Grantee Research Project Results
Publications Details for Grant Number R828676
A Western Center for Estuarine Indicators Research which will Develop Indicators of Wetlands Ecosystem Health
RFA:
Environmental Indicators in the Estuarine Environment Research Program (2000)
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| Reference Type | Reference Title | Journal | Author | Citation | Progress Report Year | Document Sources |
|---|---|---|---|---|---|---|
| Book Chapter | Trematode parasites as estuarine indicators: opportunities, applications, and comparisons with conventional community approaches. | None | Huspeni TC, Hechinger RF, Lafferty KD | Huspeni TC, Hechinger RF, Lafferty KD. Trematode parasites as estuarine indicators:opportunities, applications, and comparisons with conventional community approaches. In: Bortone SA, ed. Estuarine Indicators. Boca Raton, FL: CRC Press, 2004, Chapter 19, pp. 297-314. |
R828676 (Final) R828676C001 (2004) R828676C003 (Final) |
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| Book Chapter | Food webs and parasites in a salt marsh ecosystem. | None | Lafferty KD, Hechinger RF, Shaw JC, Whitney K, Kuris AM | Lafferty KD, Hechinger RF, Shaw JC, Whitney K, Kuris AM. Food webs and parasites in a salt marsh ecosystem. In: Collinge SK, Ray C, eds. Disease Ecology: Community Structure and Pathogen Dynamics. Oxford, England: Oxford University Press, 2006, Chapter 9, pp. 119-134. |
R828676 (Final) |
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| Dissertation/Thesis | Biomarkers of cadmium exposure in the wetland plant Spartina foliosa: a laboratory experiment with field validation. | None | Norris SA | Norris SA. Biomarkers of cadmium exposure in the wetland plant Spartina foliosa: a laboratory experiment with field validation. M.S. Thesis. Department of Soils and Biogeochemistry, University of California-Davis, Davis, CA, 2005. |
R828676 (Final) R828676C003 (Final) |
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| Dissertation/Thesis | Using an integrated approach to evaluate apoptosis as a biomarker response in estuarine fishes. | None | Rose WL | Rose WL. Using an integrated approach to evaluate apoptosis as a biomarker response in estuarine fishes. Ph.D. Dissertation, Bodega Marine Laboratory, University of California-Davis, Davis, CA, February 2005. |
R828676 (Final) R828676C002 (2004) R828676C002 (Final) |
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| Journal Article | Integrating contaminant responses in indicator saltmarsh species. | MARINE ENVIRONMENTAL RESEARCH | Anderson SL, Cherr GN, Morgan SG, Vines CA, Higashi RM, Bennett WA, Rose WL, Brooks AJ, Nisbet RM | Anderson SL, Cherr GN, Morgan SG, Vines CA, Higashi RM, Bennett WA, Rose WL, Brooks AJ, Nisbet RM. Integrating contaminant responses in indicator saltmarsh species. Marine Environmental Research 2006;62(Suppl 1):S317-S321. |
R828676 (Final) R828676C002 (Final) |
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| Journal Article | Effects of ciprofloxacin on salt marsh sediment microbial communities. | THE ISME JOURNAL | Cordova-Kreylos AL, Scow KM | Cordova-Kreylos AL, Scow KM. Effects of ciprofloxacin on salt marsh sediment microbial communities. The ISME Journal 2007;1(7):585-595. |
R828676 (Final) |
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| Journal Article | Diversity, composition, and geographical distribution of microbial communities in California salt marsh sediments. | APPLIED AND ENVIRONMENTAL MICROBIOLOGY | Corrdova-Kreylos AL, Cao Y, Green PG, Hwang H-M, Kuivila KM, LaMontagne MG, Van De Werfhorst LC, Holden PA, Scow KM | Cordova-Kreylos AL, Cao Y, Green PG, Hwang H-M, Kuivila KM, LaMontagne MG, Van De Werfhorst LC, Holden PA, Scow KM. Diversity, composition, and geographical distribution of microbial communities in California salt marsh sediments. Applied and Environmental Microbiology 2006;72(5):3357-3366. |
R828676 (Final) R828676C003 (Final) |
