TY - Abstract
A1 - Easterling, M
A1 - Tropsha, A
A1 - Ye, L
A1 - Pirone, J
A1 - Zhu, H
A1 - Martin, T
A1 - Moudgal, C
T1 - Quantitative structure toxicity relationships (QSTR) models for predicting acute/sub-acute and sub-chronic/chronic adverse effect levels.
Y1 - 2009/03/
N1 - R832720
VL - 108
IS - 1
SP - 234
ER -
TY - Abstract
A1 - Zhang, L
A1 - Zhu, H
A1 - Rusyn, I
A1 - Judson, R
T1 - Cheminformatics analysis of EPA ToxCast chemical libraries to identify domains of applicability for predictive toxicity models and prioritize compounds for toxicity testing.
Y1 - 2009/03/
N1 - R832720
VL - 108
IS - 1
SP - 226
ER -
TY - Abstract
A1 - Zhu, H
A1 - Martin, T M
A1 - Ye, L
A1 - Young, D M
T1 - Combinatorial QSAR modeling of rat acute toxicity by oral exposure.
Y1 - 2009/03/
N1 - R832720
VL - 108
IS - 1
SP - 234
ER -
TY - CHAP
A1 - Stotts, D
A1 - Lee, K
A1 - Rusyn, I
T1 - Supporting Computational Systems Science:Genomic Analysis Tool Federations Using Aspects and AOP.
Y1 - 2008/04/
N1 - R832720
ER -
TY - JOUR
A1 - Borysov, P
A1 - Hannig, J
A1 - Marron, J S
A1 - Muratov, E
A1 - Fourches, D
A1 - Tropsha, A
T1 - Activity prediction and identification of mis-annotated chemical compounds using extreme descriptors.
Y1 - 2016/03/
N1 - R833825
N1 - R832720
JF - JOURNAL OF CHEMOMETRICS
J1 - J CHEMOMETR
VL - 30
IS - 3
SP - 99
EP - 108
ER -
TY - JOUR
A1 - Bradford, B U
A1 - O'Connell, T M
A1 - Han, J
A1 - Kosyk, O
A1 - Shymonyak, S
A1 - Ross, P K
A1 - Winnike, J
A1 - Kono, H
A1 - Rusyn, I
T1 - Metabolomic profiling of a modified alcohol liquid diet model for liver injury in the mouse uncovers new markers of disease.
Y1 - 2008/10/15
N1 - R832720
VL - 232
IS - 2
SP - 236
EP - 243
ER -
TY - JOUR
A1 - Chen, M
A1 - Ibrahim, J G
A1 - Chi, Y
T1 - A new class of mixture models for differential gene expression in DNA microarray data.
Y1 - 2008/02/1
N1 - R832720
JF - JOURNAL OF STATISTICAL PLANNING AND INFERENCE
J1 - J STAT PLAN INFER
VL - 138
IS - 2
SP - 387
EP - 404
ER -
TY - JOUR
A1 - Fourches, D
A1 - Barnes, J C
A1 - Day, N C
A1 - Bradley, P
A1 - Reed, J Z
A1 - Tropsha, A
T1 - Cheminformatics analysis of assertions mined from literature that describe drug-induced liver injury in different species.
Y1 - 2010/01/
N1 - R833825
N1 - R832720
JF - CHEMICAL RESEARCH TOXICOLOGY
VL - 23
IS - 1
SP - 171
EP - 183
ER -
TY - JOUR
A1 - Fourches, D
A1 - Muratov, E
A1 - Tropsha, A
T1 - Trust, but verify: on the importance of chemical structure curation in cheminformatics and QSAR modeling research.
Y1 - 2010/07/26
N1 - R833825
N1 - R832720
JF - JOURNAL OF CHEMICAL INFORMATION AND MODELING
J1 - Journal of Chemical Information and Modeling
J2 - Journal of Chemical Information and Modeling
VL - 50
IS - 7
SP - 1189
EP - 1204
ER -
TY - JOUR
A1 - Fourches, D
A1 - Muratov, E
A1 - Ding, F
A1 - Dokholyan, N V
A1 - Tropsha, A
T1 - Predicting binding affinity of CSAR ligands using both structure-based and ligand-based approaches.
Y1 - 2013/08/26
N1 - R833825
N1 - R832720
JF - JOURNAL OF CHEMICAL INFORMATION AND MODELING
J1 - Journal of Chemical Information and Modeling
J2 - Journal of Chemical Information and Modeling
VL - 53
IS - 8
SP - 1915
EP - 1922
ER -
TY - JOUR
A1 - Gatti, D M
A1 - Shabalin, A A
A1 - Lam, T- C
A1 - Wright, F A
A1 - Rusyn, I
A1 - Nobel, A B
T1 - FastMap: fast eQTL mapping in homozygous populations.
Y1 - 2009/02/15
N1 - R833825
N1 - R832720
VL - 25
IS - 4
SP - 482
EP - 489
ER -
TY - JOUR
A1 - Gatti, D M
A1 - Sypa, M
A1 - Rusyn, I
A1 - Wright, F A
A1 - Barry, W T
T1 - SAFEGUI: resampling-based tests of categorical significance in gene expression data made easy.
Y1 - 2009/02/15
N1 - R833825
N1 - R832720
VL - 25
IS - 4
SP - 541
EP - 542
ER -
TY - JOUR
A1 - Gatti, D M
A1 - Harrill, A H
A1 - Wright, F A
A1 - Threadgill, D W
A1 - Rusyn, I
T1 - Replication and narrowing of gene expression quantitative trait loci using inbred mice.
