Publications for Center:

HSRC (2001) - Western Region Hazardous Substance Research Center for Developing In-Situ Processes for VOC Remediation in Groundwater and Soils

Grant Number R828772

Abstract (2)
Article/Press Release (1)
Book Chapter (3)
Computer program (2)
Dissertation/Thesis (26)
Journal Article (60)
Patent/Patent Application (1)
Presentation (58)
Proceedings (5)
Reference Type Citation Progress Report Year Document Sources
Abstract Martinez Prado A, Skinner K, Ciuffetti LM, Williamson KJ. MTBE kinetics by n-alkane-grown mycobacterium vaccae and Graphium sp. In: Third International Conference on Remediation of Chlorinated and Recalcitrant Compounds, Session E9: MTBE Characterization and Treatment. Batelle, Monterey, CA, pp. 20-23, 2002. R828772 (Final)
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Abstract Osathaphan K, Azizian MF, Nelson PO. Chromated copper arsenate, or CCA adsorption on an iron-oxide adsorbent. American Chemical Society 2001;41(1):436-440. R828772 (2002)
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Article/Press Release Koch C, Ingle J, Remcho V. Bonding Upchurch NanoPorts to PDMS. Lab on a Chip: Chips & Tips February 12, 2008. R828772 (Final)
Book Chapter Martinez-Prado A, Skinner K, Ciuffetti LM, Williamson KJ. MTBE kinetics by n-alkane-grown Mycobacterium vaccae and Graphium sp. In: Gavaskar AR, Chen ASC, eds. Remediation of Chlorinated and Recalcitrant Compounds, 2002: Proceedings of the Third International Conference on Remediation of Chlorinated and Recalcitrant Compounds, May 20-23, 2002, Monterey, CA. Columbus, OH: Battelle Press, 2002, pp. 20-23. R828772 (2002)
R828772 (Final)
R828772C003 (2002)
Book Chapter McCarty PL, Ellis DE. Natural attenuation. In: Reible D, Demnerova K, eds. Innovative Approaches to the On-Site Assessment and Remediation of Contaminated Sites. Dordrecht, The Netherlands: Kluwer Academic Publishers, 2002, pp. 141-181. R828772 (2002)
R828772 (Final)
Book Chapter Munakata N, Reinhard M. Palladium catalysis for the treatment of contaminated waters: a review. In: Smith JA, Burns SE, eds. Physicochemical Groundwater Remediation. Dordrecht, The Netherlands: Kluwer Academic/Plenum Publishers, 2001, pp. 45-71. R825689C093 (Final)
R828772 (2002)
R828772 (Final)
Computer program Fienen MN, Luo J, Kitanidis PK. ComCZAR: complex capture zone analysis routine. 2005, available at: http://www.talulat.com/mike/software/ exit EPA. R828772 (Final)
Computer program Fienen M, Luo J, Kitanidis P. A Bayesian geostatistical transfer function approach to tracer test analysis-implementation and examples. 2006, available at:http://www.talulat.com/mike/software/lstran.html exit EPA. R828772 (Final)
Dissertation/Thesis Benekos ID. On the determination of transverse dispersivity:experiments and simulations in a helix and a cochlea. Ph.D. Dissertation. Stanford University, Palo Alto, CA, August 2005. R828772 (Final)
R828772C013 (2005)
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Dissertation/Thesis Blatchford C. Aerobic degradation of chlorinated ethenes by mycobacterium strain JS60 in the presence of organic acids. Masters Thesis. Oregon State University, Corvallis, OR, 2005. R828772 (Final)
R828772C010 (2005)
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Dissertation/Thesis Cantrell K. The development and characterization of miniature spectrometers for measuring the redox status of environmental samples. Ph.D. Dissertation. Oregon State University, Corvallis, OR, 2002. R828772 (2003)
R828772 (Final)
R828772C011 (2005)
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Dissertation/Thesis Cheng H. Sorption and hydrolysis of chlorinated aliphatic hydrocarbons in hydrophobic micropores. Ph.D. Dissertation. Stanford University, Palo Alto, CA, 2006. R828772 (Final)
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Dissertation/Thesis Chu MY. Factors controlling the efficiency of bio-enhanced PCE NAPL dissolution. Ph.D. Dissertation. Stanford University, Stanford, CA, 2004. R828772 (2004)
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Dissertation/Thesis Cupples AM. Dechlorination of trichloroethene to ethene by Dehalococcoides-like microorganisms: kinetics, growth characteristics, and substrate limitations. Ph.D. Dissertation. Department of Civil and Environmental Engineering, Stanford University, Stanford, CA, 2003. R828772 (2004)
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Dissertation/Thesis Doughty DM. Metabolism of dichloroethenes by the butane-oxidizing bacterium, Pseudomonas butanovora. M.S. Thesis. Department of Microbiology, Oregon State University, Corvallis, OR, 2004. R828772 (2004)
R828772 (Final)
R828772C010 (2005)
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Dissertation/Thesis Doughty DM. Control of alkane monooxygenase activity and expression in Pseudomonas butanavora. Ph.D. Dissertation. Oregon State University, Corvallis, OR, 2008. R828772 (Final)
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Dissertation/Thesis Fienen MN. Inverse methods for near-field hydrogeologic characterization. Ph.D. Dissertation. Stanford University, Palo Alto, CA, 2006. R828772 (Final)
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Dissertation/Thesis Halsey KH. Investigating the basis of substrate specificity in butane monooxygenase and chlorinated ethene toxicity in Pseudomonas butanovora. Ph.D. Dissertation. Oregon State University, Corvallis, OR, 2007. R828772 (Final)
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Dissertation/Thesis Lee J-H. Anaerobic reductive dechlorination of TCE and TCFE in TCE contaminated sediments:enhanced bioremediation and bioaugmentation. Ph.D. Dissertation. Oregon State University, Corvallis, OR, 2006. R828772 (Final)
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Dissertation/Thesis Li J. Molecular analysis of bacterial community dynamics during bioaugmentation studies in a soil column and at a field test site. M.S. Thesis. Department of Civil Construction and Environmental Engineering, Oregon State University, Corvallis, OR, 2004. R828772 (2004)
R828772 (Final)
R828772C010 (2005)