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| Journal Article | A comparative study of culture-independent, library-independent genotypic methods of fecal source tracking. | JOURNAL OF WATER AND HEALTH | Field KG, Chern EC, Dick LK, Fuhrman J, Griffith J, Holden PA, LaMontagne MG, Le J, Olson B, Simonich MT | Field KG, Chern EC, Dick LK, Fuhrman J, Griffith J, Holden PA, LaMontagne MG, Le J, Olson B, Simonich MT. A comparative study of culture-independent, library-independent genotypic methods of fecal source tracking. Journal of Water and Health 2003;1(4):181-194. |
R827639 (Final) R828676 (Final) R828676C003 (Final) |
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| Journal Article | Growth autocorrelation and animal size variation. | ECOLOGY LETTERS | Fujiwara M, Kendall BE, Nisbet RM | Fujiwara M, Kendall BE, Nisbet RM. Growth autocorrelation and animal size variation. Ecology Letters 2004;7(2):106-113. |
R828676 (2003) R828676 (2004) R828676 (Final) |
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| Journal Article | Analysis of size trajectory data using an energetic-based growth model. | ECOLOGY | Fujiwara M, Kendall BE, Nisbet RM, Bennett WA | Fujiwara M, Kendall BE, Nisbet RM, Bennett WA. Analysis of size trajectory data using an energetic-based growth model. Ecology 2005;86(6):1441-1451. |
R828676 (Final) R828676C001 (2004) |
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| Journal Article | Resource allocation, hyperphagia and compensatory growth. | BULLETIN OF MATHEMATICAL BIOLOGY | Gurney WC, Nisbet RM | Gurney WSC, Nisbet RM. Resource allocation, hyperphagia and compensatory growth. Bulletin of Mathematical Biology 2004;66(6):1731-1753. |
R828676 (2004) R828676 (Final) |
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| Journal Article | Resource allocation, hyperphagia, and compensatory growth in juveniles. | ECOLOGY | Gurney WSC, Jones W, Veitch AR, Nisbet RM | Gurney WSC, Jones W, Veitch AR, Nisbet RM. Resource allocation, hyperphagia, and compensatory growth in juveniles. Ecology 2003;84(10):2777-2787. |
R828676 (Final) |
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| Journal Article | Host diversity begets parasite diversity: bird final hosts and trematodes in snail intermediate hosts. | PROCEEDINGS OF THE ROYAL SOCIETY B: BIOLOGICAL SCIENCES | Hechinger RF, Lafferty KD | Hechinger RF, Lafferty KD. Host diversity begets parasite diversity: bird final hosts and trematodes in snail intermediate hosts. Proceedings of the Royal Society B–Biological Sciences 2005;272(1567):1059-1066. |
R828676 (Final) R828676C001 (2004) R828676C003 (Final) |
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| Journal Article | Using larval trematodes that parasitize snails to evaluate a saltmarsh restoration project. | ECOLOGICAL APPLICATIONS | Huspeni TC, Lafferty KD | Huspeni TC, Lafferty KD. Using larval trematodes that parasitize snails to evaluate a saltmarsh restoration project. Ecological Applications 2004;14(3):795-804. |
R828676 (Final) R828676C001 (2002) R828676C003 (Final) |
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| Journal Article | Tidal salt marsh sediment in California, USA. Part 1: Occurrence and sources of organic contaminants. | CHEMOSPHERE | Hwang H-M, Green PG, Young TM | Hwang H-M, Green PG, Young TM. Tidal salt marsh sediment in California, USA. Part 1: Occurrence and sources of organic contaminants. Chemosphere 2006;64(8):1383-1392. |
R828676 (Final) |
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| Journal Article | Tidal salt marsh sediment in California, USA. Part 2: occurrence and anthropogenic input of trace metals. | CHEMOSPHERE | Hwang H-M, Green PG, Higashi RM, Young TM | Hwang H-M, Green PG, Higashi RM, Young TM. Tidal salt marsh sediment in California, USA. Part 2:occurrence and anthropogenic input of trace metals. Chemosphere 2006;64(11):1899-1909. |
R828676 (Final) |
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| Journal Article | Historical trends of trace metals in a sediment core from a contaminated tidal salt marsh in San Francisco Bay. | None | Hwang H-M, Green PG, Young TM | Hwang H-M, Green PG, Young TM. Historical trends of trace metals in a sediment core from a contaminated tidal salt marsh in San Francisco Bay. Environmental Geochemistry and Health 2009;31(4):421-430. |
R828676 (Final) |