Y1 - 2009/07/17
N1 - R833825
N1 - R832720
JF - MAMMALIAN GENOME
J1 - MAMM GENOME
VL - 20
IS - 7
SP - 437
EP - 446
ER -
TY - JOUR
A1 - Gatti, D
A1 - Maki, A
A1 - Chesler, E J
A1 - Kirova, R
A1 - Kosyk, O
A1 - Lu, L
A1 - Manly, K F
A1 - Williams, R W
A1 - Perkins, A
A1 - Langston, M A
A1 - Threadgill, D W
A1 - Rusyn, I
T1 - Genome-level analysis of genetic regulation of liver gene expression networks.
Y1 - 2007/08/
N1 - R832720
JF - HEPATOLOGY
J1 - HEPATOLOGY
VL - 46
IS - 2
SP - 548
EP - 557
ER -
TY - JOUR
A1 - Gelfond, J
A1 - Ibrahim, J G
A1 - Zou, F
T1 - Proximity model for expression quantitative trait loci (eQTL) detection.
Y1 - 2007/12/
N1 - R832720
JF - BIOMETRICS
J1 - BIOMETRICS
VL - 63
IS - 4
SP - 1108
EP - 1116
ER -
TY - JOUR
A1 - Ghosh, A
A1 - Zou, F
A1 - Wright, F A
T1 - Estimating odds ratios in genome scans:an approximate conditional likelihood approach.
Y1 - 2008/05/9
N1 - R832720
VL - 82
IS - 5
SP - 1064
EP - 1074
ER -
TY - JOUR
A1 - Graham, M R
A1 - Virtaneva, K
A1 - Porcella, S F
A1 - Gardner, D J
A1 - Long, R D
A1 - Welty, D M
A1 - Barry, W T
A1 - Johnson, C A
A1 - Parkins, L D
A1 - Wright, F A
A1 - Musser, J M
T1 - Analysis of the transcriptome of Group A Streptococcus in mouse soft tissue infection.
Y1 - 2006/09/
N1 - R832720
JF - AMERICAN JOURNAL OF PATHOLOGY
J1 - AM J PATHOL
VL - 169
IS - 3
SP - 927
EP - 942
ER -
TY - JOUR
A1 - Gupta, M
A1 - Ibrahim, J G
T1 - Variable selection in regression mixture modeling for the discovery of gene regulatory networks.
Y1 - 2007/09/1
N1 - R832720
JF - JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION
J1 - J AM STAT ASSOC
VL - 102
IS - 479
SP - 867
EP - 880
ER -
TY - JOUR
A1 - Gupta, M
T1 - Generalized hierarchical Markov models for the discovery of length-constrained sequence features from genome tiling arrays.
Y1 - 2007/09/
N1 - R832720
JF - BIOMETRICS
J1 - BIOMETRICS
VL - 63
IS - 3
SP - 797
EP - 805
ER -
TY - JOUR
A1 - Han, J
A1 - Danell, R M
A1 - Patel, J R
A1 - Gumerov, D R
A1 - Scarlett, C O
A1 - Speir, J P
A1 - Parker, C E
A1 - Rusyn, I
A1 - Zeisel, S
A1 - Borchers, C
T1 - Towards high throughput metabolomics using ultrahigh field Fourier transform ion cyclotron resonance mass spectrometry.
Y1 - 2008/06/
N1 - R832720
VL - 4
IS - 2
SP - 128
EP - 140
ER -
TY - JOUR
A1 - Harrill, A H
A1 - Rusyn, I
T1 - Systems biology and functional genomics approaches for the identification of cellular responses to drug toxicity.
Y1 - 2008/11/
N1 - R832720
VL - 4
IS - 11
SP - 1379
EP - 1389
ER -
TY - JOUR
A1 - Harrill, A H
A1 - Ross, P K
A1 - Gatti, D M
A1 - Threadgill, D W
A1 - Rusyn, I
T1 - Population-based discovery of toxicogenomics biomarkers for hepatotoxicity using a laboratory strain diversity panel.
Y1 - 2009/07/
N1 - R833825
N1 - R832720
JF - TOXICOLOGICAL SCIENCES
J1 - TOXICOL SCI
J2 - Toxicol.Sci.
J3 - Toxicological Sciences
VL - 110
IS - 1
SP - 235
EP - 243
ER -
TY - JOUR
A1 - Harrill, A H
A1 - Watkins, P B
A1 - Su, S
A1 - Ross, P K
A1 - Harbourt, D E
A1 - Stylianou, I M
A1 - Boorman, G A
A1 - Russo, M W
T1 - Mouse population-guided resequencing reveals that variants in CD44 contribute to acetaminophen-induced liver injury in humans.
Y1 - 2009/09/
N1 - R832720
JF - GENOME RESEARCH
J1 - GENOME RES
VL - 19
IS - 9
SP - 1507
EP - 1515
ER -
TY - JOUR
A1 - Harrill, J A
A1 - Li, Z
A1 - Wright, F A
A1 - Radio, N M
A1 - Mundy, W R
A1 - Tornero-Velez, R
A1 - Crofton, K M
T1 - Transcriptional response of rat frontal cortex following acute in vivo exposure to the pyrethroid insecticides permethrin and deltamethrin.