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Dissertation/Thesis Luo J. Hydraulic control and reactive transport modeling for in-situ bioremediation of uranium contaminated groundwater. Ph.D. Dissertation. Stanford University, Palo Alto, CA, 2005. R828772 (Final)
R828772C013 (2005)
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Dissertation/Thesis Maremunda B. Aerobic cometabolism of 1, 1, 1-trichloroethane and 1, 1-dichloroethene by a bioaugmented butane-utilizing culture in a continuous flow column. Masters Thesis. Oregon State University, Corvallis, OR, 2004. R828772 (2004)
R828772 (Final)
R828772C010 (2005)
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Dissertation/Thesis Munakata N. Palladium-catalyzed hydrodehalogenation for groundwater remediation:sulfide deactivation model, regenerant comparison, and chemical surface changes. Ph.D. Dissertation. Stanford University, Palo Alto, CA, 2005. R828772 (Final)
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Dissertation/Thesis Osathaphan K. Multi-metal equilibrium sorption and transport modeling for copper, chromium, and arsenic in an iron oxide-coated sand, synthetic groundwater system. Ph.D. Dissertation. Civil, Construction, and Environmental Engineering, Oregon State University, Corvallis, OR, 2001. R828772 (2002)
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Dissertation/Thesis Pon G. Inhibition, kinetic and modeling studies of acetylene and 1-chloro-1-fluoroethene on reductive dechlorination of TCE and vinyl chloride. Ph.D. Dissertation. Oregon State University, Corvallis, OR, 2003. R828772 (2004)
R828772 (Final)
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Dissertation/Thesis Prayoonpokarach S. Development and evaluation of sampling techniques, instrumentation, and pyridine derivative reagents for fluorometric determination of chloroform and TCE in water with a portable fluorometer. Ph.D. Dissertation. Oregon State University, Corvallis, OR, 2002. R827920 (Final)
R828772 (2003)
R828772C011 (2005)
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Dissertation/Thesis Prayoonpokarach S. Development and evaluation of sampling techniques, instrumentation, and pyridine derivative reagents for fluorometric determination of chloroform and TCE in water with a portable fluorometer. Ph.D. Dissertation. Oregon State University, Corvallis, OR, 2003. R828772 (Final)
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Dissertation/Thesis Razzetti C. Cometabolic degradation of 1,1,1-trichloroethane and 1,1-dichloroethane by a butane grown rhodococcus species:kinetic studies, reactor operation and modeling. Ph.D. Dissertation. University of Bologna, Bologna, Italy, 2005. R828772 (Final)
R828772C010 (2005)
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Dissertation/Thesis Ruiz-Haas P. Monitoring redox conditions with redox indicators during microbial reductive dechlorination in microcosms and bioaugmented columns. Ph.D. Dissertation. Oregon State University, Corvallis, OR, 2006. R828772 (Final)
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Dissertation/Thesis Sattayatewa C. Growth characteristics and chlorinated hydrocarbon transformation ability of a Rhodococcus sp. isolate. Masters Thesis. Oregon State University, Corvallis, OR, 2004. R828772 (2004)
R828772 (Final)
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Dissertation/Thesis Sattayatewa C. Growth characteristics and chlorinated hydrocarbon transformation ability of a rhodococcus sp. isolate. M.S. Project. Department of Civil Construction and Environmental Engineering, 2004. R828772C010 (2005)
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Dissertation/Thesis Skinner KM. Characterization of the molecular foundations and biochemistry of alkane and ether oxidation in a filamentous fungus, a Graphium species. Ph.D. Dissertation. Oregon State University, Corvallis, OR, 2007. R828772 (Final)
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Dissertation/Thesis Sriwatanapongse W. Reductive dechlorination of trichloroethylene by palladium on alumina catalyst:a solid state NMR study of the surface reaction mechanism. Ph.D. Dissertation. Stanford University, Palo Alto, CA, 2005. R828772 (Final)
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Dissertation/Thesis Yu S. Kinetic and modeling investigations of the anaerobic reductive dechlorination of chlorinated ethylenes using single and binary mixed cultures and silicon-based organic compounds as slow-release substrates. Ph.D. Dissertation. Department of Civil, Construction and Environmental Engineering, Oregon State University, Corvallis, OR, 2003. R828772 (2004)
R828772 (Final)
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Journal Article Achong GR, Rodriguez AM, Spormann AM. Benzylsuccinate synthase of Azoarcus sp. strain T: cloning, sequencing, transcriptional organization, and its role in anaerobic toluene and m-xylene mineralization. Journal of Bacteriology 2001;183(23):6763-6770. R828772 (Final)
Journal Article Arp DJ, Yeager CM, Hyman MR. Molecular and cellular fundamentals of aerobic cometabolism of trichloroethylene. Biodegradation 2001;12(2):81-103. R825689C027 (Final)
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R828772 (Final)
Journal Article Benekos ID, Cirpka OA, Kitanidis PK. Experimental determination of transverse dispersivity in a helix and a cochlea. Water Resources Research 2006;42:W07406, doi:10.1029/2005WR004712. R828772 (Final)
Journal Article Cantrell KM, Ingle Jr JD. The SLIM spectrometer. Analytical Chemistry 2003;75(1):27-35. R828772 (2002)
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R828772 (Final)
R828772C007 (2001)
Journal Article Cantrell K, Ingle Jr. JD. Design and evaluation of a membrane sampling spectrometer array for real-time, in-situ depth profiling of sub-surface waters. Aquatic Sciences-Research Across Boundaries. R828772 (2003)
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Journal Article Cheng H, Reinhard M. Sorption of trichloroethylene in hydrophobic micropores of dealuminated Y zeolites and natural minerals. Environmental Science & Technology 2006;40(24):7694-7701. R828772 (Final)
R828772C014 (2005)
Journal Article Cheng H, Reinhard M. Measuring hydrophobic micropore volumes in geosorbents from trichloroethylene desorption data. Environmental Science & Technology 2006;40(11):3595-3602. R828772 (Final)