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| Journal Article | Tidal salt marsh sediment in California, USA: Part 3. Current and historic toxicity potential of contaminants and their bioaccumulation. | CHEMOSPHERE | Hwang H-M, Green PG, Young TM | Hwang H-M, Green PG, Young TM. Tidal salt marsh sediment in California, USA: Part 3. Current and historic toxicity potential of contaminants and their bioaccumulation. Chemosphere 2008;71(11):2139-2149. |
R828676 (Final) |
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| Journal Article | Sediment quality assessment in tidal salt marshes in northern California, USA: An evaluation of multiple lines of evidence approach | SCIENCE OF THE TOTAL ENVIRONMENT | Hwang H, Carr R, Cherr G, Green P, Grosholz E, Judah L, Morgan S, Ogle S, Rashbrook V, Rose W, Teh S, Bines C, Anderson S | Hwang H, Carr R, Cherr G, Green P, Grosholz E, Judah L, Morgan S, Ogle S, Rashbrook V, Rose W, Teh S, Bines C, Anderson S. Sediment quality assessment in tidal salt marshes in northern California, USA:An evaluation of multiple lines of evidence approach. SCIENCE OF THE TOTAL ENVIRONMENT 2013;454:189-198. |
R828676 (Final) |
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| Journal Article | Denitrification and the stoichiometry of nutrient regeneration in Waquoit Bay, Massachusetts. | ESTUARIES AND COASTS | LaMontagne MG, Astorga V, Giblin AE, Valiela I | LaMontagne MG, Astorga V, Giblin AE, Valiela I. Denitrification and the stoichiometry of nutrient regeneration in Waquoit Bay, Massachusetts. Estuaries and Coasts 2002;25(2):272-281. |
R828676 (Final) |
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| Journal Article | Comparison of free-living and particle-associated bacterial communities in a coastal lagoon. | MICROBIAL ECOLOGY | LaMontagne MG, Holden PA | LaMontagne MG, Holden PA. Comparison of free-living and particle-associated bacterial communities in a coastal lagoon. Microbial Ecology 2003;46(2):228-237. |
R828676 (Final) R828676C003 (2003) R828676C003 (Final) |
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| Journal Article | Bacterial diversity in marine hydrocarbon seep sediments. | ENVIRONMENTAL MICROBIOLOGY | LaMontagne MG, Leifer I, Bergmann S, Van De Werfhorst LC, Holden PA | LaMontagne MG, Leifer I, Bergmann S, Van De Werfhorst LC, Holden PA. Bacterial diversity in marine hydrocarbon seep sediments. Environmental Microbiology 2004;6(8):799-808. |
R828676 (Final) R828676C003 (2003) R828676C003 (Final) |
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| Journal Article | Application of multiple endmember spectral mixture analysis (MESMA) to AVIRIS imagery for coastal salt marsh mapping: a case study in China Camp, CA, USA. | INTERNATIONAL JOURNAL OF REMOTE SENSING | Li L, Ustin SL, Lay M | Li L, Ustin SL, Lay M. Application of multiple endmember spectral mixture analysis (MESMA) to AVIRIS imagery for coastal salt marsh mapping: a case study in China Camp, CA, USA. International Journal of Remote Sensing 2005;26(23):5193-5207. |
R828676 (Final) R828676C003 (Final) |
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| Journal Article | Dynamics of nitrous oxide reductase genes (nosZ) in intertidal rocky biofilms and sediments of the Douro River Estuary (Portugal), and their relation to N-biogeochemistry. | MICROBIAL ECOLOGY | Magalhaes C, Bano N, Wiebe WJ, Bordalo AA, Hollibaugh JT | Magalhaes C, Bano N, Wiebe WJ, Bordalo AA, Hollibaugh JT. Dynamics of nitrous oxide reductase genes (nosZ) in intertidal rocky biofilms and sediments of the Douro River Estuary (Portugal), and their relation to N-biogeochemistry. Microbial Ecology 2008;55(2):259-269. |
R828676 (Final) |
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| Journal Article | Likely population-level effects of contaminants on a resident estuarine fish species:comparing Gillichthys mirabilis population static measurements and vital rates in San Francisco and Tomales Bays. | None | McGourty CR, Hobbs JA, Bennett WA, Green PG, Hwang H-M, Ikemiyagi N, Lewis L, Cope JM | McGourty CR, Hobbs JA, Bennett WA, Green PG, Hwang H-M, Ikemiyagi N, Lewis L, Cope JM. Likely population-level effects of contaminants on a resident estuarine fish species: comparing Gillichthys mirabilis population static measurements and vital rates in San Francisco and Tomales Bays. Estuaries and Coasts 2009;32(6):1111-1120. |