Y1 - 2008/11/18
N1 - R832720
VL - 9
SP - 546
ER -
TY - JOUR
A1 - Hu, J
A1 - Wright, F A
A1 - Zou, F
T1 - Estimation of expression indexes for oligonucleotide arrays using the singular value decomposition.
Y1 - 2006/03/
N1 - R832720
JF - JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION
J1 - J AM STAT ASSOC
VL - 101
IS - 473
SP - 41
EP - 50
ER -
TY - JOUR
A1 - Hu, J
A1 - Wright, F A
T1 - Assessing differential gene expression with small sample sizes in oligonucleotide arrays using a mean-variance model.
Y1 - 2007/03/
N1 - R832720
JF - BIOMETRICS
J1 - BIOMETRICS
VL - 63
IS - 1
SP - 41
EP - 49
ER -
TY - JOUR
A1 - Judson, R
A1 - Elloumi, F
A1 - Setzer, W R
A1 - Li, Z
A1 - Shah, I
T1 - A comparison of machine learning algorithms for chemical toxicity classification using a simulated multi-scaledData model.
Y1 - 2008/05/19
N1 - R832720
VL - 9
IS - 241
SP - 256
ER -
TY - JOUR
A1 - Li, Z
A1 - Wright, F A
A1 - Royland, J
T1 - Age-dependent variability in gene expression in male Fischer 344 rat retina.
Y1 - 2009/01/18
N1 - R832720
VL - 107
IS - 1
SP - 281
EP - 292
ER -
TY - JOUR
A1 - Liu, Y
A1 - Hayes, D
A1 - Nobel, A
A1 - Marron, J
T1 - Statistical Significance of Clustering for High-Dimension, Low–Sample Size Data
Y1 - 2012//01
N1 - R832720
JF - JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION
J1 - J AM STAT ASSOC
VL - 103
IS - 483
SP - 1281
EP - 1293
ER -
TY - JOUR
A1 - Low, Y S
A1 - Sedykh, A Y
A1 - Rusyn, I
A1 - Tropsha, A
T1 - Integrative approaches for predicting in vivo effects of chemicals from their structural descriptors and the results of short-term biological assays.
Y1 - 2014//
N1 - R833825
N1 - R832720
N1 - R835166
VL - 14
IS - 11
SP - 1356
EP - 1364
ER -
TY - JOUR
A1 - Muratov, E N
A1 - Varlamova, E V
A1 - Artemenko, A G
A1 - Khristova, T
A1 - Kuz'min, V E
A1 - Makarov, V A
A1 - Riabova, O B
A1 - Wutzler, P
A1 - Schmidtke, M
T1 - QSAR analysis of (biphenyloxy)propyl isoxazoles: agents against coxsackievirus B3.
Y1 - 2011/01/
N1 - R833825
N1 - R832720
JF - FUTURE MEDICINAL CHEMISTRY
VL - 3
IS - 1
SP - 15
EP - 27
ER -
TY - JOUR
A1 - Muratov, E N
A1 - Varlamova, E V
A1 - Artemenko, A G
A1 - Polishchuk, P G
A1 - Kuz'min, V E
T1 - Existing and developing approaches for QSAR analysis of mixtures.
Y1 - 2012/04/
N1 - R833825
N1 - R832720
JF - MOLECULAR INFORMATICS
VL - 31
IS - 3-4
SP - 202
EP - 221
ER -
TY - JOUR
A1 - Muratov, E N
A1 - Varlamova, E V
A1 - Artemenko, A G
A1 - Polishchuk, P G
A1 - Nikolaeva-Glomb, L
A1 - Galabov, A S
A1 - Kuz'min, V E
T1 - QSAR analysis of poliovirus inhibition by dual combinations of antivirals.
Y1 - 2013/10/
N1 - R833825
N1 - R832720
JF - STRUCTURAL CHEMISTRY
J1 - STRUCT CHEM
VL - 24
IS - 5
SP - 1665
EP - 1679
ER -
TY - JOUR
A1 - Nadler, J J
A1 - Zou, F
A1 - Huang, H
A1 - Moy, S S
A1 - Lauder, J
A1 - Crawley, J N
A1 - Threadgill, D W
A1 - Wright, F A
A1 - Magnuson, T R
T1 - Large-scale gene expression differences across brain regions and inbred strains correlates with a behavioral phenotype.
Y1 - 2006/11/
N1 - R832720
JF - GENETICS
J1 - GENETICS
VL - 174
IS - 3
SP - 1229
EP - 1236
ER -
TY - JOUR
A1 - Pogribny, I P
A1 - Tryndyak, V P
A1 - Bagnyukova, T V
A1 - Melnyk, S
A1 - Montgomery, B
A1 - Ross, S A
A1 - Latendresse, J R
A1 - Rusyn, I
A1 - Beland, F A
T1 - Hepatic epigenetic phenotype predetermines individual susceptibility to hepatic steatosis in mice fed a lipogenic methyl-deficient diet.
Y1 - 2009/07/
N1 - R832720
JF - JOURNAL OF HEPATOLOGY
J1 - J HEPATOL
VL - 51
IS - 1
SP - 176
EP - 186
ER -
TY - JOUR
A1 - Polishchuk, P G
A1 - Kuz'min, V E
A1 - Artemenko, A G
A1 - Muratov, E N
T1 - Universal approach for structural interpretation of QSAR/QSPR models.