R828772C014 (2005)
Journal Article Cheng H, Reinhard M. Sorption and inhibited dehydrohalogenation of 2,2-dichloropropane in micropores of dealuminated Y zeolites. Environmental Science & Technology 2007;41(6):1934-1941. R828772 (Final)
Journal Article Chu M, Kitanidis PK, McCarty PL. Effects of biomass accumulation on microbially enhanced dissolution of a PCE pool: a numerical simulation. Journal of Contaminant Hydrology 2003;65(1-2):79-100. R828772 (2002)
R828772 (Final)
Journal Article Cunningham JA, Deitsch JJ, Smith JA, Reinhard M. Quantification of contaminant sorption-desorption time-scales from batch experiments. Environmental Toxicology and Chemistry 2005;24(9):2160-2166. R828772 (Final)
R828772C014 (2005)
Journal Article Cupples AM, Spormann AM, McCarty PL. Growth of a Dehalococcoides-like microorganism on vinyl chloride and cis-dichloroethene as electron acceptors as determined by competitive PCR. Applied and Environmental Microbiology 2003;69(2):953-959. R828772 (2002)
R828772 (Final)
Journal Article Cupples AM, Spormann AM, McCarty PL. Comparative evaluation of chloroethene dechlorination to ethene by Dehalococcoides-like microorganisms. Environmental Science & Technology 2004;38(18):4768-4774. R828772 (2004)
R828772 (Final)
Journal Article Doughty DM, Sayavedra-Soto LA, Arp DJ, Bottomley PJ. Effects of dichloroethene isomers on the induction and activity of butane monooxygenase in the alkane-oxidizing bacterium “Pseudomonas butanovora.” Applied and Environmental Microbiology 2005;71(10):6054-6059. R828772 (2003)
R828772 (Final)
R828772C010 (2005)
Journal Article Doughty DM, Sayavedra-Soto LA, Arp DJ, Bottomley PJ. Product repression of alkane monooxygenase expression in Pseudomonas butanovora. Journal of Bacteriology 2006;188(7):2586-2592. R828772 (Final)
R828772C010 (2005)
Journal Article Doughty DM, Halsey KH, Vieville CJ, Sayavedra-Soto LA, Arp DJ, Bottomley PJ. Propionate inactivation of butane monooxygenase activity in ‘Pseudomonas butanovora’: biochemical and physiological implications. Microbiology 2007;153(Pt 11):3722-3729. R828772 (Final)
Journal Article Doughty DM, Kurth EG, Sayavedra-Soto LA, Arp DJ, Bottomley PJ. Evidence for involvement of copper ions and redox state in regulation of butane monooxygenase in Pseudomonas butanovora. Journal of Bacteriology 2008;190(8):2933-2938. R828772 (Final)
Journal Article Doughty DM, Arp DJ, Bottomley PJ. Dichloroethylenes as substrates and inducers of butane monooxygenase in Pseudomonas butanovora. Microbiology. R828772 (2003)
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Journal Article Dupin HJ, Kitanidis PK, McCarty PL. Pore-scale modeling of biological clogging due to aggregate expansion: a material mechanics approach. Water Resources Research 2001;37(12):2965-2979. R828772 (2002)
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Journal Article Dupin HJ, Kitanidis PK, McCarty PL. Simulations of two-dimensional modeling of biomass aggregate growth in network models. Water Resources Research 2001;37(12):2981-2994. R828772 (2002)
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Journal Article Field JA, Reed RL, Istok JD, Semprini L, Bennett P, Buscheck TE. Trichlorofluoroethene: a reactive tracer for evaluating reductive dechlorination in large-diameter permeable columns. Ground Water Monitoring & Remediation 2005;25(2):68-77. R828772 (2005)
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Journal Article Fienen MN, Luo J, Kitanidis PK. Semi-analytical homogeneous anisotropic capture zone delineation. Journal of Hydrology 2005;312(1-4):39-50. R828772 (2003)
R828772 (Final)
Journal Article Fienen MN, Luo J, Kitanidis PK. A Bayesian geostatistical transfer function approach to tracer test analysis. Water Resources Research 2006;42:W07426, doi:10.1029/2005WR004576. R828772 (Final)
Journal Article Frascari D, Kim Y, Dolan ME, Semprini L. A kinetic study of aerobic propane uptake and cometabolic degradation of chloroform, cis-dichloroethylene and trichloroethylene in microcosms with groundwater/aquifer solids. Water, Air, & Soil Pollution: Focus 2003;3(3):285-298. R828772 (2002)
R828772 (Final)
Journal Article Gandhi RK, Hopkins GD, Goltz MN, Gorelick SM, McCarty PL. Full-scale demonstration of in situ cometabolic biodegradation of trichloroethylene in groundwater. 1. Dynamics of a recirculating well system. Water Resources Research 2002;38(4):1039, doi:10.1029/2001WR000379. R828772 (2002)
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Journal Article Gandhi RK, Hopkins GD, Goltz MN, Gorelick SM, McCarty PL. Full-scale demonstration of in situ cometabolic biodegradation of trichloroethylene in groundwater. 2. Comprehensive analysis of field data using reactive transport modeling. Water Resources Research 2002;38(4):1040, doi:10.1029/2001WR000380. R828772 (2002)
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Journal Article Goltz MN, Williamson KJ. Transfer and commercialisation of contaminated groundwater remediation technologies. International Journal of Technology Transfer and Commercialisation 2002;1(4):329-346. R828772 (2002)
R828772 (Final)
Journal Article Halsey KH, Sayavedra-Soto LA, Bottomley PJ, Arp DJ. Trichloroethylene degradation by butane-oxidizing bacteria causes a spectrum of toxic effects. Applied Microbiology and Biotechnology 2005;68(6):794-801. R828772 (2003)
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R828772C010 (2005)
Journal Article Halsey KH, Sayavedra-Soto LA, Bottomley PJ, Arp DJ. Site-directed amino acid substitutions in the hydroxylase α subunit of butane monooxygenase from Pseudomonas butanovora: implications for substrates knocking at the gate. Journal of Bacteriology 2006;188(13):4962-4969. R828772 (Final)
Journal Article Halsey KH, Doughty DM, Sayavedra-Soto LA, Bottomley PJ, Arp DJ. Evidence for modified mechanisms of chloroethene oxidation in Pseudomonas butanovora mutants containing single amino acid substitutions in the hydroxylase α-subunit of butane monooxygenase. Journal of Bacteriology 2007;189(14):5068-5074. R828772 (Final)