R828676 (Final) |
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| Journal Article | Spatial and temporal movement of the lined shore crab Pachygrapsus crassipes in salt marshes and its utility as an indicator of habitat condition. | MARINE ECOLOGY PROGRESS SERIES | Morgan SG, Spilseth SA, Page HM, Brooks AJ, Grosholz ED | Morgan SG, Spilseth SA, Page HM, Brooks AJ, Grosholz ED. Spatial and temporal movement of the lined shore crab Pachygrapsus crassipes in salt marshes and its utility as an indicator of habitat condition. Marine Ecology Progress Series 2006;314:271-281. |
R828676 (Final) R828676C001 (Final) |
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| Journal Article | Formulating and testing a partially specified dynamic energy budget model. | ECOLOGY | Nisbet RM, McCauley E, Gurney WSC, Murdoch WW, Wood SN | Nisbet RM, McCauley E, Gurney WSC, Murdoch WW, Wood SN. Formulating and testing a partially specified dynamic energy budget model. Ecology 2004;85(11):3132-3139. |
R828676 (Final) |
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| Journal Article | Validation of otolith growth rate analysis using cadmium-exposed larval topsmelt (Atherinops affinis). | ENVIRONMENTAL TOXICOLOGY & CHEMISTRY | Rose WL, Hobbs JA, Nesbit RM, Green PG, Cherr GN, Anderson SL | Rose WL, Hobbs JA, Nisbet RM, Green PG, Cherr GN, Anderson SL. Validation of otolith growth rate analysis using cadmium-exposed larval topsmelt (Atherinops affinis). Environmental Toxicology & Chemistry 2005;24(10):2612-2620. |
R828676 (Final) R828676C002 (2004) |
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| Journal Article | Mapping marshland vegetation of San Francisco Bay, California, using hyperspectral data. | INTERNATIONAL JOURNAL OF REMOTE SENSING | Rosso PH, Ustin SL, Hastings A | Rosso PH, Ustin SL, Hastings A. Mapping marshland vegetation of San Francisco Bay, California, using hyperspectral data. International Journal of Remote Sensing 2005;26(23):5169-5191. |
R828676 (Final) R828676C003 (Final) |
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| Journal Article | Reflectance properties and physiological responses of Salicornia virginica to heavy metal and petroleum contamination. | ENVIRONMENTAL POLLUTION | Rosso PH, Pushnick JC, Lay M, Ustin SL | Rosso PH, Pushnick JC, Lay M, Ustin SL. Reflectance properties and physiological responses of Salicornia virginica to heavy metal and petroleum contamination. Environmental Pollution 2005;137(2):241-252. |
R828676 (Final) |
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| Journal Article | Use of lidar to study changes associated with Spartina invasion in San Francisco Bay marshes. | REMOTE SENSING OF ENVIRONMENT | Rosso PH, Ustin SL, Hastings A | Rosso PH, Ustin SL, Hastings A. Use of lidar to study changes associated with Spartina invasion in San Francisco Bay marshes. Remote Sensing of Environment 2006;100(3):295-306. |
R828676 (Final) R828676C003 (Final) |
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| Journal Article | Evaluation of internal elastomer tags for small, mature crabs. | CRUSTACEANA | Spilseth SA, Morgan SG | Spilseth SA, Morgan SG. Evaluation of internal elastomer tags for small, mature crabs. Crustaceana 2005;78(11):1383-1388. |
R825689C028 (Final) R828676 (Final) R828676C001 (2004) R828676C001 (Final) |
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| Journal Article | A mechanistic model of runoff-associated fecal coliform fate and transport through a coastal lagoon. | WATER RESEARCH | Steets BM, Holden PA | Steets BM, Holden PA. A mechanistic model of runoff-associated fecal coliform fate and transport through a coastal lagoon. Water Research 2003;37(3):589-608. |
R828676 (Final) R828676C003 (2002) R828676C003 (Final) |
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| Presentation | Complementing the eco-risk paradigm: indicators of exposure and effect in saltmarsh species. | None | Anderson SL, Brooks AJ, Cherr GN, Higashi RM, et al | Anderson SL, Brooks AJ, Cherr GN, Higashi RM, et al. Complementing the eco-risk paradigm: indicators of exposure and effect in saltmarsh species. Presented at the Society of Environmental Toxicology and Chemistry Meeting, Portland, OR, November 14-19, 2004. |