Y1 - 2013/10/
N1 - R832720
JF - MOLECULAR INFORMATICS
VL - 32
IS - 9-10
SP - 843
EP - 853
ER -
TY - JOUR
A1 - Roberts, A
A1 - Pardo-Manuel, D
A1 - Wang, W
A1 - McMillan, L
A1 - Threadgill, D W
T1 - The polymorphism architecture of mouse genetic resources elucidated using genome-wide resequencing data: implications for QTL discovery and systems genetics.
Y1 - 2007/07/
N1 - R832720
JF - MAMMALIAN GENOME
J1 - MAMM GENOME
VL - 18
IS - 6-7
SP - 473
EP - 481
ER -
TY - JOUR
A1 - Scharph, R
A1 - Tjelmeland, H
A1 - Parmigiani, G
A1 - Nobel, A
T1 - A Bayesian Model for Cross-Study Differential Gene Expression
Y1 - 2012/01/01
N1 - R832720
JF - JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION
J1 - J AM STAT ASSOC
VL - 104
IS - 488
SP - 1295
EP - 1310
ER -
TY - JOUR
A1 - Tetko, I V
A1 - Sushko, I
A1 - Pandey, A K
A1 - Zhu, H
A1 - Tropsha, A
A1 - Papa, E
A1 - Öberg, T
A1 - Todeschini, R
A1 - Fourches, D
A1 - Varnek, A
T1 - Critical Assessment of QSAR Models of Environmental Toxicity against Tetrahymena pyriformis:Focusing on Applicability Domain and Overfitting by Variable Selection.
Y1 - 2008/09/
N1 - R832720
VL - 48
IS - 9
SP - 1733
EP - 1746
ER -
TY - JOUR
A1 - Tropsha, A
A1 - Golbraikh, A
T1 - Predictive QSAR modeling workflow, model applicability domains, and virtual screening.
Y1 - 2007//
N1 - R832720
JF - CURRENT PHARMACEUTICAL DESIGN
J1 - CURR PHARM DESIGN
VL - 13
IS - 34
SP - 3494
EP - 3504
ER -
TY - JOUR
A1 - Woods, C G
A1 - Kosyk, O
A1 - Bradford, B U
A1 - Ross, P K
A1 - Burns, A M
A1 - Cunningham, M L
A1 - Qu, P
A1 - Ibrahim, J G
A1 - Rusyn, I
T1 - Time course investigation of PPARα- and Kupffer cell-dependent effects of WY-14,643 in mouse liver using microarray gene expression.
Y1 - 2007/12/
N1 - R832720
JF - TOXICOLOGY AND APPLIED PHARMACOLOGY
J1 - TOXICOL APPL PHARM
J2 - Toxicol.Appl.Pharmacol.
J3 - Toxicol Appl Pharmacol
J4 - Toxicology and Applied Pharmacology
VL - 225
IS - 3
SP - 267
EP - 277
ER -
TY - JOUR
A1 - Woods, C G
A1 - Vanden, H
A1 - Rusyn, I
T1 - Genomic profiling in nuclear receptor-mediated toxicity.
Y1 - 2007/06/
N1 - R832720
JF - TOXICOLOGIC PATHOLOGY
J1 - TOXICOL PATHOL
VL - 35
IS - 4
SP - 474
EP - 494
ER -
TY - JOUR
A1 - Wright, F A
A1 - Huang, H
A1 - Guan, X
A1 - Gamiel, K
A1 - Jeffries, C
A1 - Barry, W T
A1 - Pardo-Manuel, D
A1 - Sullivan, P F
A1 - Wilhelmsen, K C
A1 - Zou, F
T1 - Simulating association studies: a data-based resampling method for candidate regions or whole genome scans.
Y1 - 2007/10/1
N1 - R832720
JF - BIOINFORMATICS
J1 - BIOINFORMATICS
J2 - LECT NOTES COMPUT SC
J3 - METHOD BIOCHEM ANAL
VL - 23
IS - 19
SP - 2581
EP - 2588
ER -
TY - JOUR
A1 - Zhu, H
A1 - Tropsha, A
A1 - Fourches, D
A1 - Varnek, A
A1 - Papa, E
A1 - Gramatica, P
A1 - Oberg, T
A1 - Dao, P
A1 - Cherkasov, A
A1 - Tetko, I
T1 - Combinatorial QSAR Modeling of Chemical Toxicants Tested against Tetrahymena pyriformis.
Y1 - 2008/04/
N1 - R832720
VL - 48
IS - 4
SP - 766
EP - 784
ER -
TY - JOUR
A1 - Zhu, H
A1 - Rusyn, I
A1 - Richard, A
A1 - Tropsha, A
T1 - Use of cell viability assay data improves the prediction accuracy of conventional quantitative structure-activity relationship models of animal carcinogenicity.
Y1 - 2008/04/
N1 - R833825
N1 - R832720
VL - 116
IS - 4
SP - 506
EP - 513
ER -
TY - JOUR
A1 - Zhu, H
A1 - Ye, L
A1 - Richard, A
A1 - Golbraikh, A
A1 - Wright, F A
A1 - Rusyn, I
A1 - Tropsha, A
T1 - A novel two-step hierarchical quantitative structure-activity relationship modeling work flow for predicting acute toxicity of chemicals in rodents.
Y1 - 2009/08/
N1 - R833825
N1 - R832720
JF - ENVIRONMENTAL HEALTH PERSPECTIVES
J1 - ENVIRON HEALTH PERSP
J2 - Environ.Health Perspect.