Journal Article Johnson HA, Pelletier DA, Spormann AM. Isolation and characterization of anaerobic ethylbenzene dehydrogenase, a novel Mo-Fe-S enzyme. Journal of Bacteriology 2001;183(15):4536-4542. R825689C092 (Final)
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R828772 (Final)
Journal Article Jones BD, Ingle Jr JD. Evaluation of immobilized redox indicators as reversible, in situ redox sensors for determining Fe(III)-reducing conditions in environmental samples. Talanta 2001;55(4):699-714. R828772 (2002)
R828772 (Final)
Journal Article Jones BD, Ingle Jr JD. Evaluation of redox indicators for determining sulfate-reducing and dechlorinating conditions. Water Research 2005;39(18):4343-4354. R828772 (Final)
R828772C011 (2005)
Journal Article Kim Y, Arp DJ, Semprini L. Kinetic and inhibition studies for the aerobic cometabolism of 1,1,1-trichloroethane, 1,1-dichloroethylene, and 1,1-dichloroethane by a butane-grown mixed culture. Biotechnology and Bioengineering 2002;80(5):498-508. R828772 (2002)
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R828772C003 (2002)
Journal Article Kim Y, Arp DJ, Semprini L. A combined method for determining inhibition type, kinetic parameters, and inhibition coefficients for aerobic cometabolism of 1,1,1-trichloroethane by a butane-grown mixed culture. Biotechnology and Bioengineering 2002;77(5):564-576. R828772 (2002)
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R828772C003 (2002)
Journal Article Kim Y, Semprini L. Cometabolic transformation of cis-1,2-dichloroethylene and cis-1,2-dichloroethylene epoxide by a butane-grown mixed culture. Water Science & Technology 2005;52(8):125-131. R828772 (Final)
R828772C010 (2005)
Journal Article Lee IS, Bae JH, Yang Y, McCarty PL. Simulated and experimental evaluation of factors affecting the rate and extent of reductive dehalogenation of chloroethenes with glucose. Journal of Contaminant Hydrology 2004;74(1-4):313-331. R828772 (2004)
R828772 (Final)
Journal Article Luo J, Kitanidis PK. Fluid residence times within a recirculation zone created by an extraction-injection well pair. Journal of Hydrology 2004;295(1-4):149-162. R828772 (2003)
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R828772C013 (2005)
Journal Article Luo J, Wu W, Fienen MN, Jardine PM, Mehlhorn TL, Watson DB, Cirpka OA, Criddle CS, Kitanidis PK. A nested-cell approach for in situ remediation. Ground Water 2006;44(2):266-274. R828772 (Final)
Journal Article Luo J, Cirpka OA, Kitanidis PK. Temporal-moment matching for truncated breakthrough curves for step or step-pulse injection. Advances in Water Resources 2006;29(9):1306-1313. R828772 (Final)
R828772C013 (2005)
Journal Article McMurdie PJ, Behrens SF, Holmes S, Spormann AM. Unusual codon bias in vinyl chloride reductase genes of Dehalococcoides species. Applied and Environmental Microbiology 2007;73(8):2744-2747. R828772 (Final)
Journal Article Muller JA, Rosner BM, von Abendroth G, Meshulam-Simon G, McCarty PL, Spormann AM. Molecular identification of the catabolic vinyl chloride reductase from Dehalococcoides sp. strain VS and its environmental distribution. Applied and Environmental Microbiology 2004;70(8):4880-4888. R828772 (2004)
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Journal Article Munakata N, Reinhard M. Palladium-catalyzed aqueous hydrodehalogenation in column reactors:modeling of deactivation kinetics with sulfide and comparison of regenerants. Applied Catalysis B:Environmental 2007;75(1-2):1-10. R828772 (Final)
Journal Article Niemet MR, Semprini L. Column studies of anaerobic carbon tetrachloride biotransformation with Hanford aquifer material. Ground Water Monitoring & Remediation 2005;25(3):82-92. R828772 (2005)
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Journal Article Pon G, Hyman MR, Semprini L. Acetylene inhibition of trichloroethene and vinyl chloride reductive dechlorination. Environmental Science & Technology 2003;37(14):3181-3188. R828772 (2003)
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Journal Article Pon G, Semprini L. Anaerobic reductive dechlorination of 1-chloro-1-fluoroethene to track the transformation of vinyl chloride. Environmental Science & Technology 2004;38(24):6803-6808. R828772 (2003)
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R828772C012 (2005)
Journal Article Ruiz-Haas P, Ingle Jr JD. Monitoring redox conditions with flow-based and fiber optic sensors based on redox indicators: application to reductive dehalogenation in a bioaugmented soil column. Geomicrobiology Journal 2007;24(3-4):365-378. R828772 (Final)
Journal Article Sayavedra-Soto LA, Doughty DM, Kurth EG, Bottomley PJ, Arp DJ. Product and product-independent induction of butane oxidation in Pseudomonas butanovora. FEMS Microbiology Letters 2005;250(1):111-116. R828772 (Final)
Journal Article Schroth MH, Istok JD. Approximate solution for solute transport during spherical-flow push-pull tests. Ground Water 2005;43(2):280-284. R828772 (2005)
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Journal Article Semprini L, Dolan ME, Mathias MA, Hopkins GD, McCarty PL. Laboratory, field, and modeling studies of bioaugmentation of butane-utilizing microorganisms for the in situ cometabolic treatment of 1,1-dichloroethene, 1,1-dichloroethane, and 1,1,1-trichloroethane. Advances in Water Resources 2007;30(6-7):1528-1546. R828772 (Final)
Journal Article Semprini L, Dolan ME, Mathias MA, Hopkins GD, McCarty PL. Bioaugmentation of butane-utilizing microorganisms for the in situ cometabolic treatment of 1,1-dichloroethene, 1,1-dichloroethane, and 1,1,1-trichloroethane. European Journal of Soil Biology 2007;43(5-6):322-327. R828772 (Final)
Journal Article Skinner KM, Martinez-Prado A, Hyman MR, Williamson KJ, Ciuffetti LM. Pathway, inhibition and regulation of methyl tertiary butyl ether oxidation in a filamentous fungus, Graphium sp. Applied Microbiology and Biotechnology 2008;77(6):1359-1365. R828772 (Final)
Journal Article Sriwatanapongse W, Reinhard M, Klug CA. Reductive hydrodechlorination of trichloroethylene by palladium-on-alumina catalyst:13C solid-state NMR study of surface reaction precursors. Langmuir 2006;22(9):4158-4164. R828772 (Final)