R828676 (2004) |
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| Presentation | Integrating indicators of exposure and effect in saltmarsh species. | None | Anderson SL, Brooks AJ, Cherr GN, Higashi RM, et al | Anderson SL, Brooks AJ, Cherr GN, Higashi RM, et al. Integrating indicators of exposure and effect in saltmarsh species. Presented at the California Bay Delta Authority Semi-Annual Science Conference, Sacramento, CA, September 2004. |
R828676 (2004) |
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| Presentation | How PEEIR data inform restoration of Carpinteria saltmarsh. | None | Anderson SL | Anderson SL. How PEEIR data inform restoration of Carpinteria saltmarsh. Technical briefing presented to Chevron consultants, 2004. |
R828676 (2004) |
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| Presentation | PEEIR data and implications for site restoration. | None | Anderson SL | Anderson SL. PEEIR data and implications for site restoration. Briefing presented to landowners at Stege Marsh, Zeneca Agrochemical, 2004. |
R828676 (2004) |
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| Presentation | PEEIR data and implications for site restoration. | None | Anderson SL | Anderson SL. PEEIR data and implications for site restoration. Briefing presented to landowners at Stege Marsh, at University of California-Berkeley, Berkeley, CA, 2004. |
R828676 (2004) |
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| Presentation | Contaminant effects in Stege Marsh and implications for long-term management. | None | Anderson SL | Anderson SL. Contaminant effects in Stege Marsh and implications for long-term management. Presented to the San Francisco Bay Regional Water Quality Control Board Staff, 2005. |
R828676 (2004) |
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| Presentation | A Western center for estuarine ecosystem research. | None | Anderson S | Anderson S. A Western center for estuarine ecosystem research. Presented at the EMAP Partnerships in Coastal Monitoring Meeting, Pensacola, FL, April 2001. |
R828676 (2001) |
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| Presentation | PEEIR Program at Southern California Wetland Recovery Project (SCWRP). | None | Anderson S | Anderson S. PEEIR Program at Southern California Wetland Recovery Project (SCWRP). Presented at the USEPA Meeting in Corvallis, OR, October 2001. |
R828676 (2001) |
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| Presentation | PEEIR Program objectives. | None | Anderson S | Anderson S. PEEIR Program objectives. Presented to the Gulf of the Farallones National Marine Sanctuary, Sea Grant Tomales Bay Watershed Coordinator, Point Reyes National Seashore, and San Francisco Bay Wetland Research and Monitoring Program, 2001/2002. |
R828676 (2001) |
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| Presentation | PEEIR Program. | None | Anderson S, Higashi R | Anderson S, Higashi R. PEEIR Program. Presented at the EPA Region IX Meeting, November 2001. |
R828676 (2001) |
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| Presentation | Value of PEEIR approach for various Bay-Delta restoration efforts. | None | Cherr G, Higashi R | Cherr G, Higashi R. Value of PEEIR approach for various Bay-Delta restoration efforts. Briefing presented to the California Coastal Commission authorities, 2004. |
R828676 (2004) |
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| Presentation | Briefing on the Pacific Estuarine Ecosystem Indicator Research (PEEIR) Consortium. | None | Fujiwara M, Kendall B, Nisbet R | Fujiwara M, Kendall B, Nisbet R. Briefing on the Pacific Estuarine Ecosystem Indicator Research (PEEIR) Consortium. Presented to the California Environmental Protection Agency Secretary Hickox and colleagues, Bodega Bay, CA, July 7, 2003. |
R828676 (2003) |
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| Presentation | Briefing on Pacific Estuarine Ecosystem Indicator Research (PEEIR) Consortium. | None | Fujiwara M, Kendall B, Nisbet R | Fujiwara M, Kendall B, Nisbet R. Briefing on Pacific Estuarine Ecosystem Indicator Research (PEEIR) Consortium. Presented to the Environmental Protection Agency Region IX, San Francisco, CA, March 27, 2003. |