J3 - Environ Health Perspect
J4 - Environmental Health Perspectives
VL - 117
IS - 8
SP - 1257
EP - 1264
ER -
TY - JOUR
A1 - Zhu, H
A1 - Martin, T M
A1 - Ye, L
A1 - Sedykh, A
A1 - Young, D M
A1 - Tropsha, A
T1 - Quantitative structure-activity relationship modeling of rat acute toxicity by oral exposure.
Y1 - 2009/12/
N1 - R833825
N1 - R832720
JF - CHEMICAL RESEARCH TOXICOLOGY
VL - 22
IS - 12
SP - 1913
EP - 1921
ER -
TY - CONF
A1 - Bradford, B U
A1 - Han, J
A1 - Kosyk, O
A1 - Shymonyak, S
A1 - Winnike, J
A1 - Kono, H
A1 - O’Connell, T
A1 - Rusyn, I
T1 - Metabolomic analysis of urine and liver after chronic alcohol treatment in C57BL/6J mice.
Y1 - 2007//
N1 - R832720
ER -
TY - CONF
A1 - Bradford, B U
A1 - Kim, S
A1 - Kosyk, O
A1 - Grimes, J
A1 - O’Connell, T
A1 - Rusyn, I
T1 - NMR and microarray based analysis of mouse liver following exposure to trichloroethylene.
Y1 - 2010/03/7-10
N1 - R832720
ER -
TY - CONF
A1 - Campbell, J
A1 - Clewell, H
A1 - Kim, S
A1 - Collins, L
A1 - Kosyk, O
A1 - Rusyn, I
T1 - Monte Carlo analysis of TCE metabolism across a panel of inbred mouse strains.
Y1 - 2010/03/7-10
N1 - R832720
ER -
TY - CONF
A1 - Chang, Y
A1 - Zou, F
A1 - Wright, F A
T1 - Approximate Bayesian approaches for quantitative trait loci estimation.
Y1 - 2007//
N1 - R832720
ER -
TY - CONF
A1 - Chang, Y
A1 - Zou, F
A1 - Wright, F A
T1 - Approximate Bayesian approaches for quantitative trait loci estimation.
Y1 - 2007//
N1 - R832720
ER -
TY - CONF
A1 - DeSimone,
A1 - Harbourt, D
A1 - Boysen, G
A1 - Collins, L
T1 - Multi-strain study of trichoroethylene toxicity in mice.
Y1 - 2006/12/10-12
N1 - R832720
ER -
TY - CONF
A1 - Dix, D
A1 - Martin, M T
A1 - Li, Z
A1 - Judson, R
A1 - Houck, K A
T1 - Development of EPA’s ToxCast program for prioritizing the toxicity testing of environmental chemicals.
Y1 - 2007//
N1 - R832720
ER -
TY - CONF
A1 - Dix, D
A1 - Judson, R
A1 - Kavlock, R
A1 - Li, Z
A1 - Martin, M
A1 - Richard, A
A1 - Setzer, W
A1 - Houck, K
T1 - EPA’s ToxCast program for predicting hazard and prioritizing toxicity testing of environmental chemicals.
Y1 - 2007//
N1 - R832720
ER -
TY - CONF
A1 - Easterling, M
A1 - Tropsha, A
A1 - Ye, L
A1 - Pirone, J
A1 - Zhu, H
A1 - Martin, T
A1 - Moudgal, C
T1 - Quantitative structure toxicity relationships (QSTR) models for predicting acute/sub-acute and sub-chronic/chronic adverse effect levels.
Y1 - 2009/03/15-19
N1 - R833825
N1 - R832720
ER -
TY - CONF
A1 - Elloumi, F
A1 - Li, Z
A1 - Judson, R
T1 - Analysis for MAQC toxicogenomics datasets.
Y1 - 2008/03/24-26
N1 - R832720
ER -
TY - CONF
A1 - Elloumi, F
A1 - Judson, R
A1 - Dix, D
A1 - Shah, I
A1 - Knudsen, T
A1 - Reif, D
A1 - Singh, A
A1 - Li, Z
A1 - Wright, F A
T1 - Response profiles from toxicogenomics data.
Y1 - 2009/03/15-19
N1 - R832720
ER -
TY - CONF
A1 - Gatti, D M
A1 - Shabalin, A A
A1 - Rusyn, I
A1 - Wright, F A
A1 - Nobel, A B
T1 - Fast association mapping using summation trees.
Y1 - 2008//
N1 - R832720
ER -
TY - CONF
A1 - Gatti, D
A1 - Maki, A
A1 - Chesler, E J
A1 - Kirova, R
T1 - Examination of genetic networks that regulate gene expression in liver using complex trait analysis.
Y1 - 2007/03/25-29
N1 - R832720
ER -
TY - CONF
A1 - Golbraikh, A
A1 - Zhu, H
A1 - Ye, L
A1 - Wang-Bell, M
A1 - Tang, H
A1 - Tropsha, A
T1 - QSAR/QSTR analysis of imbalanced datasets using k-Nearest Neighbors approach.
Y1 - 2007//
N1 - R832720
ER -
TY - CONF
A1 - Golbraikh, A
A1 - Zhu, H
A1 - Ye, L
A1 - Wang-Bell, M
A1 - Tang, H
A1 - Tropsha, A
T1 - Automatic detection of outliers prior to QSAR studies.
