meredith. Challenges and progress in making DNA-based monitoring operational AIS early detection as testbed. International Association for Great Lakes Research, Guelph, ON, CANADA, June 06 - 10, 2016.
Mitchell, R., A. Pollard, L. Yuan, AND E. Pilgrim. Comparing metagenomic and morphological periphyton assemblage data to major environmental gradients: A pilot study from the National Rivers and Stream Assessment. Society of Freshwater Science 2016 Annual Meeting, Sacramento, CA, May 22 - 26, 2016.
Banerji, A., M. Bagley, E. Pilgrim, J. Martinson, S. Guglielmi, Dan Tettenhorst, J. Shoemaker, Joel Allen, C. Nietch, J. Santodomingo, J. Lu, AND Jim Lazorchak. Do Eukaryotic Species Interactions Drive Freshwater HAB Dynamics? SETAC World Congress/ SETAC North America 37th Annual Meeting, Orlando, FL, November 06 - 10, 2016.
Pilgrim, E., S. Okum, J. Martinson, J. Hoffman, Greg Peterson, J. Lietz, AND C. Hatzenbuhler. Expanding Larval Fish DNA Metabarcoding to All the Great Lakes. Upper Midwest Invasive Species Conference, La Crosse, WI, October 16 - 19, 2016.
Meredith, C., J. Hoffman, A. Trebitz, Greg Peterson, J. Lietz, C. Hatzenbuhler, E. Pilgrim, S. Okum, AND J. Martinson. Integrating DNA-based data into bioassessments improves our understanding of species distributions and species habitat relationships. Midwest Invasive Species Conference, La Crosse, WI, October 16 - 19, 2016.
Peterson, Greg, J. Lietz, J. Hoffman, E. Pilgrim, AND M. Gutsch. Morphological features to distinguish the larval stage of invasive Ruffe (Gymnocephalus cernuus) from native fish species. Minnesota Society of the American Fisheries Society, Duluth, MN, February 01 - 03, 2016.
Pilgrim, E. AND E. Stein. Moving Genetic Biomonitoring from a Concept to a Tool. 2016 Annual Meeting of the Society of Freshwater Science, Sacramento, CA, May 22 - 26, 2016.
Hatzenbuhler, C., J. Kelly, E. Pilgrim, S. Okum, AND J. Martinson. Sensitivity and accuracy of DNA based methods used to describe aquatic communities for early detection of invasive fish species. Minnesota Society of the American Fisheries Society, Duluth, MN, February 01 - 03, 2016.
Hatzenbuhler, C., J. Hoffman, J. Kelly, J. Lietz, J. Martinson, S. Okum, Greg Peterson, AND E. Pilgrim. Sensitivity and accuracy of high-throughput metabarcoding methods used to describe aquatic communities for early detection of invasve fish species. Society of Freshwater Science, Sacramento, CA, May 20 - 26, 2016.
2015
Trebitz, A., J. Hoffman, E. Pilgrim, Greg Peterson, AND J. Lietz. Capacity for DNA-barcode based taxonomy in support of Great Lakes biological monitoring. IAGLR Conference, Burlington, VT, May 25 - 29, 2015.
Peterson, Greg, J. Lietz, J. Hoffman, AND E. Pilgrim. Morphological features to distinguish the larval stage of invasive Ruffe from native fish species. IAGLR Conference, Burlington, VT, May 25 - 29, 2015.
Trebitz, A., J. Hoffman, G. Grant, T. Billehus, AND E. Pilgrim. Potential for DNA-based identification of Great Lakes fauna: Match and mismatch between taxa inventories and DNA barcode libraries. Scientific Reports. Nature Publishing Group, London, Uk, 5:1-11, (2015).
2014
White, B., E. Pilgrim, L. Boykin, E. Stein, AND R. Mazor. Comparison of four species-delimitation methods applied to a DNA barcode data set of insect larvae for use in routine bioassessment for use in routine bioassessment. Freshwater Science. The Society for Freshwater Science, Springfield, IL, 33(1):338-348, (2014).
Jackson, J., J. Battle, B. White, E. Pilgrim, E. Stein, P. Miller, AND B. Sweeney. Cryptic biodiversity in streams: a comparison of macroinvertebrate communities based on morphological and DNA barcode identifications. Freshwater Science. The Society for Freshwater Science, Springfield, IL, 33(1):312-324, (2014).