Journal Article Taylor AE, Dolan ME, Bottomley PJ, Semprini L. Utilization of fluoroethene as a surrogate for aerobic vinyl chloride transformation. Environmental Science & Technology 2007;41(18):6378-6383. R828772 (Final)
Journal Article Yang Y, McCarty PL. Comparison between donor substrates for biologically enhanced tetrachloroethene DNAPL dissolution. Environmental Science & Technology 2002;36(15):3400-3404. R828772 (2002)
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Journal Article Yeager CM, Bottomley PJ, Arp DJ. Requirement of DNA repair mechanisms for survival of Burkholderia cepacia G4 upon degradation of trichloroethylene. Applied and Environmental Microbiology 2001;67(12):5384-5391. R828772 (2002)
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Journal Article Yeager CM, Bottomley PJ, Arp DJ. Cytotoxicity associated with trichloroethylene oxidation in Burkholderia cepacia G4. Applied and Environmental Microbiology 2001;67(5):2107-2115. R825689C027 (Final)
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Journal Article Yeager CM, Arthur KM, Bottomley PJ, Arp DJ. Trichloroethylene degradation by toluene-oxidizing bacteria grown on non-aromatic substrates. Biodegradation 2004;15(1):19-28. R828772 (2003)
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R828772C010 (2005)
Journal Article Yu S, Semprini L. Comparison of trichloroethylene reductive dehalogenation by microbial communities stimulated on silicon-based organic compounds as slow-release anaerobic substrates. Water Research 2002;36(20):4985-4996. R828772 (2002)
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R828772C001 (2001)
Journal Article Yu S, Semprini L. Kinetics and modeling of reductive dechlorination at high PCE and TCE concentrations. Biotechnology and Bioengineering 2004;88(4):451-464. R828772 (2004)
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Journal Article Yu S, Dolan ME, Semprini L. Kinetics and inhibition of reductive dechlorination of chlorinated ethylenes by two different mixed cultures. Environmental Science & Technology 2005;39(1):195-205. R828772 (2003)
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R828772C012 (2005)
Patent/Patent Application Semprini L, Vancheeswaran S. Slow release substrates for driving microbial transformations of environmental contaminants. U.S. Patent No. 6,472,198, October 29, 2002. R828772 (2002)
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Presentation Azizian MF, Istok J, Semprini L. Evaluation of in situ aerobic cometabolism of chlorinated ethenes by toluene-utilizing microorganisms using push-pull tests. Presented at the Joint International Symposia for Subsurface Microbiology (ISSM 2005) and Environmental Biogeochemistry (ISEB XVII), Jackson Hole, WY, August 14-19, 2005. R828772C008 (2005)
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Presentation Azizian M, Behrens S, Sabalowsky A, Dolan M, Spormann A, Semprini L. Continuous-flow column studies of reductive dehalogenation of CAHs with evanite enriched culture:kinetics, inhibition, and monitoring of microbial activity. Poster presented at the Subsurface Biosphere Initiative (SBI) Workshop/IGERT Retreat, Newport, OR, June 18-21, 2006 (abstract and poster). R828772 (Final)
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Presentation Behrens S, McMurdie J, Meshulam G, Spormann A. Evaluation of a CARD-FISH protocol for the quantification of dehalococcoides sp. in soil. Presented at the 2005 American Society for Microbiology (ASM) General Meeting, Atlanta, GA, June 5-9, 2005. R828772 (Final)
R828772C012 (2005)
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Presentation Behrens S, Azizian M, McMurdie J, Sabalowsky A, Dolan M, Semprini L, Spormann AM. Monitoring gene abundance and expression of reductive dehalogenases involved in complete dechlorination of PCE under continuous flow conditions. Poster presented at the 11th International Symposium on Microbial Ecology, Vienna, Austria, August 2006. R828772 (Final)
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Presentation Benekos I, Kitanidis PK, Rahman MA, Cirpka OA. Experimental and mathematical studies of pore-scale transverse dispersion in a helical soil column. Presented at the American Geophysical Union (AGU) Fall Meeting, San Francisco, CA, December 10-14, 2001. R828772 (Final)
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Presentation Benekos I, Kitanidis PK. Experimental determination of transverse dispersivity in a cochlear device. Presented at the Western Pacific Geophysics Meeting, Honolulu, HI, August 15-21, 2004. R828772 (Final)
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Presentation Benekos I, Kitanidis PK. An optimization approach using tracer concentration breakthrough curves for determining the transverse dispersivity in a cochlear device. Presented at the EPA-HSRC Workshop on Risk Assessment and Monitoring Research, Las Vegas, NV, November 4-5, 2005. R828772 (Final)
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Presentation Benekos I, Kitanidis P. On the determination of transverse dispersivity:experiments and simulations in a helix and a cochlea. Presented at the American Geophysical Union (AGU) Fall Annual Meeting, San Francisco, CA, December 5-9, 2005. R828772 (Final)
R828772C013 (2005)
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Presentation Cakin D, Ingle Jr JD. Development of a liquid core waveguide based field instrument for analysis of iron. Presented at the Second Black Sea Basin Conference on Analytical Chemistry, Istanbul, Turkey, 2003. R828772 (2003)
R828772 (Final)
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Presentation Cakin D, Ingle Jr JD. Design and characterization of a liquid core waveguide based analytical device for the analysis of anaerobic systems. Presented at the EPA/ORD/HSRC Superfund Research on Risk Characterization and Monitoring, Las Vegas, NV, 2004. R828772 (Final)
R828772C011 (2005)
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Presentation Cakin D, Ingle Jr J. Methodology of low volume sampling for monitoring oxygen and reduced species in anaerobic cultures. Presented at the Subsurface Biosphere Initiative Workshop/IGERT Retreat, Newport, OR, June, 2007. R828772 (Final)