Y1 - 2008/03/
N1 - R832720
ER -
TY - CONF
A1 - Grimes, J
A1 - Kim, S
A1 - O'Connell, T
A1 - Bradford, B
A1 - Rusyn, I
T1 - Analysis of trichloroethylene metabolism in a genetically diverse panel of inbred mouse strains.
Y1 - 2009/08/30-2
N1 - R832720
ER -
TY - CONF
A1 - Han, J
A1 - Harbourt, D
A1 - Danell, R M
A1 - Borchers, C H
T1 - High-throughput metabolite profiling of serum from trichloroethylene-exposed mice by direct infusion FTICR-MS.
Y1 - 2006/12/10-12
N1 - R832720
ER -
TY - CONF
A1 - Hatcher, S
A1 - Kosyk, O
A1 - Ross, P
A1 - Wright, F A
A1 - Schwartz, J
A1 - Dix, D
A1 - Rusyn, I
T1 - In vitro screening for chemical toxicity in a genetically-diverse human model system.
Y1 - 2009/05/14-15
N1 - R832720
ER -
TY - CONF
A1 - Hege, A
A1 - Ross, P
A1 - Su, S
A1 - Stylianou, I
T1 - Toxicogenetic dimension in studies of the mechanisms of liver injury.
Y1 - 2006/05/16-18
N1 - R832720
ER -
TY - CONF
A1 - Hege, A
A1 - Ross, P
A1 - Balletta, L
A1 - Bradford, B
T1 - Cross-species association mapping identifies genetic risk factors for liver toxicity.
Y1 - 2007/03/29
N1 - R832720
ER -
TY - CONF
A1 - Hege, A
A1 - Ross, P K
A1 - Threadgill, D W
A1 - Rusyn, I
T1 - Phenotypic anchoring of gene expression data from acetaminophen hepatotoxicity studies in the mouse model of the human population reveals biomarkers of response.
Y1 - 2008//
N1 - R832720
ER -
TY - CONF
A1 - Kavlock, R J
A1 - Dix, D
A1 - Judson, R
A1 - Li, Z
A1 - Martin, M
A1 - Richard, A
A1 - Setzer, W
A1 - Houck, K
T1 - U.S. EPA’s ToxCast program for predicting hazard and prioritizing toxicity testing of environmental chemicals.
Y1 - 2007//
N1 - R832720
ER -
TY - CONF
A1 - Kim, S
A1 - DeSimone, M C
A1 - Harbourt, D
A1 - Boysen, G
A1 - Collins, L
A1 - Waidyanatha, S
A1 - Bradford, B U
A1 - Threadgill, D W
A1 - Rusyn, I
T1 - Analysis of trichloroethylene metabolism in a genetically diverse panel of mouse inbred strains.
Y1 - 2008//
N1 - R832720
ER -
TY - CONF
A1 - Lee, K
A1 - Stotts, D
T1 - Using aspects to create interconnected analysis tool networks.
Y1 - 2008/05/6-8
N1 - R832720
ER -
TY - CONF
A1 - Lee, M H
A1 - Rusyn, I
A1 - Threadgill, D W
A1 - Marron, J S
T1 - Visualization of features in curve estimates and application to genetic loci mapping.
Y1 - 2006/08/6-10
N1 - R832720
ER -
TY - CONF
A1 - Li, Z
A1 - Wright, F A
A1 - Royland, J E
T1 - Age-dependent heterogeneity of gene expression in Fisher 344 rat retina.
Y1 - 2007//
N1 - R832720
ER -
TY - CONF
A1 - Li, Z
A1 - Wright, F A
T1 - Discovering relevant pathways in microarray experiments-a tutorial on honest testing methods.
Y1 - 2007//
N1 - R832720
ER -
TY - CONF
A1 - Li, Z
A1 - Wright, F A
A1 - Royland, J E
T1 - Significance analysis of variation change in gene expression studies.
Y1 - 2007//
N1 - R832720
ER -
TY - CONF
A1 - Li, Z
A1 - Wright, F A
A1 - Elloumi, F
T1 - Chemical toxicity prediction for ToxCast Phase I.
Y1 - 2008//
N1 - R832720
ER -
TY - CONF
A1 - Li, Z
A1 - Rusyn, I
A1 - Wright, F A
T1 - Dose-response pathway analysis for gene expression microarrays.
Y1 - 2009/05/11-13
N1 - R832720
ER -
TY - CONF
A1 - Li, Z
A1 - Rusyn, I
A1 - Wright, F A
T1 - Dose-response pathway analysis for gene expression microarrays.
Y1 - 2010/03/7-10
N1 - R832720
ER -
TY - CONF
A1 - Liu, J
A1 - Chang, Y
A1 - Zou, F
A1 - Wright, F A
T1 - A fast Bayesian method for eQTL linkage analysis in experimental crosses.
Y1 - 2007//
N1 - R832720
ER -
TY - CONF
A1 - Martinez, S
A1 - Bradford, B
A1 - Kaiser, R
A1 - Soldatow, V
A1 - Amaral, K
A1 - Ferguson, S
A1 - Black, C
A1 - LecLuyse, E
A1 - Rusyn, I
T1 - Development of the in vitro toxicogenetic models for hepatotoxicity.
