TY - JOUR A1 - Alves, V M A1 - Muratov, E A1 - Fourches, D A1 - Strickland, J A1 - Kleinstreuer, N A1 - Andrade, C H A1 - Tropsha, A T1 - Predicting chemically-induced skin reactions. Part I: QSAR models of skin sensitization and their application to identify potentially hazardous compounds. Y1 - 2015/04/15 N1 - R833825 N1 - R835166 VL - 284 IS - 2 SP - 262 EP - 272 ER - TY - JOUR A1 - Alves, V M A1 - Muratov, E A1 - Fourches, D A1 - Strickland, J A1 - Kleinstreuer, N A1 - Andrade, C H A1 - Tropsha, A T1 - Predicting chemically-induced skin reactions. Part II: QSAR models of skin permeability and the relationships between skin permeability and skin sensitization. Y1 - 2015/04/15 N1 - R833825 N1 - R835166 VL - 284 IS - 2 SP - 273 EP - 280 ER - TY - JOUR A1 - Borysov, P A1 - Hannig, J A1 - Marron, J S A1 - Muratov, E A1 - Fourches, D A1 - Tropsha, A T1 - Activity prediction and identification of mis-annotated chemical compounds using extreme descriptors. Y1 - 2016/03/ N1 - R833825 N1 - R832720 JF - JOURNAL OF CHEMOMETRICS J1 - J CHEMOMETR VL - 30 IS - 3 SP - 99 EP - 108 ER - TY - JOUR A1 - Fourches, D A1 - Barnes, J C A1 - Day, N C A1 - Bradley, P A1 - Reed, J Z A1 - Tropsha, A T1 - Cheminformatics analysis of assertions mined from literature that describe drug-induced liver injury in different species. Y1 - 2010/01/ N1 - R833825 N1 - R832720 JF - CHEMICAL RESEARCH TOXICOLOGY VL - 23 IS - 1 SP - 171 EP - 183 ER - TY - JOUR A1 - Fourches, D A1 - Muratov, E A1 - Tropsha, A T1 - Trust, but verify: on the importance of chemical structure curation in cheminformatics and QSAR modeling research. Y1 - 2010/07/26 N1 - R833825 N1 - R832720 JF - JOURNAL OF CHEMICAL INFORMATION AND MODELING J1 - Journal of Chemical Information and Modeling J2 - Journal of Chemical Information and Modeling VL - 50 IS - 7 SP - 1189 EP - 1204 ER - TY - JOUR A1 - Fourches, D A1 - Muratov, E A1 - Ding, F A1 - Dokholyan, N V A1 - Tropsha, A T1 - Predicting binding affinity of CSAR ligands using both structure-based and ligand-based approaches. Y1 - 2013/08/26 N1 - R833825 N1 - R832720 JF - JOURNAL OF CHEMICAL INFORMATION AND MODELING J1 - Journal of Chemical Information and Modeling J2 - Journal of Chemical Information and Modeling VL - 53 IS - 8 SP - 1915 EP - 1922 ER - TY - JOUR A1 - Ham, J A1 - Sun, W T1 - Partial correlation matrix estimation using ridge penalty followed by thresholding and re-estimation. Y1 - 2014/09/ N1 - R833825 JF - BIOMETRICS J1 - BIOMETRICS VL - 70 IS - 3 SP - 765 EP - 773 ER - TY - JOUR A1 - Low, Y S A1 - Sedykh, A Y A1 - Rusyn, I A1 - Tropsha, A T1 - Integrative approaches for predicting in vivo effects of chemicals from their structural descriptors and the results of short-term biological assays. Y1 - 2014// N1 - R833825 N1 - R832720 N1 - R835166 VL - 14 IS - 11 SP - 1356 EP - 1364 ER - TY - JOUR A1 - Muratov, E N A1 - Varlamova, E V A1 - Artemenko, A G A1 - Khristova, T A1 - Kuz'min, V E A1 - Makarov, V A A1 - Riabova, O B A1 - Wutzler, P A1 - Schmidtke, M T1 - QSAR analysis of (biphenyloxy)propyl isoxazoles: agents against coxsackievirus B3. Y1 - 2011/01/ N1 - R833825 N1 - R832720 JF - FUTURE MEDICINAL CHEMISTRY VL - 3 IS - 1 SP - 15 EP - 27 ER - TY - JOUR A1 - Muratov, E N A1 - Varlamova, E V A1 - Artemenko, A G A1 - Polishchuk, P G A1 - Kuz'min, V E T1 - Existing and developing approaches for QSAR analysis of mixtures. Y1 - 2012/04/ N1 - R833825 N1 - R832720 JF - MOLECULAR INFORMATICS VL - 31 IS - 3-4 SP - 202 EP - 221 ER - TY - JOUR A1 - Muratov, E N A1 - Varlamova, E V A1 - Artemenko, A G A1 - Polishchuk, P G A1 - Nikolaeva-Glomb, L A1 - Galabov, A S A1 - Kuz'min, V E T1 - QSAR analysis of poliovirus inhibition by dual combinations of antivirals. Y1 - 2013/10/ N1 - R833825 N1 - R832720 JF - STRUCTURAL CHEMISTRY J1 - STRUCT CHEM VL - 24 IS - 5 SP - 1665 EP - 1679 ER - TY - JOUR A1 - Politi, R A1 - Rusyn, I A1 - Tropsha, A T1 - Prediction of binding affinity and efficacy of thyroid hormone receptor ligands using QSAR and structure-based modeling methods. Y1 - 2014/10/1 N1 - R833825 N1 - R835166 JF - TOXICOLOGY AND APPLIED PHARMACOLOGY J1 - TOXICOL APPL PHARM J2 - Toxicol.Appl.Pharmacol. J3 - Toxicol Appl Pharmacol J4 - Toxicology and Applied Pharmacology VL - 280 IS - 1 SP - 177 EP - 189 ER - TY - JOUR A1 - Sun, W A1 - Li, L T1 - Multiple loci mapping via model-free variable selection. Y1 - 2012/03/ N1 - R833825 JF - BIOMETRICS J1 - BIOMETRICS VL - 68 IS - 1 SP - 12 EP - 22 ER - TY - JOUR A1 - Zhang, L A1 - Sedykh, A A1 - Tripathi, A A1 - Zhu, H A1 - Afantitis, A A1 - Mouchlis, V D A1 - Melagraki, G A1 - Rusyn, I A1 - Tropsha, A T1 - Identification of putative estrogen receptor-mediated endocrine disrupting chemicals using QSAR- and structure-based virtual screening approaches. Y1 - 2013/10/1 N1 - R833825 N1 - R835166 VL - 272 IS - 1 SP - 67 EP - 76 ER - TY - JOUR A1 - Zhang, X A1 - Huang, S A1 - Sun, W A1 - Wang, W T1 - Rapid and robust resampling-based multiple-testing correction with application in a genome-wide expression quantitative trait loci study. Y1 - 2012/04/ N1 - R833825 JF - GENETICS J1 - GENETICS VL - 190 IS - 4 SP - 1511 EP - 1520 ER - TY - CONF A1 - Abdo, N A1 - Xia, M A1 - Kosyk, O A1 - Huang, R A1 - Sakamuru, S A1 - Brown, C T1 - The 1000 genomes toxicity screening project: utilizing the power of human genome variation for population-scale in vitro testing. Y1 - 2013/03/10-14 N1 - R833825 N1 - R835166 ER -