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Presentation Cantrell K, Ingle Jr. JD. Design of miniature spectrometers based on light emitting diodes. Presented at the 31st Federation of Analytical Chemistry and Spectroscopy Societies Meeting, Portland, OR, October 3-7, 2004. R828772 (2004)
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Presentation Cantrell K, Ingle Jr JD. Design of miniature spectrometers based on light emitting diodes. Presented at the 51st International Conference on Analytical Sciences and Spectroscopy (ICASS), Quebec City, Canada, October 8-13, 2005. R828772 (Final)
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Presentation Cheng H, Reinhard M. Inhibition of 2,2-dichloropropane dehydrohalogenation by micropore sorption. Poster presented at the 230th ACS National Meeting, Washington, DC, August 28-September 1, 2005. R828772 (Final)
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Presentation Dolan ME, Semprini L, McCarty PL, Hopkins G. Solvent mixtures by bioaugmented butane-utilizing microorganisms. Presented at the Joint International Symposia for Subsurface Microbiology (ISSM 2005) and Environmental Biogeochemistry (ISEB XVII), Jackson Hole, WY, August 14-19, 2005. R828772C008 (2005)
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Presentation Doughty DM, Sayavdero-Soto LA, Bottomley PJ, Arp DJ. Metabolism of dichloroethenes by Pseudomonas butanovora. Presented at the Annual Meeting of the American Society for Microbiology, New Orleans, LA, 2004. R828772 (2004)
R828772 (Final)
R828772C010 (2005)
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Presentation Doughty DM, Halsey KH, Vievelle C, Sayavedra-Soto LA, Arp DJ, Bottomley PJ. Propionate-dependent Inactivation of Butane Monooxygenase. Poster presented at the Molecular Basis for Microbial One-carbon Metabolism, Gordon Research Conference, Magdalen College, Oxford, UK, 2006. R828772 (Final)
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Presentation Gandhi RK. Bio-enhanced in-well vapor stripping for the remediation of trichloroethylene contamination. Presented at the Department of Geological and Environmental Sciences, Stanford University, Stanford, CA, 2001. R828772 (2002)
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Presentation Ginn T, Scow K. Much ado about upscaling: microbiology to engineering science and back again. Presented at the Joint International Symposia for Subsurface Microbiology (ISSM 2005) and Environmental Biogeochemistry (ISEB XVII), Jackson Hole, WY, August 14-19, 2005. R828772C008 (2005)
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Presentation Goltz MN, Gandhi RK, Gorelick SM, Hopkins GD, LeBron C, McCarty PL, Reinhard M. Application of Circulating Wells for In Situ Treatment of Contaminated Groundwater. Presented at the International Symposium on Soil and Groundwater Contamination Control Strategy, Kyung Hee University, Seoul, Korea, 2001. R828772 (2002)
R828772 (Final)
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Presentation Goltz MN, Gandhi RK, Gorelick SM, Hopkins GD, McCarty PL. Field experiments using in situ bioremediation to treat trichloroethylene (TCE)-contaminated groundwater. Presented at the Spring Meeting of the Korean Groundwater and Soil Environment Society, Hanyang University, Seoul, Korea, April 13-14, 001. R828772 (2002)
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Presentation Halsey KH, Sayavedra-Soto LA, Bottomley PJ, Arp DJ. Kinetics of TCE transformation and comparisons of TCE transformation-dependent toxicities in butane-oxidizing bacteria. Presented at the Annual Meeting of the American Society for Microbiology, New Orleans, LA, 2004. R828772 (2004)
R828772 (Final)
R828772C010 (2005)
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Presentation Halsey KH, Doughty DM, Sayavedra-Soto LA, Bottomley PJ, Arp DJ. Investigating the basis of substrate specificity of butane monooxygenase and chlorinated ethene toxicity in pseudomonas butanovora. Poster presented at the Molecular Basis for Microbial One-carbon Metabolism, Gordon Research Conference, Magdalen College, Oxford, UK, 2006. R828772 (Final)
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Presentation Istok JD, Krumholz L, Peacock A, McKinley J. Factors controlling in situ uranium and technetium bio-reduction and reoxidation. Presented at the Joint International Symposia for Subsurface Microbiology (ISSM 2005) and Environmental Biogeochemistry (ISEB XVII), Jackson Hole, WY, August 14-19, 2005. R828772C008 (2005)
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Presentation Koch CR, Remcho VT, Ingle JD. Microfluidics in the subsurface:towards in-situ analysis of microliter volumes in a miniaturized package. Presented at the Subsurface Biosphere Initiative Workshop/IGERT Retreat, Newport, OR, June 2007. R828772 (Final)
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Presentation Lee JH, Dolan ME, Istok J, Reed R, Field JA. Monitoring bioaugmentation with single-well push-pull tests in sediment systems contaminated with trichloroethene. Poster presented at the Fourth SETAC World Congress and 25th Annual Meeting Portland, OR, November 14-18, 2004. R828772 (Final)
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Presentation Luo J, Weber F-A, Cirpka OA, Wu W-M, Carley J, Nyman J, Jardine P, Criddle CS, Kitanidis PK. Reactive transport simulation of a field-scale U(VI) bioremediation experiment. Presented at the Annual DOE-NABIR FRC Conference, Oak Ridge, TN, 2005. R828772 (Final)
R828772C013 (2005)
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Presentation Martinez-Prado A, Williamson KJ, Ciuffetti LM, Guenther R. Modeling of MTBE Kinetics by alkane grown mycobacterium vaccae. Presented at the Seventh International Symposium on In Situ and On-Site Bioremediation, Orlando, FL, June 2-5, 2003. R828772 (2003)
R828772 (Final)
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Presentation Martinez-Prado A, Skinner K, Ciuffetti LM, Williamson KJ. MTBE kinetics by alkane grown Mycobacterium vaccae JOB5 and graphium sp. Presented at the 3rd International Conference on Remediation of Chlorinated and Recalcitrant Compounds, Battelle Press, Columbus, OH. R828772 (2002)