Y1 - 2009/03/15-19
N1 - R833825
N1 - R832720
ER -
TY - CONF
A1 - Martinez, S
A1 - Bradford, B
A1 - Kaiser, R
A1 - Soldatow, V
T1 - Development of in vitro toxicogenetic models for hepatotoxicity.
Y1 - 2009/05/14-15
N1 - R832720
ER -
TY - CONF
A1 - O'Shea, S H
A1 - Schwarz, J
A1 - Kosyk, O
A1 - Ross, P K
A1 - Wright, F A
A1 - Tice, R R
A1 - Dix, D J
A1 - Rusyn, I
T1 - In vitro screening for population variability in chemical toxicity.
Y1 - 2010/03/7-10
N1 - R833825
N1 - R832720
ER -
TY - CONF
A1 - Rodgers, A D
A1 - Zhu, H
A1 - Rusyn, I
A1 - Tropsha, A
T1 - QSAR Modeling of Human Liver Adverse Effects Database Using kNN method.
Y1 - 2008/03/
N1 - R832720
ER -
TY - CONF
A1 - Ross, P L
A1 - Woods,
A1 - CG,
A1 - Bradford, B U
A1 - Kosyk, O
A1 - Rusyn, I
T1 - Time-course comparison of gene expression signatures of xenobiotic activators of car and PPAR-alpha in mouse liver.
Y1 - 2008//
N1 - R832720
ER -
TY - CONF
A1 - Rusyn, I
T1 - Genetical genomics and liver toxicology.
Y1 - 2008//
N1 - R832720
ER -
TY - CONF
A1 - Rusyn, I
T1 - Use of inbred mouse strains to model genetic variation in susceptibility to drug-induced liver injury.
Y1 - 2008//
N1 - R832720
ER -
TY - CONF
A1 - Sedykh, A
A1 - Zhu, H
A1 - Tang, H
A1 - Zhang, L
A1 - Richard, A
A1 - Rusyn, I
A1 - Tropsha, A
T1 - Using in vitro dose-response profiles to enhance QSAR modeling of in vivo toxicity.
Y1 - 2010/03/7-10
N1 - R833825
N1 - R832720
ER -
TY - CONF
A1 - Tropsha, A
T1 - Combinational QSAR modeling of chemical toxicants tested against Tetrahymena pyriformis.
Y1 - 2007//
N1 - R832720
ER -
TY - CONF
A1 - Tropsha, A
A1 - Golbraikh, A
A1 - Zhu, H
T1 - Applicability domains, space coverage, and predictive power of QSAR models.
Y1 - 2008/03/
N1 - R832720
ER -
TY - CONF
A1 - Wang, K
A1 - Richard, A
A1 - Rusyn, I
A1 - Tropsha, A
T1 - Toxico-cheminformatics and QSPR modeling of the carcinogenic potency database.
Y1 - 2007//
N1 - R832720
ER -
TY - CONF
A1 - Winnike, J H
A1 - Li, Z
A1 - Wright, F A
A1 - Macdonald, J M
A1 - O’Connell, T M
A1 - Watkins, P B
T1 - Pharmaco-metabolomics and the prediction of hepatotoxicity.
Y1 - 2007//
N1 - R832720
ER -
TY - CONF
A1 - Wright, F A
A1 - Nobel, A B
A1 - Barry, W T
T1 - Hypothesis tests of functional categories in microarray data–a new approach.
Y1 - 2007//
N1 - R832720
ER -
TY - CONF
A1 - Wright, F A
A1 - Li, Z
A1 - Huang, H W
A1 - Ghosh, A
T1 - Prediction of in vivo toxicity endpoints from ToxCast Phase I data using a variety of machine learning approaches.
Y1 - 2009/05/14-15
N1 - R832720
ER -
TY - CONF
A1 - Ye, L
A1 - Zhu, H
A1 - Golbraikh, A
A1 - Tropsha, A
T1 - Enhanced kNN-QSAR modeling of aquatic toxicity of diverse organic compounds tested by fathead minnow.
Y1 - 2007//
N1 - R832720
ER -
TY - CONF
A1 - Ye, L
A1 - Zhu, H
A1 - Golbraikh, A
A1 - Tropsha, A
T1 - Establishing a balance between prediction accuracy and applicability domain of QSAR models.
Y1 - 2008/03/
N1 - R832720
ER -
TY - CONF
A1 - Zhang, L
A1 - Zhu, H
A1 - Rusyn, I
A1 - Judson, R
A1 - Dix, D
A1 - Houck, K
A1 - Martin, M
A1 - Richard, A
A1 - Kavlock, R
A1 - Tropsha, A
T1 - Cheminformatics analysis of EPA ToxCast chemical libraries to identify domains of applicability for predictive toxicity models and prioritize compounds for toxicity testing.
Y1 - 2009/03/15-19
N1 - R833825
N1 - R832720
ER -
TY - CONF
A1 - Zhang, L
A1 - Zhu, H
A1 - Rusyn, I
A1 - Judson, R
A1 - Dix, D
A1 - Houck, K
A1 - Martin, M
A1 - Richard, A
A1 - Kavlock, R
A1 - Tropsha, A
T1 - Cheminformatics analysis of EPA ToxCast chemical libraries to develop predictive toxicity models and prioritize compounds for in vivo toxicity testing.
Y1 - 2009/05/14-15
N1 - R832720
ER -
TY - CONF
A1 - Zhao, N
A1 - Gatti, D M
A1 - Rusyn, I
T1 - Genome-level analysis of genetic regulation of sex-specific gene expression in mouse liver.