Stein, E., B. White, R. Mazor, J. Jackson, J. Battle, P. Miller, E. Pilgrim, AND B. Sweeney. Does DNA barcoding improve performance of traditional stream bioassessment metrics? Freshwater Science. The Society for Freshwater Science, Springfield, IL, 33(1):302-311, (2014).
Hoffman, J., E. Pilgrim, A. Trebitz, J. Kelly, Greg Peterson, S. Matthews, AND J. Martinson. Early detection of non-native fishes using next-generation DNA sequencing of fish larvae. Presented at Upper Midwest Invasive Species Conference, Duluth, MN, October 20 - 22, 2014.
Hatzenbuhler, C., J. Kelly, E. Pilgrim, AND J. Martinson. Evaluating non-detection risk associated with metabarcoding approaches for rare metabarcoding approaches. Presented at Upper Midwest Invasive Species Conference, Duluth, MN, October 20 - 23, 2014.
Trebitz, A., J. Hoffman, E. Pilgrim, T. Billehus, Greg Peterson, AND J. Kelly. Potential for DNA-based ID of Great Lakes fauna: Species inventories vs. barcode libraries. Presented at Upper Midwest Invasive Species Conference, Duluth, MN, October 20 - 22, 2014.
2013
Hoffman, J., E. Pilgrim, A. Trebitz, J. Kelly, AND Greg Peterson. Early detection of non-native fishes using fish larvae. Presented at Conference on Aquatic Invasive Species, Niagra Falls, ON, CANADA, April 21 - 25, 2013.
Stein, E., B. White, R. Mazor, P. Miller, AND E. Pilgrim. Evaluating Ethanol-based Sample Preservation to Facilitate Use of DNA Barcoding in Routine Freshwater Biomonitoring Programs Using Benthic Macroinvertebrates. PLOS ONE
. Public Library of Science, San Francisco, CA, 8(1):e51273, (2013).
Pilgrim, E., M. Blum, D. Reusser, H. Lee, AND J. Darling. Geographic range and structure of cryptic genetic diversity among Pacific North American populations of the non-native amphipod Grandidierella japonica. Biological Invasions . Springer SBM, New York, NY, 15(11):2415-2428, (2013).
Trebitz, A., J. Kelly, J. Hoffman, Greg Peterson, AND E. Pilgrim. Progress towards design elements for a Great Lakes-wide aquatic invasive species early detection network. Presented at St. Louis River Estuary summit, February 26 - 27, 2013.
2012
PILGRIM, E., S. A. JACKSON, AND J. W. MARTINSON. Applying next-generation DNA sequencing technology to aquatic bioassessment. Presented at EcoSummit 2012, Columbus, OH, September 30 - October 05, 2012.
Smith, R. F., W. O. Lamp, AND E. PILGRIM. By land or by stream? contribution of constrained dispersal by adult caddisflies to diversity loss from urban headwaters. Presented at Society of Freshwater Science, Louisville, KY, May 20 - 24, 2012.
Jackson, J. K., J. M. Battle, B. White, E. Stein, E. PILGRIM, P. E. Miller, AND B. W. Sweeney. Cryptic biodiversity in streams - a comparison of macroinvertebrate communities based on morphological and DNA barcode identifications. Presented at Society of Freshwater Science, Louisville, KY, May 20 - 24, 2012.
PILGRIM, E., L. M. Boykin, AND B. White. DNA barcodes, species delimitation, and bioassessment: issues of diversity, analysis, and standardization. Presented at Society of Freshwater Science, Louisville, KY, May 20 - 24, 2012.
White, B., E. PILGRIM, R. Mazor, AND E. Stein. Do DNA barcoding delimitation methods affect our view of stream biodiversity? Presented at Society of Freshwater Science, Louisville, KY, May 20 - 24, 2012.
PILGRIM, E. Future collaborations between NEON and the U.S. EPA: linking molecular genomics for bioassessment with national ecological data sets. Presented at Society of Freshwater Science, Louisville, KY, May 20 - 24, 2012.
Stein, E. D., P. Miller, B. Sweeney, AND E. PILGRIM. Moving DNA barcoding toward bioassessment application: roadmap of challenges and solutions. Presented at Society of Freshwater Science, Louisville, KY, May 20 - 24, 2012.
2011
PILGRIM, E. Genetics? DNA sequences? But I'm an aquatic entomologist! Presented at Entomological Society of America Annual Meeting, Reno, NV, November 15, 2011.