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Presentation McCarty PL. Strategies for in-situ bioremediation of chlorinated solvent contaminated groundwater. Presented at Groundwater Quality 2001, University of Sheffield, Sheffield, United Kingdom, June 18-21, 2001. R828772 (2002)
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Presentation Munakata N, Cunningham JA, Ruiz R, Lebron C, Reinhard M. Palladium catalysis in horizontal-flow treatment wells: field-scale design and laboratory study. Presented at the Third International Conference on Remediation of Chlorinated and Recalcitrant Compounds, Monterey, CA, May 20-23, 2002. R828772 (Final)
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Presentation Munakata N, Cunningham J, Ruiz R, Lebron C, Reinhard M. Pd-catalyzed hydrodechlorination of chlorinated organic pollutants in groundwater. Presented at the Third International Conference on Remediation of Chlorinated and Recalcitrant Compounds, Monterey, CA, May 20-23, 2002. R828772 (2002)
R828772 (Final)
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Presentation Musarrat J, Criddle CS, Hashsham SA. Development of DNA microarray technology for environmental applications. Presented at the 74th Water Environment Federation (WEF) Technology Conference and Exposition, Atlanta, GA, 2001. R828772 (2002)
R828772 (Final)
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Presentation Musarrat J, Larabee J, Criddle C, Hashsham SA. Monitoring the abundance of mRNA transcripts associated with carbon tetrachloride dechlorination in Pseudomonas stutzeri strain KC under different environmental conditions using DNA microarray. Presented at the 101st General Meeting of the American Society for Microbiology, Orlando, FL, 2001. R828772 (2002)
R828772 (Final)
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Presentation Osathaphan K, Azizian MF, Nelson PO. Chromated copper arsenate, or CCA adsorption on an iron-oxide adsorbent. Presented at the American Chemical Society Meeting, 2001. R828772 (Final)
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Presentation Pon G, Semprini L. The use of anaerobic reductive dechlorination of 1,1-chloro-fluoroethene to track the transformation of vinyl chloride. Presented at the In Situ and On-Site Bioremediation the Seventh International Symposium, Orlando, FL, June, 2-5, 2003. R828772 (2003)
R828772 (Final)
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Presentation Razzetti C, Dolan ME, Semprini L. Cometabolic degradation of 1,1,1-trichloroethane and 1,1-dichloroethane by a Rhodococcus species. Presented at the SETAC Annual Meeting, Portland, OR, 2004. R828772 (2004)
R828772 (Final)
R828772C010 (2005)
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Presentation Razzetti C, Dolan ME, Semprini L. Cometabolic degradation of 1,1,1-trichloroethane and 1,1-dichloroethane by a Rhodococcus species in a soil column reactor. Presented at the 10th EuCheMS Conference on Chemistry and the Environment, Rimini, Italy, September, 2005. R828772 (Final)
R828772C010 (2005)
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Presentation Razzetti C, Dolan ME, Semprini L. Cometabolic degradation of 1,1,1-trichloroethane and 1,1-dichloroethane by a rhodococcus species: kinetic studies and model simulations. Presented at the 10th EuCheMS Conference on Chemistry and the Environment, Rimini, Italy, September, 2005. R828772 (Final)
R828772C010 (2005)
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Presentation Ruiz-Haas P, Ingle Jr JD. Evaluation of redox conditions with redox-indicator based sensors in soil and microcosms bioaugmented with reductive dehalogenating bacteria. Presented at the EPA/ORD/HSRC Superfund Research on Risk Characterization and Monitoring, Las Vegas, NV, 2004. R828772 (Final)
R828772C011 (2005)
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Presentation Ruiz-Haas P, Ingle Jr JD. Monitoring of redox conditions with redox-indicator based sensors in soil columns and microcosms bioaugmented with reductive dehalogenating bacteria. Presented at the Joint International Symposia for Subsurface Microbiology and Environmental Biogeochemistry, Jackson, WY, 2005. R828772 (Final)
R828772C011 (2005)
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Presentation Ruiz-Haas P, Ingle Jr JD. Monitoring of redox conditions with redox-indicator based sensors in soil columns and microcosms bioaugmented with reductive dehalogenating bacteria. Presented at the American Chemical Society (ACS) Fall National Meeting, Washington, DC, 2005. R828772 (Final)
R828772C011 (2005)
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Presentation Sabalowsky AR, Semprini L. Alkynes as reversible inhibitors for probing mechanisms of reductive dehalogenation of chloroethenes. Presented at the Joint International Symposia for Subsurface Microbiology (ISSM 2005) and Environmental Biogeochemistry (ISEB XVII), Jackson Hole, WY, August 14-19, 2005. R828772 (Final)
R828772C008 (2005)
R828772C012 (2005)
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Presentation Semprini L, Dolan ME, Mathias M, Hopkins GD, McCarty PL. Laboratory, field, and modeling studies of aerobic cometabolism of CAHs by butane-utilizing microorganisms. Presented at the Seventh International Symposium on In Situ and On-Site Bioremediation, Orlando, FL, June 2-5, 2003. R828772 (2003)
R828772 (Final)
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Presentation Semprini L, Azizian M, Sabalowsky A, Dolan M, Ruiz-Hass P, Ingle J, Behrens S, Spormann A. A continuous flow column study of anaerobic PCE transformation with the evanite culture and Hanford Aquifer Solids. Presented at the Joint International Symposia for Subsurface Microbiology (ISSM 2005) and Environmental Biogeochemistry (ISEB XVII), Jackson Hole, WY, August 14-19, 2005. R828772 (Final)
R828772C008 (2005)
R828772C012 (2005)
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Presentation Semprini L, Dolan ME, Azizian MF. Anaerobic transformation of trichloroethene and trichlorofluoroethene in a continuous flow column study. Presented at the American Chemical Society, Division of Environmental Chemistry, ACS National Meeting, Boston, MA, August 19-23, 2007. R828772 (Final)