Y1 - 2009/03/15-19
N1 - R833825
N1 - R832720
ER -
TY - CONF
A1 - Zhu, H
A1 - Wang, K
A1 - Rusyn, I
A1 - Richard, A
A1 - Tropsha, A
T1 - The utilization of NTP-HTS data in predictive ADME/tox modeling.
Y1 - 2007/03/25-29
N1 - R832720
ER -
TY - CONF
A1 - Zhu, H
A1 - Tropsha, A
A1 - Fourches, D
A1 - Varnek, A
A1 - Papa, E
A1 - Gramatica, P
A1 - Oberg, T
A1 - Dao, P
A1 - Cherkasov, A
A1 - Tetko, I V
T1 - Combinational QSAR modeling of chemical toxicants tested against Tetrahymena pyriformis.
Y1 - 2007//
N1 - R832720
ER -
TY - CONF
A1 - Zhu, H
A1 - Tropsha, A
A1 - Fourches, D
A1 - Varnek, A
A1 - Papa, E
A1 - Gramatica, P
A1 - Oberg, T
A1 - Dao, P
A1 - Cherkasov, A
A1 - Tetko, I V
T1 - Combinational QSAR modeling of chemical toxicants tested against Tetrahymena pyriformis.
Y1 - 2007//
N1 - R832720
ER -
TY - CONF
A1 - Zhu, H
A1 - Rusyn, I
A1 - Richard, A
A1 - Tropsha, A
T1 - The utilization of NTP-HTS data in predictive ADME/tox modeling.
Y1 - 2007//
N1 - R832720
ER -
TY - CONF
A1 - Zhu, H
A1 - Ye, L
A1 - Rusyn, I
A1 - Richard, A
A1 - Golbraikh, A
A1 - Tropsha, A
T1 - Two-step quantitative structure activity relationship modeling of in vivo toxicity using in vitro cytotoxicity data.
Y1 - 2008/03/
N1 - R832720
ER -
TY - CONF
A1 - Zhu, H
A1 - Martin, T M
A1 - Ye, L
A1 - Young, D M
A1 - Tropsha, A
T1 - Combinatorial QSAR modeling of rat acute toxicity by oral exposure.
Y1 - 2009/03/15-19
N1 - R833825
N1 - R832720
ER -
TY - CONF
A1 - Zhu, H
A1 - Sedykh, A
A1 - Zhang, L
A1 - Rusyn, I
A1 - Tropsha, A
T1 - Using ToxCast cell-viability and gene-expression assays as biological descriptors in QSAR modeling of animal toxicity endpoints.
Y1 - 2009/05/14-15
N1 - R833825
N1 - R832720
ER -
TY - CONF
A1 - Liu, J
A1 - Paulsen, S
A1 - Sun, X
A1 - Wang, W
A1 - Nobel, A
A1 - Prins, J
T1 - Mining approximate frequent itemset in the presence of noise: algorithm and analysis.
Y1 - 2006/04/20-22
N1 - R832720
ER -
TY - CONF
A1 - Liu, J
A1 - Zhang, Q
A1 - Wang, W
A1 - McMillan, L
A1 - Prins, J
T1 - Clustering pair-wise dissimilarity data into partially ordered sets.
Y1 - 2006/08/20-23
N1 - R832720
ER -
TY - CONF
A1 - Liu, J
A1 - Zhang, Q
A1 - Wang, W
A1 - McMillan, L
A1 - Prins, J
T1 - PoClustering: lossless clustering of dissimilarity data.
Y1 - 2007/04/26-28
N1 - R832720
ER -
TY - CONF
A1 - Pan, F
A1 - Roberts, A
A1 - McMillan, L
A1 - Pardo-Manuel, D
A1 - Threadgill, D
A1 - Wang, W
T1 - Sample selection for maximal diversity.
Y1 - 2007/10/28-31
N1 - R832720
ER -
TY - CONF
A1 - Roberts, A
A1 - McMillan, L
A1 - Wang, W
A1 - Parker, J
A1 - Rusyn, I
A1 - Threadgill, D
T1 - Inferring missing genotypes in large SNP panels using fast nearest-neighbor searches over sliding windows.
Y1 - 2007/07/21-25
N1 - R832720
VL - 23
IS - 13
SP - i401
EP - i407
ER -
TY - CONF
A1 - Wang, W
A1 - Zhang, X
A1 - Pan, F
T1 - CARE: finding local linear correlations in high dimensional data.
Y1 - 2008/04/7-12
N1 - R832720
ER -
TY - CONF
A1 - Zhang, M
A1 - Wang, W
A1 - Liu, J
T1 - Mining approximate order preserving clusters in the presence of noise.
Y1 - 2008/04/7-12
N1 - R832720
ER -
TY - CONF
A1 - Zhang, X
A1 - Wang, W
T1 - Mining coherent patterns from heterogeneous microarray data.
Y1 - 2006/11/6-11
N1 - R832720
ER -
TY - CONF
A1 - Zhang, X
A1 - Wang, W
A1 - Huan, J
T1 - On demand phenotype ranking through subspace clustering.
Y1 - 2007/04/26-28
N1 - R832720
ER -
TY - CONF
A1 - Zhang, X
A1 - Wang, W
T1 - An efficient algorithm for mining coherent patterns from heterogeneous microarrays.
Y1 - 2007/07/9-11
N1 - R832720
ER -