R828676 (2003) |
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| Presentation | A bioindicator approach to evaluating reproductive health of estuarine organisms. | None | Fujiwara M, Kendall B, Nisbet R | Fujiwara M, Kendall B, Nisbet R. A bioindicator approach to evaluating reproductive health of estuarine organisms. Presented at the Society of Environmental Toxicology & Chemistry Annual Meeting Program and Abstracts, Austin, TX, November 9-13, 2003. |
R828676 (2003) |
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| Presentation | Pacific Estuarine Ecosystem Indicator Research (PEEIR) Consortium. | None | Fujiwara M, Kendall B, Nisbet R | Fujiwara M, Kendall B, Nisbet R. Pacific Estuarine Ecosystem Indicator Research (PEEIR) Consortium. Presented at the State of the Estuary Conference in Oakland, CA, October 21, 2003. |
R828676 (2003) |
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| Presentation | Briefing on Pacific Estuarine Ecosystem Indicator Research (PEEIR) Consortium. | None | Fujiwara M, Kendall B, Nisbet R | Fujiwara M, Kendall B, Nisbet R. Briefing on Pacific Estuarine Ecosystem Indicator Research (PEEIR) Consortium. Presented to the U.S. Environmental Protection Agency Region IX, San Francisco, CA, October 9, 2003. |
R828676 (2003) |
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| Presentation | Briefing on Pacific Estuarine Ecosystem Indicator Research (PEEIR) Consortium. | None | Fujiwara M, Kendall B, Nisbet R | Fujiwara M, Kendall B, Nisbet R. Briefing on Pacific Estuarine Ecosystem Indicator Research (PEEIR) Consortium. Presented to the U.S. Environmental Protection Agency Region X, Portland, OR, September 13, 2003. |
R828676 (2003) |
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| Presentation | A bioindicator approach to assessing the effects of contaminants on estuarine species. | None | Fujiwara M, Kendall B, Nisbet R | Fujiwara M, Kendall B, Nisbet R. A bioindicator approach to assessing the effects of contaminants on estuarine species. Presented at the Estuarine Research Federation Program and Abstracts, Seattle, WA, September 14-18, 2003. |
R828676 (2003) |
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| Presentation | Models relating physiological indicators to population dynamics at multiple spatial scales. | None | Fujiwara M, Kendall BE, Nisbet RM, Bennett WA, et al | Fujiwara M, Kendall BE, Nisbet RM, Bennett WA, et al. Models relating physiological indicators to population dynamics at multiple spatial scales. Presented to the Ecological Society of America, 2005 (abstract). |
R828676 (2004) |
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| Presentation | Use of dynamic energy budget models to relate sublethal responses to population responses. | None | Nisbet RM | Nisbet RM. Use of dynamic energy budget models to relate sublethal responses to population responses. Presented at the Society of Environmental Toxicology and Chemistry Meeting, Portland, OR, November 14-19, 2004. |
R828676 (2004) |
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| Presentation | Ecological indicators. | None | Nisbet RM | Nisbet RM. Ecological indicators. Presented at the Pacific Institute for Mathematical Sciences Distinguished Visitor Meeting, University of Alberta, October 2004. |
R828676 (2004) |
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| Presentation | Remote sensing of wetland conditions in West Coast salt marshes. | None | Ustin SL, Lay M, Li Lin | Ustin SL, Lay M, Li Lin. Remote sensing of wetland conditions in West Coast salt marshes. Presented at the International Symposium on Optical Science and Technology, SPIE 49 th Annual Meeting, August 2-6, 2004. |
R828676 (2004) |
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The perspectives, information and conclusions conveyed in research project abstracts, progress reports, final reports, journal abstracts and journal publications convey the viewpoints of the principal investigator and may not represent the views and policies of ORD and EPA. Conclusions drawn by the principal investigators have not been reviewed by the Agency.