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Presentation Skinner KM. Groundwater remediation through environmental biotechnology: transgenic phytoremediation of methyl tertiary butyl ether. Poster presented at the EPA STAR Fellowship Conference, Washington DC, 2004. R828772 (Final)
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Presentation Skinner KM, Ciuffetti LM. Characterization of a fungal gene results in the development of technologies for transgenic bioremediation and biosensing of environmental pollutants. Poster presented at the 23rd Annual Fungal Genetics and Biology Conference, Pacific Grove, CA, 2005. R828772 (Final)
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Presentation Skinner KM, Hyman MR, Ciuffetti LM. Pathway, inhibition and regulation of MTBE oxidation by a filamentous fungus, a graphium sp. Poster presented at the 106th General Meeting of the American Society for Microbiology, Orlando, FL, 2006. R828772 (Final)
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Presentation Sriwatanapongse W, Reinhard M, Klug CA. Reductive hydrodechlorination of TCE by palladium on alumina catalyst:a solid state NMR study of the surface reaction. Presented at the 230th ACS National Meeting, Washington, DC, August 28-September 1, 2005 (Abstracts of Papers, American Chemical Society, v. 222, pt.1, p. 372). R828772 (Final)
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Presentation Sriwatanapongse W, Reinhard M, Klug CA. A solid state NMR study of the surface reaction of the supported palladium catalyzed hydrodechlorination of trichloroethylene. Presented at the AIChE Annual Meeting, Cincinnati, OH, October 30-November 4, 2005. R828772 (Final)
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Presentation Taylor AE, Semprini L, Bottomley PJ, Dolan M. Evaluation of fluoroethene as an analogue for aerobic vinyl chloride degradation. Presented at the Joint International Symposia for Subsurface Microbiology (ISSM 2005) and Environmental Biogeochemistry (ISEB XVII), Jackson Hole, WY, August 14-19, 2005. R828772 (Final)
R828772C008 (2005)
R828772C010 (2005)
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Presentation Yeager C. Physiological consequences of trichloroethylene degradation by the toluene-oxidizing bacterium Burkholderia cepacia G4. Presented at Oregon State University, Molecular and Cellular Biology Program, Corvallis, OR, 2001. R828772 (2002)
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Presentation Yu S, Semprini L. Dechlorination of PCE DNAPL with TBOS using a binary mixed culture. Presented at the 3rd International Conference on Remediation of Chlorinated and Recalcitrant Compounds, Monterey, CA, May 20-23, 2002 (2B-49). R828772 (Final)
R828772C001 (2001)
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Presentation Yu S, Semprini L. Kinetic studies and comparison for reductive dechlorination by a binary mixed culture. Presented at the Seventh International Symposium on In Situ and On-Site Bioremediation, Orlando FL, June 2-5, 2003. R828772 (2003)
R828772 (Final)
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Presentation Yu S, Semprini L. TBOS as a slow release anaerobic substrate for reductive dechlorination of chlorinated aliphatic hydrocabons. Presented at the In-Situ Contaminated Sediment Capping Workshop, Cincinnati, OH, May 12-14, 2003. R828772 (2003)
R828772 (Final)
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Presentation Yu S, Semprini L. Haldane inhibitions of reductive dechlorination at high CAH concentrations. Presented at the Joint International Symposia for Subsurface Microbiology (ISSM 2005) and Environmental Biogeochemistry (ISEB XVII), Jackson Hole, WY, August 14-19, 2005. R828772C008 (2005)
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Presentation Yu S, Semprini L. Dechlorination of PCE DNAPL with TBOS using a binary mixed culture. Presented at the 3rd International Conference on Remediation of Chlorinated and Recalcitrant Compounds, Monterey, CA, Battelle Press, Columbus, OH, 2002. R828772 (2002)
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Proceedings Luo J, Fienen MN, Kitanidis PK. 3-D Groundwater flow modeling for the Oak Ridge Reservation (ORR): finite-volume method on an unstructured grid system. In: Proceedings of the International Groundwater Symposium, Berkeley, CA, March 25-28, 2002. R828772 (Final)
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Proceedings Munakata N, Cunningham JA, Reinhard M, Ruiz R, Lebron C. Palladium catalysis in horizontal-flow treatment wells: field-scale design and laboratory study. In: Gavaskar A, Chen A, eds. Proceedings of the Third International Conference on Remediation of Chlorinated and Recalcitrant Compounds: Advances in ex situ Treatment of Groundwater. Columbus, OH: Batelle Press, 2002. R828772 (Final)
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Proceedings Munakata N, Cunningham JA, Ruiz R, Lebron C, Reinhard M. Palladium catalysis in horizontal-flow treatment wells:field-scale design and laboratory study. Remediation of chlorinated and recalcitrant compounds:advances in ex situ treatment of groundwater. In:Gavaskar A, Chen A, eds. Proceedings of the 3rd International Conference on the Remediation of Chlorinated and Recalcitrant Compounds, Monterey, CA, May 2002. R828772 (2003)
R828772C004 (2002)
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Proceedings Semprini L, Dolan ME, Mathias M, Hopkins GD, McCarty PL. Laboratory and field studies of bioaugmentation of butane-utilizing microorganisms for the in-situ cometabolic treatment of treatment of 1,1-dichloroethene, 1,1-dichloroethane, and 1,1,1-trichloroethane. In: Proceedings of the 3rd European Conference on Bioremediation, Crete, Greece, July 3-5, 2005. R828772 (Final)
R828772C010 (2005)
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Proceedings Sriwatanapongse W, Reinhard M, Klug CA. A solid state NMR study of the surface reaction of the supported palladium catalyzed hydrodechlorination of trichloroethylene. In: Proceedings of the AIChE Annual Meeting, Cincinnati, OH, October 30-November 4, 2005, p. 9962. R828772 (Final)
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